Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47436 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46845 * 300.00219 * 3 2 1 6 6 H 1.48495 * 109.47144 * 59.99641 * 3 2 1 7 7 C 1.40067 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99799 * 163.60915 * 7 2 1 9 9 C 1.40872 * 120.00246 * 343.89297 * 7 2 1 10 10 C 1.41125 * 120.71692 * 334.27570 * 9 7 2 11 11 C 1.36885 * 118.39724 * 179.97438 * 10 9 7 12 12 C 1.38879 * 119.80199 * 0.02562 * 11 10 9 13 13 N 1.31744 * 121.50498 * 359.97070 * 12 11 10 14 14 C 1.32592 * 121.71767 * 359.77649 * 13 12 11 15 15 C 1.47779 * 119.98989 * 180.26558 * 14 13 12 16 16 C 1.39678 * 120.14810 * 128.84678 * 15 14 13 17 17 C 1.38102 * 119.83148 * 179.79184 * 16 15 14 18 18 F 1.35103 * 119.93087 * 180.23146 * 17 16 15 19 19 C 1.38655 * 120.13300 * 0.48005 * 17 16 15 20 20 C 1.38300 * 120.30027 * 359.74586 * 19 17 16 21 21 C 1.38088 * 120.16593 * 0.02562 * 20 19 17 22 22 Cl 1.73604 * 120.06812 * 179.97438 * 21 20 19 23 23 H 0.97001 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.80293 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.09817 * 180.02562 * 11 10 9 26 26 H 1.07993 * 119.24592 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.08264 * 359.97438 * 16 15 14 28 28 H 1.08003 * 119.84756 * 179.76704 * 19 17 16 29 29 H 1.08001 * 119.91250 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7018 1.3464 -0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8831 2.3964 1.2124 7 6 2.0081 -1.2130 0.0005 8 1 3.0552 -1.2321 -0.2634 9 6 1.3452 -2.4089 0.3395 10 6 0.2045 -2.3903 1.1703 11 6 -0.4027 -3.5802 1.4690 12 6 0.1096 -4.7646 0.9557 13 7 1.1749 -4.7752 0.1806 14 6 1.8069 -3.6577 -0.1508 15 6 2.9951 -3.7134 -1.0277 16 6 3.0711 -2.8973 -2.1587 17 6 4.1865 -2.9515 -2.9713 18 9 4.2642 -2.1596 -4.0632 19 6 5.2244 -3.8207 -2.6717 20 6 5.1527 -4.6346 -1.5558 21 6 4.0454 -4.5871 -0.7322 22 17 3.9579 -5.6104 0.6674 23 1 -0.4850 0.8401 0.0004 24 1 -0.1800 -1.4598 1.5610 25 1 -1.2777 -3.5978 2.1018 26 1 -0.3768 -5.6981 1.1968 27 1 2.2610 -2.2234 -2.3955 28 1 6.0928 -3.8621 -3.3124 29 1 5.9646 -5.3097 -1.3286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245129369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -21.065499 kcal Electronic energy + Delta-G solvation = -18492.828066 eV Core-core repulsion = 15319.878926 eV Total energy + Delta-G solvation = -3172.949140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88130 -40.70094 -39.27380 -37.15070 -36.02809 -33.58334 -32.51461 -31.25028 -30.29014 -27.56032 -24.74975 -23.89981 -23.05315 -22.08857 -19.32520 -18.63295 -17.64102 -17.45189 -17.23999 -16.59374 -16.50570 -16.14626 -15.54935 -14.97800 -14.63608 -14.40381 -14.17056 -13.84624 -13.67145 -13.38021 -13.19677 -13.19391 -12.78723 -12.44666 -12.21846 -12.09429 -11.77272 -11.50962 -11.24893 -10.38257 -9.95355 -9.90475 -9.62344 -9.19063 -8.74328 -6.46278 -0.05164 0.15362 0.82132 1.10501 1.34146 1.35894 1.47592 1.50172 2.13588 2.52963 2.69228 3.20187 3.63212 3.70052 3.93853 4.09252 4.32877 4.43175 4.50586 4.76415 4.81152 4.90636 5.00507 5.07456 5.11820 5.15421 5.34753 5.41613 5.77441 5.83956 5.92446 6.00702 6.45646 6.68987 6.76288 7.70176 8.16112 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.009446 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.141035 B = 2963.420328 C = 4436.132582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.042 3.958 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.063 3.937 10 C -0.154 4.154 11 C -0.143 4.143 12 C -0.039 4.039 13 N -0.446 5.446 14 C -0.011 4.011 15 C 0.036 3.964 16 C -0.134 4.134 17 C 0.089 3.911 18 F -0.142 7.142 19 C -0.140 4.140 20 C -0.078 4.078 21 C -0.051 4.051 22 Cl -0.062 7.062 23 H 0.294 0.706 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.150 0.850 27 H 0.123 0.877 28 H 0.178 0.822 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -2.840 -2.114 8.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.058 3.942 10 C -0.180 4.180 11 C -0.163 4.163 12 C -0.200 4.200 13 N -0.153 5.153 14 C -0.149 4.149 15 C 0.034 3.966 16 C -0.154 4.154 17 C 0.070 3.930 18 F -0.121 7.121 19 C -0.159 4.159 20 C -0.097 4.097 21 C -0.079 4.079 22 Cl -0.033 7.033 23 H 0.106 0.894 24 H 0.134 0.866 25 H 0.147 0.853 26 H 0.168 0.832 27 H 0.141 0.859 28 H 0.196 0.804 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.659 -3.536 -2.354 8.758 hybrid contribution -0.724 1.720 0.428 1.915 sum 6.936 -1.816 -1.926 7.424 Atomic orbital electron populations 1.69794 1.08941 1.31240 1.33276 1.26740 0.95430 1.04349 0.91083 0.85270 0.79668 0.76419 0.79326 1.18173 1.18841 1.18423 1.19700 0.97739 0.91344 1.39827 0.90106 1.18624 0.92304 0.93236 0.89990 1.21433 0.98888 0.97639 1.00062 1.21741 1.00259 0.93711 1.00572 1.22194 0.96990 0.97533 1.03324 1.67110 1.07040 1.30334 1.10796 1.19496 1.00428 0.89455 1.05504 1.18155 0.92221 0.93545 0.92696 1.21144 0.98686 1.01078 0.94541 1.17700 0.96245 0.93653 0.85422 1.91469 1.96528 1.72478 1.51597 1.21326 0.99197 0.96175 0.99192 1.21087 0.96587 0.99363 0.92616 1.21309 0.96653 0.97146 0.92789 1.98328 1.98378 1.66182 1.40432 0.89448 0.86582 0.85318 0.83224 0.85865 0.80423 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.17 10.97 21.85 0.24 -38.93 15 2 C 0.04 1.96 5.19 85.29 0.44 2.40 15 3 Si 0.97 36.07 29.59 68.60 2.03 38.10 15 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 5 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 7 C -0.46 -23.00 7.23 23.36 0.17 -22.83 15 8 H 0.08 4.03 6.65 -2.91 -0.02 4.01 15 9 C 0.06 3.26 5.57 -21.02 -0.12 3.14 15 10 C -0.15 -7.71 8.74 22.66 0.20 -7.51 15 11 C -0.14 -6.33 10.03 22.11 0.22 -6.11 15 12 C -0.04 -1.72 11.16 84.86 0.95 -0.77 15 13 N -0.45 -21.24 9.02 -182.94 -1.65 -22.89 15 14 C -0.01 -0.55 5.83 42.46 0.25 -0.30 15 15 C 0.04 1.54 5.02 -20.03 -0.10 1.44 15 16 C -0.13 -5.52 8.00 22.59 0.18 -5.34 15 17 C 0.09 3.02 7.29 22.34 0.16 3.18 15 18 F -0.14 -4.71 17.26 44.97 0.78 -3.93 15 19 C -0.14 -3.74 10.02 22.38 0.22 -3.51 15 20 C -0.08 -2.18 9.81 22.25 0.22 -1.97 15 21 C -0.05 -1.90 6.34 22.61 0.14 -1.75 15 22 Cl -0.06 -2.26 27.10 -2.72 -0.07 -2.34 15 23 H 0.29 12.80 8.30 -92.71 -0.77 12.03 15 24 H 0.12 5.92 6.30 -2.91 -0.02 5.91 15 25 H 0.13 4.79 8.06 -2.91 -0.02 4.76 15 26 H 0.15 5.59 8.06 -2.91 -0.02 5.56 15 27 H 0.12 5.56 7.42 -2.91 -0.02 5.54 15 28 H 0.18 3.23 8.06 -2.91 -0.02 3.20 15 29 H 0.17 3.49 8.06 -2.91 -0.02 3.46 15 Total: -1.00 -56.97 276.38 5.46 -51.51 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.20 Total: 18.41 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.94 Total: -39.92 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.41 Total: -61.82 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.34 kcal Total: -56.97 5.46 -51.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245129369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.447 kcal (2) G-P(sol) polarization free energy of solvation -56.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds