Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48504 * 109.47282 * 239.99852 * 3 2 1 5 5 H 1.48501 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47224 * 119.99867 * 3 2 1 7 7 C 1.40115 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00186 * 159.17535 * 7 2 1 9 9 C 1.40794 * 119.99974 * 339.17746 * 7 2 1 10 10 C 1.41037 * 120.34383 * 324.19736 * 9 7 2 11 11 F 1.35093 * 120.10204 * 0.02562 * 10 9 7 12 12 C 1.37775 * 119.79393 * 179.97438 * 10 9 7 13 13 C 1.38776 * 120.51962 * 0.02562 * 12 10 9 14 14 C 1.38197 * 120.71174 * 359.73443 * 13 12 10 15 15 C 1.39037 * 120.17802 * 0.52004 * 14 13 12 16 16 C 1.47890 * 120.25613 * 179.76515 * 15 14 13 17 17 C 1.40043 * 120.93426 * 64.74710 * 16 15 14 18 18 C 1.37890 * 119.00290 * 179.97438 * 17 16 15 19 19 N 1.31970 * 120.94169 * 359.74331 * 18 17 16 20 20 C 1.31915 * 122.08150 * 0.52751 * 19 18 17 21 21 C 1.38094 * 120.88518 * 359.47402 * 20 19 18 22 22 Cl 1.73599 * 120.51983 * 180.27788 * 21 20 19 23 23 H 0.97004 * 119.99954 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.74003 * 179.97438 * 12 10 9 25 25 H 1.07998 * 119.64513 * 179.97438 * 13 12 10 26 26 H 1.07995 * 119.90682 * 180.28211 * 14 13 12 27 27 H 1.08000 * 120.49834 * 359.95291 * 17 16 15 28 28 H 1.07999 * 119.53106 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.55825 * 179.75353 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0082 -1.2134 0.0005 8 1 3.0353 -1.2442 -0.3319 9 6 1.3732 -2.3927 0.4345 10 6 0.4440 -2.3529 1.4948 11 9 0.1574 -1.1800 2.1008 12 6 -0.1711 -3.5137 1.9100 13 6 0.1166 -4.7232 1.2933 14 6 1.0198 -4.7858 0.2492 15 6 1.6615 -3.6332 -0.1899 16 6 2.6322 -3.6991 -1.3037 17 6 2.2242 -4.0599 -2.5939 18 6 3.1628 -4.1081 -3.6029 19 7 4.4279 -3.8155 -3.3674 20 6 4.8568 -3.4759 -2.1670 21 6 3.9859 -3.4018 -1.0978 22 17 4.5593 -2.9470 0.4763 23 1 -0.4850 0.8401 -0.0004 24 1 -0.8821 -3.4822 2.7222 25 1 -0.3736 -5.6245 1.6304 26 1 1.2305 -5.7333 -0.2243 27 1 1.1901 -4.2972 -2.7954 28 1 2.8576 -4.3857 -4.6010 29 1 5.9022 -3.2484 -2.0194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243387918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = 1.496348 kcal Electronic energy + Delta-G solvation = -18812.896852 eV Core-core repulsion = 15640.926067 eV Total energy + Delta-G solvation = -3171.970785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.06903 -39.68410 -37.33552 -35.92111 -33.78521 -32.62545 -30.61906 -29.77910 -28.61003 -25.48041 -23.38430 -22.88185 -21.06387 -20.36575 -17.62119 -16.78449 -16.08718 -15.66576 -15.39479 -14.94007 -14.64668 -14.32690 -13.80108 -13.63124 -13.52546 -12.97068 -12.55554 -12.02940 -11.77419 -11.71626 -11.58820 -11.32347 -10.93265 -10.78312 -10.68844 -10.47478 -10.21439 -9.66739 -9.17091 -9.09261 -9.01542 -8.43463 -7.59393 -7.31557 -6.95577 -4.55548 1.43161 1.59082 2.52585 2.67063 2.71771 3.03048 3.05349 3.12378 3.87567 4.15149 4.45056 4.78690 5.10040 5.21838 5.38654 5.47680 5.78891 5.90183 5.95411 6.04809 6.16391 6.42656 6.51135 6.66755 6.88942 6.96179 7.03020 7.32421 7.44946 7.62993 7.68513 7.99285 8.25622 8.28935 8.60369 8.70858 10.02890 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.009753 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.203065 B = 2870.267788 C = 3746.105989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.081 3.919 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.093 0.907 9 C 0.120 3.880 10 C 0.041 3.959 11 F -0.142 7.142 12 C -0.127 4.127 13 C -0.219 4.219 14 C -0.070 4.070 15 C -0.176 4.176 16 C 0.079 3.921 17 C -0.160 4.160 18 C 0.091 3.909 19 N -0.492 5.492 20 C 0.102 3.898 21 C -0.084 4.084 22 Cl -0.049 7.049 23 H 0.286 0.714 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.137 0.863 28 H 0.153 0.847 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -4.414 -2.133 6.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.111 0.889 9 C 0.116 3.884 10 C 0.021 3.979 11 F -0.121 7.121 12 C -0.147 4.147 13 C -0.238 4.238 14 C -0.089 4.089 15 C -0.178 4.178 16 C 0.071 3.929 17 C -0.180 4.180 18 C -0.065 4.065 19 N -0.202 5.202 20 C -0.055 4.055 21 C -0.113 4.113 22 Cl -0.020 7.020 23 H 0.097 0.903 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.155 0.845 28 H 0.171 0.829 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.078 -4.194 -2.683 6.435 hybrid contribution -0.487 1.144 0.948 1.564 sum 3.591 -3.049 -1.735 5.020 Atomic orbital electron populations 1.69724 1.07887 1.30338 1.30896 1.25879 0.94588 1.01422 0.92273 0.86408 0.80418 0.80200 0.80282 1.18816 1.20138 1.18428 1.19565 0.99809 0.91040 1.37782 0.88880 1.17278 0.90056 0.92115 0.88936 1.17707 1.03439 0.80317 0.96436 1.91336 1.92427 1.46694 1.81617 1.20666 1.00468 0.92591 1.00943 1.20019 1.05470 0.96051 1.02309 1.20494 0.96055 0.95683 0.96655 1.18124 1.05189 0.94393 1.00098 1.18999 0.90720 0.89548 0.93641 1.22312 1.01268 1.02330 0.92134 1.22579 0.88438 0.96242 0.99224 1.67670 1.17727 1.13020 1.21794 1.22510 0.99500 0.96650 0.86852 1.22320 0.94750 1.05524 0.88699 1.98356 1.88316 1.90455 1.24860 0.90269 0.88032 0.88157 0.88563 0.84480 0.82934 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.71 11.11 55.56 0.62 -19.09 15 2 C 0.08 2.01 4.48 -17.30 -0.08 1.93 15 3 Si 0.90 19.02 29.61 -169.99 -5.03 13.99 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 15 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 7 C -0.45 -11.47 7.60 -37.91 -0.29 -11.76 15 8 H 0.09 2.29 5.10 -52.49 -0.27 2.02 15 9 C 0.12 2.99 4.98 -106.49 -0.53 2.46 15 10 C 0.04 1.04 6.69 -38.69 -0.26 0.78 15 11 F -0.14 -3.74 14.22 2.25 0.03 -3.71 15 12 C -0.13 -2.83 9.99 -39.55 -0.40 -3.23 15 13 C -0.22 -4.47 10.03 -39.40 -0.40 -4.86 15 14 C -0.07 -1.44 9.73 -39.30 -0.38 -1.82 15 15 C -0.18 -3.92 4.80 -104.27 -0.50 -4.42 15 16 C 0.08 1.60 4.71 -104.57 -0.49 1.11 15 17 C -0.16 -2.80 9.86 -39.03 -0.38 -3.18 15 18 C 0.09 1.43 11.17 -17.62 -0.20 1.24 15 19 N -0.49 -8.39 10.34 -13.33 -0.14 -8.52 15 20 C 0.10 1.74 10.98 -17.57 -0.19 1.55 15 21 C -0.08 -1.59 5.37 -38.93 -0.21 -1.80 15 22 Cl -0.05 -0.92 25.69 -51.86 -1.33 -2.26 15 23 H 0.29 6.80 8.29 -40.82 -0.34 6.46 15 24 H 0.10 2.04 8.06 -52.49 -0.42 1.61 15 25 H 0.10 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.14 2.18 8.06 -52.49 -0.42 1.76 15 28 H 0.15 1.85 8.06 -52.49 -0.42 1.43 15 29 H 0.15 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -27.21 274.41 -7.96 -35.17 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -1.94 Total: 2.30 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -4.30 Total: -22.03 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.48 Total: -27.62 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.03 Total: -3.71 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.33 Total: -2.26 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.21 -7.96 -35.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243387918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds