Wall clock time and date at job start Mon Mar 30 2020 01:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48504 * 109.47282 * 239.99852 * 3 2 1 5 5 H 1.48501 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47224 * 119.99867 * 3 2 1 7 7 C 1.40115 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00186 * 159.17535 * 7 2 1 9 9 C 1.40794 * 119.99974 * 339.17746 * 7 2 1 10 10 C 1.41037 * 120.34383 * 324.19736 * 9 7 2 11 11 F 1.35093 * 120.10204 * 0.02562 * 10 9 7 12 12 C 1.37775 * 119.79393 * 179.97438 * 10 9 7 13 13 C 1.38776 * 120.51962 * 0.02562 * 12 10 9 14 14 C 1.38197 * 120.71174 * 359.73443 * 13 12 10 15 15 C 1.39037 * 120.17802 * 0.52004 * 14 13 12 16 16 C 1.47890 * 120.25613 * 179.76515 * 15 14 13 17 17 C 1.40043 * 120.93426 * 64.74710 * 16 15 14 18 18 C 1.37890 * 119.00290 * 179.97438 * 17 16 15 19 19 N 1.31970 * 120.94169 * 359.74331 * 18 17 16 20 20 C 1.31915 * 122.08150 * 0.52751 * 19 18 17 21 21 C 1.38094 * 120.88518 * 359.47402 * 20 19 18 22 22 Cl 1.73599 * 120.51983 * 180.27788 * 21 20 19 23 23 H 0.97004 * 119.99954 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.74003 * 179.97438 * 12 10 9 25 25 H 1.07998 * 119.64513 * 179.97438 * 13 12 10 26 26 H 1.07995 * 119.90682 * 180.28211 * 14 13 12 27 27 H 1.08000 * 120.49834 * 359.95291 * 17 16 15 28 28 H 1.07999 * 119.53106 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.55825 * 179.75353 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0082 -1.2134 0.0005 8 1 3.0353 -1.2442 -0.3319 9 6 1.3732 -2.3927 0.4345 10 6 0.4440 -2.3529 1.4948 11 9 0.1574 -1.1800 2.1008 12 6 -0.1711 -3.5137 1.9100 13 6 0.1166 -4.7232 1.2933 14 6 1.0198 -4.7858 0.2492 15 6 1.6615 -3.6332 -0.1899 16 6 2.6322 -3.6991 -1.3037 17 6 2.2242 -4.0599 -2.5939 18 6 3.1628 -4.1081 -3.6029 19 7 4.4279 -3.8155 -3.3674 20 6 4.8568 -3.4759 -2.1670 21 6 3.9859 -3.4018 -1.0978 22 17 4.5593 -2.9470 0.4763 23 1 -0.4850 0.8401 -0.0004 24 1 -0.8821 -3.4822 2.7222 25 1 -0.3736 -5.6245 1.6304 26 1 1.2305 -5.7333 -0.2243 27 1 1.1901 -4.2972 -2.7954 28 1 2.8576 -4.3857 -4.6010 29 1 5.9022 -3.2484 -2.0194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243387918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:49 Heat of formation + Delta-G solvation = -11.718015 kcal Electronic energy + Delta-G solvation = -18813.469870 eV Core-core repulsion = 15640.926067 eV Total energy + Delta-G solvation = -3172.543802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.96858 -41.07397 -38.99367 -37.36447 -35.55749 -34.13243 -31.99910 -31.47263 -30.23274 -27.23729 -24.88408 -24.25571 -22.80320 -21.96087 -19.40096 -18.33221 -17.55696 -17.11687 -17.04316 -16.50243 -16.37944 -16.01658 -15.68168 -15.05410 -14.81864 -14.63526 -14.18756 -13.70319 -13.37222 -13.34323 -13.18247 -12.96984 -12.53607 -12.39870 -12.31929 -12.02536 -11.82388 -11.38145 -10.94170 -10.47860 -10.47372 -9.81139 -9.30350 -9.08372 -8.74321 -6.39294 0.06376 0.16174 0.84168 0.92729 1.29161 1.31869 1.40335 1.44902 2.15683 2.67202 2.81505 3.40547 3.57208 3.74625 4.02373 4.10663 4.20882 4.34559 4.43589 4.62113 4.75889 4.81659 4.99163 5.14404 5.25444 5.29063 5.60245 5.62539 5.74886 5.93292 5.96985 6.24047 6.48310 6.81854 6.91488 6.93340 8.26304 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.009753 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.203065 B = 2870.267788 C = 3746.105989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.043 3.957 3 Si 0.955 3.045 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.481 4.481 8 H 0.092 0.908 9 C 0.097 3.903 10 C -0.003 4.003 11 F -0.159 7.159 12 C -0.133 4.133 13 C -0.206 4.206 14 C -0.076 4.076 15 C -0.170 4.170 16 C 0.050 3.950 17 C -0.164 4.164 18 C 0.102 3.898 19 N -0.497 5.497 20 C 0.105 3.895 21 C -0.097 4.097 22 Cl -0.058 7.058 23 H 0.287 0.713 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.151 0.849 28 H 0.194 0.806 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -5.921 -3.418 8.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.509 4.509 8 H 0.109 0.891 9 C 0.093 3.907 10 C -0.023 4.023 11 F -0.138 7.138 12 C -0.153 4.153 13 C -0.225 4.225 14 C -0.094 4.094 15 C -0.172 4.172 16 C 0.041 3.959 17 C -0.183 4.183 18 C -0.054 4.054 19 N -0.207 5.207 20 C -0.052 4.052 21 C -0.126 4.126 22 Cl -0.029 7.029 23 H 0.098 0.902 24 H 0.137 0.863 25 H 0.155 0.845 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.211 0.789 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.629 -5.713 -3.968 8.355 hybrid contribution -0.653 1.363 1.294 1.990 sum 3.976 -4.349 -2.674 6.471 Atomic orbital electron populations 1.69775 1.08988 1.30856 1.33281 1.26543 0.95142 1.03997 0.91806 0.85632 0.79384 0.77244 0.80103 1.18159 1.19274 1.18795 1.19667 0.99940 0.91860 1.39453 0.89065 1.17569 0.90587 0.93264 0.89242 1.18181 1.05537 0.80734 0.97857 1.91273 1.92751 1.47785 1.81980 1.20989 1.00431 0.92425 1.01409 1.20498 1.04402 0.96536 1.01111 1.20916 0.95489 0.96467 0.96556 1.18482 1.04715 0.93985 0.99988 1.19136 0.90910 0.91595 0.94242 1.22514 1.02418 1.01986 0.91424 1.23189 0.87536 0.94191 1.00461 1.67798 1.18387 1.12983 1.21486 1.22876 1.00376 0.95627 0.86286 1.22438 0.94907 1.06299 0.88955 1.98348 1.88326 1.90634 1.25575 0.90201 0.86331 0.84495 0.85454 0.83162 0.78895 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.74 11.11 21.86 0.24 -42.50 15 2 C 0.04 2.20 4.48 85.31 0.38 2.58 15 3 Si 0.95 39.72 29.61 68.60 2.03 41.75 15 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 7 C -0.48 -24.79 7.60 23.35 0.18 -24.61 15 8 H 0.09 4.57 5.10 -2.91 -0.01 4.56 15 9 C 0.10 4.88 4.98 -21.08 -0.10 4.78 15 10 C 0.00 -0.15 6.69 22.85 0.15 0.01 15 11 F -0.16 -8.69 14.22 44.97 0.64 -8.05 15 12 C -0.13 -5.84 9.99 22.29 0.22 -5.62 15 13 C -0.21 -7.90 10.03 22.39 0.22 -7.68 15 14 C -0.08 -2.94 9.73 22.45 0.22 -2.72 15 15 C -0.17 -7.43 4.80 -19.64 -0.09 -7.52 15 16 C 0.05 1.93 4.71 -19.83 -0.09 1.84 15 17 C -0.16 -5.31 9.86 22.63 0.22 -5.08 15 18 C 0.10 2.86 11.17 84.59 0.94 3.80 15 19 N -0.50 -15.43 10.34 -196.08 -2.03 -17.46 15 20 C 0.11 3.36 10.98 84.65 0.93 4.29 15 21 C -0.10 -3.58 5.37 22.69 0.12 -3.45 15 22 Cl -0.06 -2.17 25.69 -2.72 -0.07 -2.24 15 23 H 0.29 14.15 8.29 -92.71 -0.77 13.38 15 24 H 0.12 4.64 8.06 -2.91 -0.02 4.62 15 25 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15 26 H 0.13 4.09 8.06 -2.91 -0.02 4.07 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.36 15 28 H 0.19 3.76 8.06 -2.91 -0.02 3.74 15 29 H 0.18 4.66 8.06 -2.91 -0.02 4.64 15 Total: -1.00 -59.40 274.41 5.32 -54.08 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.20 Total: 13.80 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.30 Total: -39.38 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.79 Total: -59.96 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.64 Total: -8.05 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.07 Total: -2.24 kcal Total: -59.40 5.32 -54.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243387918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.363 kcal (2) G-P(sol) polarization free energy of solvation -59.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds