Wall clock time and date at job start Mon Mar 30 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48504 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47312 * 300.00347 * 3 2 1 6 6 H 1.48503 * 109.47298 * 60.00040 * 3 2 1 7 7 C 1.39921 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99199 * 162.85149 * 7 2 1 9 9 C 1.41314 * 120.00362 * 342.85321 * 7 2 1 10 10 C 1.40530 * 120.20891 * 334.72414 * 9 7 2 11 11 C 1.38698 * 119.65729 * 179.97438 * 10 9 7 12 12 C 1.48352 * 119.97077 * 179.97438 * 11 10 9 13 13 C 1.39774 * 120.90711 * 310.01708 * 12 11 10 14 14 C 1.37955 * 119.03825 * 179.97438 * 13 12 11 15 15 N 1.31935 * 120.91116 * 359.97438 * 14 13 12 16 16 C 1.31913 * 122.01771 * 359.70780 * 15 14 13 17 17 C 1.38126 * 120.85906 * 0.59092 * 16 15 14 18 18 Cl 1.73594 * 120.50435 * 179.70265 * 17 16 15 19 19 C 1.39831 * 120.06388 * 0.24925 * 11 10 9 20 20 C 1.38222 * 120.42086 * 359.48673 * 19 11 10 21 21 C 1.38074 * 120.35103 * 0.51645 * 20 19 11 22 22 F 1.35099 * 120.04218 * 179.75749 * 21 20 19 23 23 H 0.97003 * 120.00240 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.16971 * 359.95104 * 10 9 7 25 25 H 1.08008 * 120.48149 * 359.95622 * 13 12 11 26 26 H 1.07997 * 119.54480 * 179.97438 * 14 13 12 27 27 H 1.07997 * 119.57262 * 180.28829 * 16 15 14 28 28 H 1.08003 * 119.78820 * 179.72778 * 19 11 10 29 29 H 1.08004 * 119.82572 * 180.25518 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8837 2.3965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0521 -1.2324 -0.2764 9 6 1.3486 -2.4086 0.3597 10 6 0.2211 -2.3700 1.1977 11 6 -0.4176 -3.5515 1.5436 12 6 -1.6081 -3.5189 2.4282 13 6 -1.5868 -2.8140 3.6349 14 6 -2.7158 -2.8091 4.4277 15 7 -3.8048 -3.4570 4.0601 16 6 -3.8697 -4.1293 2.9270 17 6 -2.7829 -4.1915 2.0768 18 17 -2.8761 -5.0852 0.5916 19 6 0.0628 -4.7740 1.0640 20 6 1.1683 -4.8149 0.2352 21 6 1.8175 -3.6493 -0.1200 22 9 2.9004 -3.6970 -0.9264 23 1 -0.4850 0.8400 0.0004 24 1 -0.1458 -1.4252 1.5706 25 1 -0.6991 -2.2811 3.9425 26 1 -2.7082 -2.2674 5.3619 27 1 -4.7830 -4.6417 2.6629 28 1 -0.4354 -5.6917 1.3397 29 1 1.5288 -5.7641 -0.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243383294.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:10 Heat of formation + Delta-G solvation = -21.517866 kcal Electronic energy + Delta-G solvation = -18201.965325 eV Core-core repulsion = 15028.996569 eV Total energy + Delta-G solvation = -3172.968756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.25000 -41.22165 -39.16672 -37.52645 -35.83996 -34.11264 -32.09595 -31.69529 -30.11530 -27.37279 -24.88468 -24.45791 -23.12068 -21.95979 -19.44851 -18.12121 -17.88943 -17.50600 -17.15044 -16.84433 -16.36093 -15.99898 -15.46684 -15.18659 -14.92818 -14.57611 -14.47054 -13.84889 -13.55761 -13.30703 -13.24782 -12.89286 -12.81772 -12.55706 -12.20617 -12.07414 -11.95704 -11.51781 -11.19038 -10.67818 -10.58529 -9.94139 -9.56403 -9.12025 -8.73635 -6.46280 -0.17463 0.00810 0.81772 0.86548 1.11702 1.37091 1.45095 1.52047 2.17329 2.53719 2.72610 3.40181 3.48188 3.55015 3.86084 3.94772 3.98391 4.28281 4.33138 4.62519 4.67650 4.77801 4.91974 4.98997 5.15107 5.26429 5.45417 5.54971 5.64396 5.88686 5.92958 6.08960 6.45892 6.72602 6.79323 6.82418 8.21442 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.006710 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.961720 B = 4171.841705 C = 5188.937489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.043 3.957 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.071 0.929 9 C 0.056 3.944 10 C -0.127 4.127 11 C -0.060 4.060 12 C 0.015 3.985 13 C -0.159 4.159 14 C 0.108 3.892 15 N -0.490 5.490 16 C 0.114 3.886 17 C -0.096 4.096 18 Cl -0.051 7.051 19 C -0.175 4.175 20 C -0.121 4.121 21 C -0.051 4.051 22 F -0.169 7.169 23 H 0.293 0.707 24 H 0.119 0.881 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.187 0.813 28 H 0.125 0.875 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -3.212 6.583 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.174 4.174 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.053 3.947 10 C -0.146 4.146 11 C -0.060 4.060 12 C 0.007 3.993 13 C -0.179 4.179 14 C -0.048 4.048 15 N -0.199 5.199 16 C -0.043 4.043 17 C -0.125 4.125 18 Cl -0.023 7.023 19 C -0.195 4.195 20 C -0.140 4.140 21 C -0.071 4.071 22 F -0.148 7.148 23 H 0.104 0.896 24 H 0.137 0.863 25 H 0.166 0.834 26 H 0.214 0.786 27 H 0.204 0.796 28 H 0.143 0.857 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.868 -3.123 6.956 10.261 hybrid contribution 1.506 0.528 -1.316 2.069 sum -5.362 -2.594 5.640 8.203 Atomic orbital electron populations 1.69834 1.08765 1.31033 1.34376 1.26669 0.95504 1.04253 0.90945 0.85156 0.79249 0.76011 0.79375 1.18612 1.19029 1.17956 1.19682 0.98068 0.92252 1.41963 0.91047 1.17859 0.93441 0.91704 0.91733 1.21137 0.97332 0.96551 0.99622 1.18512 0.94664 0.93988 0.98882 1.19386 0.92233 0.93560 0.94166 1.22486 1.01731 0.99969 0.93688 1.23247 0.86952 0.94596 0.99968 1.67853 1.27845 1.08479 1.15754 1.23011 0.97160 0.95630 0.88538 1.22307 0.96698 1.01626 0.91887 1.98362 1.98181 1.73091 1.32620 1.20456 0.98954 0.96291 1.03761 1.20705 0.97095 0.96051 1.00119 1.18273 0.91396 0.95730 1.01744 1.91244 1.53881 1.97385 1.72323 0.89613 0.86276 0.83366 0.78642 0.79583 0.85712 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.54 10.97 21.82 0.24 -40.30 15 2 C 0.04 2.07 5.15 85.25 0.44 2.51 15 3 Si 0.98 37.01 29.59 68.60 2.03 39.04 15 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 5 H -0.27 -9.65 7.11 99.48 0.71 -8.95 15 6 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 7 C -0.49 -26.30 8.77 23.43 0.21 -26.09 15 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 15 9 C 0.06 2.95 5.57 -21.28 -0.12 2.83 15 10 C -0.13 -6.19 8.17 22.94 0.19 -6.00 15 11 C -0.06 -2.55 5.17 -20.09 -0.10 -2.65 15 12 C 0.02 0.54 5.49 -19.82 -0.11 0.43 15 13 C -0.16 -4.83 9.64 22.57 0.22 -4.61 15 14 C 0.11 2.73 11.17 84.61 0.95 3.68 15 15 N -0.49 -13.38 10.35 -196.03 -2.03 -15.41 15 16 C 0.11 3.09 10.98 84.65 0.93 4.02 15 17 C -0.10 -3.08 6.32 22.63 0.14 -2.94 15 18 Cl -0.05 -1.62 26.25 -2.72 -0.07 -1.69 15 19 C -0.18 -7.13 8.28 22.65 0.19 -6.94 15 20 C -0.12 -5.24 9.99 22.23 0.22 -5.02 15 21 C -0.05 -2.59 7.31 22.92 0.17 -2.42 15 22 F -0.17 -8.61 16.71 44.97 0.75 -7.86 15 23 H 0.29 13.06 8.30 -92.71 -0.77 12.29 15 24 H 0.12 5.99 6.18 -2.91 -0.02 5.97 15 25 H 0.15 4.27 8.06 -2.91 -0.02 4.24 15 26 H 0.20 3.36 8.06 -2.91 -0.02 3.34 15 27 H 0.19 3.90 8.06 -2.91 -0.02 3.87 15 28 H 0.12 4.48 7.24 -2.91 -0.02 4.45 15 29 H 0.13 4.86 8.06 -2.91 -0.02 4.84 15 Total: -1.00 -58.47 278.86 5.43 -53.04 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.20 Total: 16.38 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 3.31 Total: -43.21 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.79 Total: -55.71 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.75 Total: -7.86 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.69 kcal Total: -58.47 5.43 -53.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243383294.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.524 kcal (2) G-P(sol) polarization free energy of solvation -58.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds