Wall clock time and date at job start Mon Mar 30 2020 01:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48497 * 109.47164 * 275.42243 * 3 2 1 5 5 H 1.48500 * 109.46793 * 35.42313 * 3 2 1 6 6 H 1.48504 * 109.46763 * 155.41966 * 3 2 1 7 7 C 1.40174 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 341.21020 * 7 2 1 9 9 C 1.40922 * 119.99815 * 161.20712 * 7 2 1 10 10 C 1.41119 * 121.10977 * 331.22988 * 9 7 2 11 11 C 1.36478 * 119.10494 * 180.02562 * 10 9 7 12 12 N 1.32211 * 121.51656 * 359.71934 * 11 10 9 13 13 C 1.31669 * 122.50114 * 0.58096 * 12 11 10 14 14 C 1.39327 * 120.66068 * 359.42615 * 13 12 11 15 15 C 1.47811 * 120.78638 * 180.25574 * 14 13 12 16 16 C 1.39664 * 120.14446 * 64.99667 * 15 14 13 17 17 C 1.38111 * 119.83515 * 179.97438 * 16 15 14 18 18 F 1.35089 * 119.93667 * 180.02562 * 17 16 15 19 19 C 1.38666 * 120.12884 * 0.02562 * 17 16 15 20 20 C 1.38318 * 120.29622 * 359.97438 * 19 17 16 21 21 C 1.38084 * 120.16081 * 359.74076 * 20 19 17 22 22 Cl 1.73603 * 120.06527 * 180.25284 * 21 20 19 23 23 H 0.97005 * 119.99556 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.44711 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.24418 * 179.97438 * 11 10 9 26 26 H 1.07998 * 119.67301 * 179.70252 * 13 12 11 27 27 H 1.08001 * 120.08860 * 359.95838 * 16 15 14 28 28 H 1.07996 * 119.85056 * 179.97438 * 19 17 16 29 29 H 1.07991 * 119.91641 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3738 2.1126 -1.3938 5 1 1.5003 2.6168 0.8115 6 1 3.5910 1.4098 0.5824 7 6 2.0078 -1.2139 -0.0005 8 1 1.5109 -2.1244 0.3003 9 6 3.3606 -1.2463 -0.3937 10 6 3.8739 -0.3114 -1.3178 11 6 5.1906 -0.3806 -1.6703 12 7 5.9948 -1.2987 -1.1620 13 6 5.5800 -2.2037 -0.3002 14 6 4.2541 -2.2227 0.1273 15 6 3.7868 -3.2339 1.0989 16 6 4.2905 -3.2402 2.4015 17 6 3.8490 -4.1876 3.3043 18 9 4.3344 -4.1952 4.5650 19 6 2.9085 -5.1310 2.9192 20 6 2.4061 -5.1297 1.6305 21 6 2.8346 -4.1843 0.7197 22 17 2.1975 -4.1809 -0.8952 23 1 -0.4850 0.8401 0.0004 24 1 3.2335 0.4486 -1.7404 25 1 5.5857 0.3335 -2.3777 26 1 6.2756 -2.9358 0.0826 27 1 5.0235 -2.5062 2.7022 28 1 2.5668 -5.8700 3.6287 29 1 1.6735 -5.8669 1.3373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245136567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:42 Heat of formation + Delta-G solvation = -19.820060 kcal Electronic energy + Delta-G solvation = -18547.129969 eV Core-core repulsion = 15374.234835 eV Total energy + Delta-G solvation = -3172.895133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.90763 -40.80960 -39.42210 -37.15963 -35.96444 -33.94728 -32.87318 -31.32069 -30.05617 -27.81086 -24.87677 -23.70427 -23.34783 -22.05949 -19.66134 -18.61552 -17.67318 -17.48117 -17.37259 -16.70970 -16.43044 -16.09409 -15.97441 -15.06319 -14.87170 -14.61441 -14.37007 -14.17224 -14.02531 -13.43937 -13.36621 -12.82262 -12.70030 -12.57555 -12.32567 -12.11967 -11.66364 -11.49135 -11.21552 -10.33407 -10.08395 -9.81559 -9.64335 -9.22319 -8.99495 -6.64426 -0.02011 0.13213 0.68721 0.78603 1.25481 1.35604 1.38724 1.45818 2.06217 2.49526 2.64307 3.20463 3.48529 3.72319 3.88836 3.93716 4.12025 4.28585 4.35031 4.62968 4.71743 4.75954 4.87685 5.04995 5.07131 5.11406 5.25482 5.33642 5.44063 5.72311 5.83721 6.09058 6.30011 6.57351 6.70950 7.57019 8.04223 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.007941 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.174079 B = 3525.366971 C = 3738.802798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.057 3.943 3 Si 0.954 3.046 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.442 4.442 8 H 0.089 0.911 9 C 0.119 3.881 10 C -0.298 4.298 11 C 0.115 3.885 12 N -0.586 5.586 13 C 0.139 3.861 14 C -0.231 4.231 15 C 0.034 3.966 16 C -0.149 4.149 17 C 0.096 3.904 18 F -0.140 7.140 19 C -0.145 4.145 20 C -0.081 4.081 21 C -0.053 4.053 22 Cl -0.066 7.066 23 H 0.298 0.702 24 H 0.110 0.890 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.173 0.827 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -6.062 3.868 7.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.163 4.163 3 Si 0.778 3.222 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.107 0.893 9 C 0.111 3.889 10 C -0.320 4.320 11 C -0.035 4.035 12 N -0.300 5.300 13 C -0.016 4.016 14 C -0.236 4.236 15 C 0.032 3.968 16 C -0.168 4.168 17 C 0.077 3.923 18 F -0.118 7.118 19 C -0.163 4.163 20 C -0.100 4.100 21 C -0.080 4.080 22 Cl -0.037 7.037 23 H 0.109 0.891 24 H 0.127 0.873 25 H 0.171 0.829 26 H 0.169 0.831 27 H 0.159 0.841 28 H 0.191 0.809 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.559 -5.957 3.495 7.769 hybrid contribution -0.981 0.902 0.166 1.343 sum 2.577 -5.055 3.661 6.753 Atomic orbital electron populations 1.69640 1.09068 1.31940 1.33253 1.26834 0.95232 1.03983 0.90207 0.85651 0.79567 0.77229 0.79714 1.17930 1.20329 1.18418 1.19693 0.93603 0.96484 1.37344 0.89273 1.17905 0.92408 0.90118 0.88490 1.21738 0.98155 1.06073 1.06066 1.22117 0.90036 0.95075 0.96310 1.67502 1.38462 1.07760 1.16271 1.22561 0.92247 0.94701 0.92093 1.19501 0.94996 1.03282 1.05779 1.18290 0.93534 0.92336 0.92631 1.21261 1.03439 1.00204 0.91947 1.17659 0.97303 0.97851 0.79485 1.91478 1.86837 1.96149 1.37363 1.21306 0.97758 1.00157 0.97111 1.21075 0.99649 0.97670 0.91567 1.21397 0.99493 0.99041 0.88057 1.98361 1.85352 1.97944 1.22024 0.89085 0.87278 0.82900 0.83093 0.84124 0.80911 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.82 13.92 21.86 0.30 -40.52 15 2 C 0.06 2.82 5.42 85.33 0.46 3.29 15 3 Si 0.95 40.06 24.54 68.60 1.68 41.74 15 4 H -0.25 -10.06 6.70 99.48 0.67 -9.40 15 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 6 H -0.26 -11.47 6.86 99.48 0.68 -10.79 15 7 C -0.44 -22.29 8.26 23.40 0.19 -22.10 15 8 H 0.09 4.71 5.42 -2.91 -0.02 4.70 15 9 C 0.12 5.65 4.64 -20.92 -0.10 5.55 15 10 C -0.30 -13.52 7.24 22.57 0.16 -13.36 15 11 C 0.11 4.79 11.09 84.22 0.93 5.73 15 12 N -0.59 -24.98 10.32 -196.19 -2.02 -27.00 15 13 C 0.14 5.70 10.92 84.98 0.93 6.63 15 14 C -0.23 -9.97 4.72 -19.49 -0.09 -10.06 15 15 C 0.03 1.31 4.77 -20.03 -0.10 1.21 15 16 C -0.15 -5.09 9.73 22.58 0.22 -4.87 15 17 C 0.10 2.87 7.29 22.34 0.16 3.03 15 18 F -0.14 -3.99 17.26 44.97 0.78 -3.22 15 19 C -0.14 -3.70 10.02 22.39 0.22 -3.48 15 20 C -0.08 -2.31 9.81 22.25 0.22 -2.09 15 21 C -0.05 -1.92 5.31 22.61 0.12 -1.80 15 22 Cl -0.07 -2.55 25.58 -2.72 -0.07 -2.62 15 23 H 0.30 13.42 8.29 -92.70 -0.77 12.65 15 24 H 0.11 4.84 4.74 -2.91 -0.01 4.83 15 25 H 0.15 5.34 8.06 -2.91 -0.02 5.31 15 26 H 0.15 5.30 8.06 -2.91 -0.02 5.28 15 27 H 0.14 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.17 3.12 8.06 -2.91 -0.02 3.09 15 29 H 0.16 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -55.48 270.25 5.15 -50.33 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.14 Total: 13.60 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 3.34 Total: -32.31 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.72 Total: -67.52 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.68 Total: 41.74 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.07 Total: -2.62 kcal Total: -55.48 5.15 -50.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245136567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -55.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds