Wall clock time and date at job start Mon Mar 30 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99891 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99748 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00089 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41421 * 119.99975 * 0.27903 * 7 2 1 10 10 C 1.40470 * 119.77892 * 179.44552 * 9 7 2 11 11 C 1.39321 * 118.83639 * 179.77568 * 10 9 7 12 12 C 1.48369 * 120.82283 * 180.24458 * 11 10 9 13 13 C 1.39335 * 120.11145 * 309.97620 * 12 11 10 14 14 C 1.38210 * 119.86011 * 179.77091 * 13 12 11 15 15 F 1.35103 * 119.95209 * 180.27497 * 14 13 12 16 16 C 1.38573 * 120.10082 * 0.53157 * 14 13 12 17 17 C 1.38246 * 120.23355 * 359.69704 * 16 14 13 18 18 C 1.38172 * 120.13269 * 0.04641 * 17 16 14 19 19 Cl 1.73598 * 120.04894 * 179.97438 * 18 17 16 20 20 C 1.40042 * 118.35600 * 0.48792 * 11 10 9 21 21 C 1.38508 * 119.42176 * 359.75594 * 20 11 10 22 22 N 1.31479 * 121.14400 * 359.97438 * 21 20 11 23 23 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.58299 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.07304 * 0.02581 * 13 12 11 26 26 H 1.07994 * 119.88852 * 179.72509 * 16 14 13 27 27 H 1.07998 * 119.93268 * 180.02562 * 17 16 14 28 28 H 1.08002 * 120.29168 * 179.72504 * 20 11 10 29 29 H 1.07995 * 119.42262 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4002 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3005 -2.4375 -0.0049 10 6 2.0076 -3.6512 -0.0161 11 6 1.2913 -4.8462 -0.0165 12 6 1.9932 -6.1533 -0.0227 13 6 3.0026 -6.4003 -0.9509 14 6 3.6563 -7.6180 -0.9490 15 9 4.6391 -7.8575 -1.8446 16 6 3.3016 -8.5957 -0.0333 17 6 2.2975 -8.3567 0.8864 18 6 1.6412 -7.1409 0.8965 19 17 0.3802 -6.8433 2.0519 20 6 -0.1077 -4.7830 -0.0161 21 6 -0.7330 -3.5472 -0.0103 22 7 -0.0359 -2.4324 -0.0045 23 1 -0.4849 0.8400 -0.0004 24 1 3.0875 -3.6580 -0.0202 25 1 3.2764 -5.6403 -1.6678 26 1 3.8117 -9.5476 -0.0377 27 1 2.0253 -9.1220 1.5982 28 1 -0.6940 -5.6901 -0.0209 29 1 -1.8119 -3.4984 -0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245138169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:36 Heat of formation + Delta-G solvation = -12.564178 kcal Electronic energy + Delta-G solvation = -17854.630755 eV Core-core repulsion = 14682.050260 eV Total energy + Delta-G solvation = -3172.580495 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.99170 -40.69533 -39.43439 -37.34468 -35.59961 -33.99638 -31.97282 -31.48095 -30.26351 -27.64421 -24.99763 -23.92228 -23.00673 -22.29726 -19.56287 -18.24772 -17.64395 -17.56048 -17.17522 -16.70578 -16.33263 -16.04763 -15.84806 -15.07728 -14.66312 -14.48804 -14.19936 -14.05138 -13.89995 -13.45542 -12.98590 -12.86570 -12.77739 -12.47036 -12.34614 -12.08640 -11.83881 -11.62025 -11.23057 -10.58403 -9.85503 -9.59811 -9.51971 -9.37135 -8.30231 -6.52875 -0.21973 -0.02342 0.88958 1.09641 1.15529 1.40322 1.52155 1.55018 2.22356 2.38574 2.83825 3.08599 3.52949 3.68398 3.93461 3.97391 4.14780 4.21746 4.46793 4.66909 4.77264 4.78243 4.90154 4.96239 4.99798 5.11022 5.23596 5.43759 5.56036 5.68729 5.79865 6.08229 6.25994 6.70844 6.93352 8.17154 8.44642 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.005136 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.390534 B = 5450.564877 C = 6349.564432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.470 4.470 8 H 0.088 0.912 9 C 0.226 3.774 10 C -0.265 4.265 11 C -0.001 4.001 12 C -0.009 4.009 13 C -0.144 4.144 14 C 0.099 3.901 15 F -0.138 7.138 16 C -0.131 4.131 17 C -0.071 4.071 18 C -0.049 4.049 19 Cl -0.058 7.058 20 C -0.272 4.272 21 C 0.105 3.895 22 N -0.516 5.516 23 H 0.279 0.721 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.182 0.818 27 H 0.178 0.822 28 H 0.121 0.879 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -13.931 1.205 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.502 4.502 8 H 0.106 0.894 9 C 0.101 3.899 10 C -0.288 4.288 11 C -0.007 4.007 12 C -0.010 4.010 13 C -0.163 4.163 14 C 0.080 3.920 15 F -0.116 7.116 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.076 4.076 19 Cl -0.029 7.029 20 C -0.295 4.295 21 C -0.059 4.059 22 N -0.230 5.230 23 H 0.090 0.910 24 H 0.124 0.876 25 H 0.153 0.847 26 H 0.199 0.801 27 H 0.195 0.805 28 H 0.139 0.861 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.841 -12.959 1.282 13.577 hybrid contribution 0.553 0.216 -0.198 0.626 sum 4.394 -12.743 1.084 13.523 Atomic orbital electron populations 1.70224 1.08846 1.29111 1.29640 1.26973 0.95728 1.04487 0.92500 0.85159 0.79004 0.75776 0.79469 1.18700 1.19227 1.17942 1.19973 0.94723 0.90443 1.45015 0.89413 1.18918 0.88778 0.92924 0.89317 1.21888 0.98824 0.92612 1.15455 1.18648 0.93367 0.90783 0.97943 1.18588 0.95063 0.92721 0.94628 1.21190 0.96927 0.97504 1.00672 1.17698 0.88787 0.94742 0.90803 1.91507 1.59421 1.94668 1.66037 1.21437 0.98746 1.00369 0.94400 1.21180 0.93968 0.94807 0.98973 1.21222 0.95591 0.95993 0.94786 1.98375 1.50617 1.96238 1.57700 1.21527 0.93280 0.98218 1.16495 1.22869 0.99823 0.88806 0.94398 1.68658 1.07764 1.28596 1.17970 0.91030 0.87594 0.84684 0.80108 0.80498 0.86103 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.27 11.46 21.84 0.25 -41.02 15 2 C 0.02 1.27 5.50 85.29 0.47 1.74 15 3 Si 0.99 38.45 29.56 68.60 2.03 40.48 15 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 15 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 7 C -0.47 -25.80 9.14 23.49 0.21 -25.58 15 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 15 9 C 0.23 12.61 6.55 40.19 0.26 12.87 15 10 C -0.27 -13.06 9.37 23.07 0.22 -12.85 15 11 C 0.00 -0.04 5.11 -19.88 -0.10 -0.14 15 12 C -0.01 -0.32 5.51 -20.03 -0.11 -0.43 15 13 C -0.14 -4.51 9.52 22.53 0.21 -4.30 15 14 C 0.10 2.52 7.29 22.34 0.16 2.69 15 15 F -0.14 -3.50 17.26 44.97 0.78 -2.72 15 16 C -0.13 -2.52 10.02 22.35 0.22 -2.30 15 17 C -0.07 -1.47 9.82 22.26 0.22 -1.25 15 18 C -0.05 -1.43 6.30 22.54 0.14 -1.29 15 19 Cl -0.06 -1.76 26.04 -2.72 -0.07 -1.83 15 20 C -0.27 -11.83 8.31 22.77 0.19 -11.64 15 21 C 0.10 5.08 11.17 84.81 0.95 6.03 15 22 N -0.52 -29.11 7.85 -189.37 -1.49 -30.59 15 23 H 0.28 13.74 8.29 -92.71 -0.77 12.97 15 24 H 0.11 4.93 8.06 -2.91 -0.02 4.90 15 25 H 0.14 4.39 8.05 -2.91 -0.02 4.37 15 26 H 0.18 2.07 8.06 -2.91 -0.02 2.05 15 27 H 0.18 2.40 8.06 -2.91 -0.02 2.38 15 28 H 0.12 4.63 7.22 -2.91 -0.02 4.61 15 29 H 0.14 5.94 8.06 -2.91 -0.02 5.92 15 Total: -1.00 -63.52 280.74 5.74 -57.79 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.19 Total: 14.34 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.05 Total: -36.44 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.24 Total: -71.61 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -63.52 5.74 -57.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245138169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.221 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds