Wall clock time and date at job start Mon Mar 30 2020 01:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86796 * 119.99881 * 2 1 4 4 H 1.48502 * 109.46944 * 239.99986 * 3 2 1 5 5 H 1.48493 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46906 * 120.00145 * 3 2 1 7 7 C 1.40156 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99564 * 180.02562 * 7 2 1 9 9 C 1.40800 * 120.00196 * 359.97438 * 7 2 1 10 10 N 1.33702 * 119.93787 * 0.02562 * 9 7 2 11 11 C 1.31284 * 121.63472 * 179.97438 * 10 9 7 12 12 C 1.39059 * 121.34222 * 359.97438 * 11 10 9 13 13 C 1.38376 * 119.72891 * 0.02562 * 12 11 10 14 14 C 1.39694 * 118.47602 * 359.97438 * 13 12 11 15 15 C 1.47791 * 120.65222 * 180.02562 * 14 13 12 16 16 C 1.39682 * 120.14797 * 64.97660 * 15 14 13 17 17 C 1.38091 * 119.82822 * 180.02562 * 16 15 14 18 18 F 1.35108 * 119.93108 * 180.02562 * 17 16 15 19 19 C 1.38667 * 120.13870 * 0.02562 * 17 16 15 20 20 C 1.38314 * 120.29681 * 359.96344 * 19 17 16 21 21 C 1.38077 * 120.16552 * 359.76072 * 20 19 17 22 22 Cl 1.73605 * 120.06871 * 180.26019 * 21 20 19 23 23 H 0.96993 * 119.99776 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.32462 * 179.72135 * 11 10 9 25 25 H 1.07996 * 120.13460 * 179.97438 * 12 11 10 26 26 H 1.08005 * 120.76184 * 179.97438 * 13 12 11 27 27 H 1.07998 * 120.08614 * 359.97438 * 16 15 14 28 28 H 1.08000 * 119.85643 * 179.97438 * 19 17 16 29 29 H 1.08003 * 119.91738 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3038 -2.4332 -0.0005 10 7 -0.0333 -2.4317 -0.0005 11 6 -0.7230 -3.5488 -0.0010 12 6 -0.0926 -4.7882 -0.0021 13 6 1.2896 -4.8550 -0.0022 14 6 2.0141 -3.6607 -0.0016 15 6 3.4920 -3.6759 -0.0022 16 6 4.1878 -4.1933 -1.0973 17 6 5.5686 -4.2048 -1.0907 18 9 6.2437 -4.7043 -2.1490 19 6 6.2638 -3.7047 0.0000 20 6 5.5803 -3.1909 1.0872 21 6 4.1997 -3.1681 1.0912 22 17 3.3445 -2.5165 2.4542 23 1 -0.4849 0.8400 0.0004 24 1 -1.8021 -3.5041 0.0036 25 1 -0.6792 -5.6949 -0.0021 26 1 1.7965 -5.8087 -0.0026 27 1 3.6472 -4.5841 -1.9467 28 1 7.3437 -3.7163 0.0006 29 1 6.1279 -2.8027 1.9332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245136008.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:39 Heat of formation + Delta-G solvation = -11.096897 kcal Electronic energy + Delta-G solvation = -18522.988992 eV Core-core repulsion = 15350.472123 eV Total energy + Delta-G solvation = -3172.516869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90016 -40.58035 -39.21412 -37.08695 -35.52850 -33.83340 -32.13448 -31.36953 -30.05547 -27.56604 -24.76503 -23.63295 -23.12312 -22.00910 -19.36746 -18.51118 -17.56852 -17.43008 -17.28157 -16.59583 -16.21251 -16.04270 -15.67381 -14.89760 -14.57348 -14.39668 -14.02929 -13.90872 -13.67105 -13.31735 -12.92779 -12.86143 -12.78847 -12.46183 -12.10764 -11.99285 -11.78745 -11.49313 -11.17937 -10.28155 -9.92841 -9.58278 -9.46434 -9.12831 -8.29784 -6.45132 0.03067 0.16326 0.91440 1.17638 1.38091 1.41978 1.48143 1.54256 2.20494 2.52927 2.86567 3.23527 3.76920 3.84232 4.02549 4.13905 4.32555 4.33034 4.41854 4.78698 4.80180 4.92396 5.00062 5.08517 5.09686 5.24195 5.35421 5.51312 5.70340 5.80808 5.91205 6.17256 6.31804 6.73852 7.00348 8.20336 8.42679 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.008699 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.110384 B = 3218.090926 C = 4016.862010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.030 3.970 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.425 4.425 8 H 0.084 0.916 9 C 0.254 3.746 10 N -0.519 5.519 11 C 0.113 3.887 12 C -0.315 4.315 13 C -0.036 4.036 14 C -0.249 4.249 15 C 0.038 3.962 16 C -0.156 4.156 17 C 0.096 3.904 18 F -0.141 7.141 19 C -0.146 4.146 20 C -0.079 4.079 21 C -0.053 4.053 22 Cl -0.066 7.066 23 H 0.279 0.721 24 H 0.136 0.864 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.175 0.825 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -3.885 1.395 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.455 4.455 8 H 0.102 0.898 9 C 0.131 3.869 10 N -0.232 5.232 11 C -0.054 4.054 12 C -0.338 4.338 13 C -0.061 4.061 14 C -0.254 4.254 15 C 0.036 3.964 16 C -0.175 4.175 17 C 0.077 3.923 18 F -0.119 7.119 19 C -0.165 4.165 20 C -0.098 4.098 21 C -0.080 4.080 22 Cl -0.037 7.037 23 H 0.090 0.910 24 H 0.153 0.847 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.152 0.848 28 H 0.192 0.808 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.139 -2.861 1.479 9.690 hybrid contribution 0.163 -0.246 -0.171 0.341 sum 9.302 -3.107 1.308 9.894 Atomic orbital electron populations 1.70185 1.08665 1.29114 1.28772 1.26872 0.95523 1.04129 0.92758 0.85548 0.79218 0.76653 0.80353 1.18328 1.19142 1.17991 1.19681 0.94389 0.89893 1.41577 0.89783 1.18734 0.88029 0.91840 0.88340 1.68708 1.07849 1.28176 1.18427 1.23016 0.99825 0.89156 0.93366 1.21503 0.94858 0.98346 1.19082 1.21175 0.94084 0.96215 0.94594 1.19368 0.91137 0.94592 1.20313 1.18384 0.92677 0.93892 0.91441 1.21260 0.92669 1.04237 0.99313 1.17677 0.89451 0.99454 0.85740 1.91479 1.80072 1.85313 1.55084 1.21295 1.02118 1.01269 0.91822 1.21096 0.90649 0.98360 0.99689 1.21404 0.92996 1.02823 0.90824 1.98360 1.78245 1.84444 1.42616 0.91019 0.84670 0.85647 0.86063 0.84781 0.80808 0.81550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.41 11.46 21.86 0.25 -39.16 15 2 C 0.03 1.51 5.50 85.33 0.47 1.98 15 3 Si 0.96 37.74 29.56 68.60 2.03 39.77 15 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.43 -21.95 7.28 23.36 0.17 -21.78 15 8 H 0.08 4.18 5.91 -2.91 -0.02 4.16 15 9 C 0.25 13.36 6.06 40.37 0.24 13.61 15 10 N -0.52 -28.24 7.85 -188.43 -1.48 -29.72 15 11 C 0.11 5.36 11.17 84.97 0.95 6.30 15 12 C -0.32 -13.33 10.10 22.50 0.23 -13.10 15 13 C -0.04 -1.55 9.88 22.65 0.22 -1.32 15 14 C -0.25 -11.50 4.72 -19.51 -0.09 -11.60 15 15 C 0.04 1.50 4.48 -20.02 -0.09 1.41 15 16 C -0.16 -5.48 9.73 22.58 0.22 -5.26 15 17 C 0.10 2.88 7.29 22.34 0.16 3.04 15 18 F -0.14 -4.06 17.26 44.97 0.78 -3.28 15 19 C -0.15 -3.67 10.02 22.39 0.22 -3.45 15 20 C -0.08 -2.20 9.81 22.25 0.22 -1.98 15 21 C -0.05 -1.94 5.21 22.61 0.12 -1.82 15 22 Cl -0.07 -2.57 26.05 -2.72 -0.07 -2.64 15 23 H 0.28 13.44 8.29 -92.71 -0.77 12.67 15 24 H 0.14 5.66 8.06 -2.91 -0.02 5.64 15 25 H 0.13 4.45 8.06 -2.91 -0.02 4.43 15 26 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 27 H 0.13 4.64 8.06 -2.91 -0.02 4.61 15 28 H 0.17 3.00 8.06 -2.91 -0.02 2.98 15 29 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -59.83 277.30 5.74 -54.09 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.19 Total: 14.91 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.05 Total: -33.96 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.23 Total: -68.88 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.07 Total: -2.64 kcal Total: -59.83 5.74 -54.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245136008.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.993 kcal (2) G-P(sol) polarization free energy of solvation -59.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds