Wall clock time and date at job start Mon Mar 30 2020 01:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48506 * 109.46920 * 275.41507 * 3 2 1 5 5 H 1.48497 * 109.46738 * 35.41094 * 3 2 1 6 6 H 1.48493 * 109.47157 * 155.41418 * 3 2 1 7 7 C 1.40050 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99588 * 341.79722 * 7 2 1 9 9 C 1.40951 * 120.00325 * 161.80495 * 7 2 1 10 10 C 1.40938 * 120.13385 * 330.01367 * 9 7 2 11 11 C 1.36207 * 119.89388 * 180.02562 * 10 9 7 12 12 C 1.40000 * 120.19055 * 0.02562 * 11 10 9 13 13 C 1.48013 * 119.85914 * 179.97438 * 12 11 10 14 14 C 1.39996 * 120.93431 * 130.00073 * 13 12 11 15 15 C 1.37912 * 119.01082 * 179.97438 * 14 13 12 16 16 N 1.31959 * 120.93726 * 0.02562 * 15 14 13 17 17 C 1.31905 * 122.07599 * 359.97438 * 16 15 14 18 18 C 1.38111 * 120.87418 * 359.74505 * 17 16 15 19 19 Cl 1.73601 * 120.51561 * 180.28668 * 18 17 16 20 20 C 1.39761 * 120.27918 * 359.70512 * 12 11 10 21 21 C 1.36589 * 120.09695 * 0.54892 * 20 12 11 22 22 F 1.35100 * 120.09706 * 179.75128 * 21 20 12 23 23 H 0.96998 * 120.00098 * 359.97438 * 1 2 3 24 24 H 1.07991 * 120.05188 * 0.03852 * 10 9 7 25 25 H 1.07999 * 119.90060 * 179.97438 * 11 10 9 26 26 H 1.07992 * 120.49588 * 359.94922 * 14 13 12 27 27 H 1.08001 * 119.52850 * 179.97438 * 15 14 13 28 28 H 1.07992 * 119.55905 * 180.02562 * 17 16 15 29 29 H 1.08010 * 119.95520 * 180.30460 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3750 2.1125 -1.3939 5 1 1.5012 2.6169 0.8113 6 1 3.5919 1.4099 0.5825 7 6 2.0081 -1.2128 -0.0005 8 1 1.5086 -2.1249 0.2913 9 6 3.3648 -1.2432 -0.3817 10 6 3.8582 -0.3107 -1.3162 11 6 5.1699 -0.3448 -1.6814 12 6 6.0291 -1.3038 -1.1317 13 6 7.4531 -1.3346 -1.5342 14 6 8.4716 -1.3722 -0.5745 15 6 9.7851 -1.4005 -0.9939 16 7 10.0875 -1.3921 -2.2784 17 6 9.1604 -1.3570 -3.2160 18 6 7.8194 -1.3327 -2.8862 19 17 6.6068 -1.2941 -4.1279 20 6 5.5492 -2.2286 -0.2001 21 6 4.2347 -2.2082 0.1705 22 9 3.7696 -3.1053 1.0672 23 1 -0.4850 0.8400 0.0004 24 1 3.1974 0.4298 -1.7418 25 1 5.5481 0.3694 -2.3978 26 1 8.2324 -1.3786 0.4786 27 1 10.5775 -1.4292 -0.2606 28 1 9.4537 -1.3518 -4.2553 29 1 6.2177 -2.9630 0.2244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243382995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:12 Heat of formation + Delta-G solvation = -20.811490 kcal Electronic energy + Delta-G solvation = -18117.911201 eV Core-core repulsion = 14944.973076 eV Total energy + Delta-G solvation = -3172.938125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.35592 -41.18967 -39.44684 -37.51107 -36.00197 -34.19636 -32.04782 -31.66404 -31.22730 -27.42637 -24.70380 -24.28865 -23.23499 -22.21559 -19.59502 -18.82698 -17.65848 -17.40037 -17.07446 -16.78377 -16.50114 -16.12842 -15.78598 -15.30774 -15.00269 -14.86140 -14.64547 -13.92972 -13.91649 -13.49272 -13.19869 -12.99911 -12.89267 -12.66199 -12.18173 -12.07188 -11.90459 -11.70771 -11.21616 -10.67624 -10.53769 -9.92945 -9.64685 -9.37258 -9.07944 -6.64628 -0.17789 0.04257 0.62372 0.69250 1.15257 1.22847 1.36954 1.45352 2.03784 2.37864 2.74850 3.20374 3.49095 3.53402 3.89060 3.90092 3.98818 4.09621 4.28559 4.43075 4.59485 4.71540 4.77640 4.85423 5.07536 5.10338 5.35113 5.47124 5.59037 5.68369 5.74920 5.92162 6.15821 6.47362 6.58281 6.88281 7.98990 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.005818 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.509202 B = 4811.096294 C = 5208.689299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.051 3.949 3 Si 0.965 3.035 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.464 4.464 8 H 0.058 0.942 9 C 0.061 3.939 10 C -0.230 4.230 11 C -0.040 4.040 12 C -0.172 4.172 13 C 0.033 3.967 14 C -0.163 4.163 15 C 0.108 3.892 16 N -0.497 5.497 17 C 0.115 3.885 18 C -0.105 4.105 19 Cl -0.057 7.057 20 C -0.073 4.073 21 C -0.040 4.040 22 F -0.166 7.166 23 H 0.302 0.698 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.156 0.844 27 H 0.195 0.805 28 H 0.182 0.818 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 2.105 -3.837 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.057 3.943 10 C -0.249 4.249 11 C -0.058 4.058 12 C -0.174 4.174 13 C 0.025 3.975 14 C -0.183 4.183 15 C -0.048 4.048 16 N -0.207 5.207 17 C -0.042 4.042 18 C -0.134 4.134 19 Cl -0.028 7.028 20 C -0.092 4.092 21 C -0.060 4.060 22 F -0.145 7.145 23 H 0.113 0.887 24 H 0.130 0.870 25 H 0.143 0.857 26 H 0.174 0.826 27 H 0.211 0.789 28 H 0.199 0.801 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.731 2.127 -4.141 16.405 hybrid contribution -1.809 0.100 0.432 1.862 sum 13.922 2.227 -3.709 14.579 Atomic orbital electron populations 1.69667 1.09398 1.32425 1.33364 1.26976 0.95440 1.04421 0.89920 0.85494 0.79845 0.75738 0.80340 1.17162 1.19707 1.17180 1.19454 0.94234 0.96116 1.39360 0.92413 1.17928 0.92668 0.92187 0.91485 1.20611 0.96724 1.04381 1.03188 1.20663 0.92185 0.96504 0.96469 1.17803 0.91886 1.02172 1.05526 1.19140 0.93219 0.93637 0.91527 1.22565 0.92630 1.01930 1.01185 1.23257 0.95763 0.92998 0.92741 1.67842 1.36715 1.13834 1.02314 1.22940 0.85850 0.94611 1.00768 1.22401 0.91911 1.09047 0.90005 1.98373 1.55680 1.96785 1.51956 1.20523 0.92903 0.98879 0.96867 1.17598 0.93309 0.96918 0.98215 1.91294 1.89888 1.66689 1.66609 0.88703 0.86955 0.85724 0.82607 0.78853 0.80118 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.08 13.93 21.85 0.30 -42.77 15 2 C 0.05 2.59 5.40 85.29 0.46 3.05 15 3 Si 0.96 39.73 24.51 68.60 1.68 41.42 15 4 H -0.25 -9.38 6.71 99.48 0.67 -8.71 15 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 6 H -0.25 -10.43 6.87 99.48 0.68 -9.74 15 7 C -0.46 -25.55 9.24 23.37 0.22 -25.34 15 8 H 0.06 3.51 7.97 -2.91 -0.02 3.49 15 9 C 0.06 3.04 5.11 -21.23 -0.11 2.93 15 10 C -0.23 -10.19 7.10 22.46 0.16 -10.03 15 11 C -0.04 -1.53 8.20 22.22 0.18 -1.35 15 12 C -0.17 -6.23 5.20 -19.89 -0.10 -6.34 15 13 C 0.03 0.99 5.49 -19.81 -0.11 0.88 15 14 C -0.16 -3.90 9.64 22.62 0.22 -3.68 15 15 C 0.11 2.21 11.17 84.60 0.94 3.16 15 16 N -0.50 -11.76 10.34 -196.07 -2.03 -13.79 15 17 C 0.12 2.72 10.98 84.65 0.93 3.65 15 18 C -0.10 -2.88 6.32 22.68 0.14 -2.74 15 19 Cl -0.06 -1.60 26.25 -2.72 -0.07 -1.67 15 20 C -0.07 -2.82 9.44 22.25 0.21 -2.61 15 21 C -0.04 -1.90 7.26 22.60 0.16 -1.73 15 22 F -0.17 -8.07 16.75 44.97 0.75 -7.32 15 23 H 0.30 13.91 8.30 -92.71 -0.77 13.14 15 24 H 0.11 4.88 4.73 -2.91 -0.01 4.87 15 25 H 0.12 4.23 7.24 -2.91 -0.02 4.21 15 26 H 0.16 3.23 8.06 -2.91 -0.02 3.20 15 27 H 0.19 2.48 8.06 -2.91 -0.02 2.46 15 28 H 0.18 3.31 8.06 -2.91 -0.02 3.28 15 29 H 0.14 4.48 8.05 -2.91 -0.02 4.45 15 Total: -1.00 -58.41 273.46 5.08 -53.33 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.14 Total: 10.94 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 3.31 Total: -40.14 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -1.72 Total: -56.56 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.75 Total: -7.32 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.68 Total: 41.42 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -58.41 5.08 -53.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243382995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.519 kcal (2) G-P(sol) polarization free energy of solvation -58.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds