Wall clock time and date at job start Mon Mar 30 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86804 * 120.00308 * 2 1 4 4 H 1.48499 * 109.46804 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.46715 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47074 * 119.99611 * 3 2 1 7 7 C 1.40043 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00134 * 197.94310 * 7 2 1 9 9 C 1.41044 * 120.00192 * 17.93795 * 7 2 1 10 10 C 1.40964 * 120.10539 * 204.69335 * 9 7 2 11 11 C 1.36244 * 119.93024 * 180.02562 * 10 9 7 12 12 C 1.39929 * 120.14202 * 0.02562 * 11 10 9 13 13 C 1.47958 * 119.89539 * 179.97438 * 12 11 10 14 14 C 1.40023 * 120.93547 * 65.01626 * 13 12 11 15 15 C 1.37896 * 119.00789 * 179.97438 * 14 13 12 16 16 N 1.31972 * 120.93725 * 359.74546 * 15 14 13 17 17 C 1.31914 * 122.07796 * 0.52575 * 16 15 14 18 18 C 1.38091 * 120.88242 * 359.47622 * 17 16 15 19 19 Cl 1.73600 * 120.52137 * 180.27743 * 18 17 16 20 20 C 1.40135 * 120.20881 * 0.24699 * 12 11 10 21 21 F 1.35098 * 119.96466 * 179.72734 * 20 12 11 22 22 C 1.36517 * 120.06616 * 359.48686 * 20 12 11 23 23 H 0.97003 * 119.99627 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.03638 * 0.02562 * 10 9 7 25 25 H 1.07995 * 119.92991 * 179.97438 * 11 10 9 26 26 H 1.07998 * 120.49717 * 359.95980 * 14 13 12 27 27 H 1.07993 * 119.53166 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.55608 * 179.74810 * 17 16 15 29 29 H 1.08002 * 120.06896 * 180.27125 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6962 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0955 1.6964 1.2125 7 6 2.0079 -1.2129 0.0005 8 1 3.0485 -1.2356 0.2887 9 6 1.3541 -2.4048 -0.3751 10 6 1.8266 -3.6479 0.0922 11 6 1.1926 -4.7972 -0.2734 12 6 0.0737 -4.7461 -1.1121 13 6 -0.6103 -5.9976 -1.5061 14 6 -1.2588 -6.7938 -0.5542 15 6 -1.8842 -7.9520 -0.9655 16 7 -1.8813 -8.3104 -2.2356 17 6 -1.2787 -7.5933 -3.1645 18 6 -0.6277 -6.4189 -2.8421 19 17 0.1562 -5.4789 -4.0732 20 6 -0.3976 -3.5139 -1.5847 21 9 -1.4750 -3.4708 -2.3987 22 6 0.2278 -2.3568 -1.2194 23 1 -0.4850 0.8401 -0.0004 24 1 2.6903 -3.6894 0.7393 25 1 1.5549 -5.7496 0.0843 26 1 -1.2689 -6.5054 0.4865 27 1 -2.3873 -8.5722 -0.2385 28 1 -1.2984 -7.9270 -4.1914 29 1 -0.1381 -1.4068 -1.5801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243383211.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:54 Heat of formation + Delta-G solvation = -9.002374 kcal Electronic energy + Delta-G solvation = -18209.682601 eV Core-core repulsion = 15037.256558 eV Total energy + Delta-G solvation = -3172.426043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.72829 -39.79608 -37.51884 -36.13788 -34.27096 -32.44932 -30.76478 -29.35198 -29.23693 -25.88629 -23.19034 -22.90021 -21.26215 -20.52483 -17.80091 -16.91009 -16.23740 -15.92050 -15.72374 -15.01670 -14.76409 -14.33709 -14.10962 -13.78160 -13.69551 -13.12292 -12.76333 -12.16986 -11.97532 -11.77820 -11.60259 -11.30774 -11.23649 -10.91007 -10.72317 -10.64737 -10.15234 -9.94287 -9.41374 -9.26724 -9.20778 -8.64004 -7.68762 -7.51827 -7.06144 -4.68472 1.23321 1.38716 2.44226 2.50864 2.78007 2.92105 2.93654 3.00299 3.70999 3.95347 4.27399 4.61314 5.01930 5.11541 5.24980 5.37514 5.51876 5.65247 5.87277 6.03606 6.23220 6.40310 6.56060 6.72011 6.77986 6.81311 6.98027 7.36944 7.46925 7.59672 7.71841 7.98293 8.07018 8.30275 8.54250 8.60916 9.84610 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.031757 B = 0.005114 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.473386 B = 5473.786845 C = 5725.087465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.139 3.861 10 C -0.235 4.235 11 C -0.034 4.034 12 C -0.256 4.256 13 C 0.065 3.935 14 C -0.162 4.162 15 C 0.093 3.907 16 N -0.490 5.490 17 C 0.105 3.895 18 C -0.088 4.088 19 Cl -0.052 7.052 20 C 0.149 3.851 21 F -0.160 7.160 22 C -0.211 4.211 23 H 0.288 0.712 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -6.522 -1.764 6.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.105 0.895 9 C 0.135 3.865 10 C -0.254 4.254 11 C -0.053 4.053 12 C -0.258 4.258 13 C 0.056 3.944 14 C -0.182 4.182 15 C -0.063 4.063 16 N -0.200 5.200 17 C -0.052 4.052 18 C -0.117 4.117 19 Cl -0.023 7.023 20 C 0.130 3.870 21 F -0.139 7.139 22 C -0.231 4.231 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.158 0.842 27 H 0.173 0.827 28 H 0.174 0.826 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.143 -7.038 -2.123 7.439 hybrid contribution 0.568 1.672 0.088 1.768 sum -0.575 -5.366 -2.035 5.767 Atomic orbital electron populations 1.69782 1.07889 1.30332 1.31360 1.26096 0.94830 1.01981 0.91893 0.86245 0.80194 0.79415 0.80360 1.18425 1.20009 1.18605 1.19711 0.98481 0.91070 1.37659 0.89486 1.17433 0.89618 0.92389 0.87039 1.20693 1.04684 0.92441 1.07610 1.20057 0.93362 0.97129 0.94705 1.17660 1.04821 0.88655 1.14663 1.19144 0.91520 0.93505 0.90216 1.22413 0.98936 0.95787 1.01054 1.22655 0.96446 0.94592 0.92604 1.67703 1.18123 1.32286 1.01858 1.22551 0.93347 0.89962 0.99363 1.22428 1.02354 0.95670 0.91277 1.98360 1.79002 1.72416 1.52518 1.17233 0.84795 0.93837 0.91172 1.91361 1.53838 1.97490 1.71198 1.20922 1.01562 0.96056 1.04524 0.90036 0.88004 0.88393 0.84202 0.82672 0.82582 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.59 10.96 55.55 0.61 -17.98 15 2 C 0.07 1.70 5.13 -17.33 -0.09 1.61 15 3 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 15 7 C -0.44 -10.71 9.03 -37.84 -0.34 -11.05 15 8 H 0.09 1.98 7.91 -52.48 -0.42 1.57 15 9 C 0.14 3.42 5.57 -106.82 -0.60 2.83 15 10 C -0.23 -5.25 9.73 -39.27 -0.38 -5.63 15 11 C -0.03 -0.71 9.67 -39.67 -0.38 -1.09 15 12 C -0.26 -5.49 4.80 -104.57 -0.50 -5.99 15 13 C 0.06 1.23 5.02 -104.55 -0.52 0.70 15 14 C -0.16 -2.61 9.86 -39.04 -0.38 -3.00 15 15 C 0.09 1.34 11.17 -17.62 -0.20 1.14 15 16 N -0.49 -7.74 10.34 -13.33 -0.14 -7.87 15 17 C 0.11 1.66 10.98 -17.57 -0.19 1.47 15 18 C -0.09 -1.57 6.19 -38.94 -0.24 -1.81 15 19 Cl -0.05 -0.92 27.02 -51.86 -1.40 -2.32 15 20 C 0.15 3.52 6.49 -39.49 -0.26 3.27 15 21 F -0.16 -3.75 16.10 2.25 0.04 -3.71 15 22 C -0.21 -5.29 8.60 -39.22 -0.34 -5.62 15 23 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 24 H 0.10 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.10 1.78 8.06 -52.49 -0.42 1.35 15 26 H 0.14 2.04 8.06 -52.49 -0.42 1.62 15 27 H 0.16 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.16 2.03 8.06 -52.49 -0.42 1.61 15 29 H 0.13 3.39 6.16 -52.49 -0.32 3.07 15 LS Contribution 280.24 15.07 4.22 4.22 Total: -1.00 -26.04 280.24 -8.12 -34.16 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.99 Total: 4.58 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -4.43 Total: -23.18 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.47 Total: -25.86 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.40 Total: -2.32 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.04 -8.12 -34.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243383211.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.153 kcal (2) G-P(sol) polarization free energy of solvation -26.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds