Wall clock time and date at job start Mon Mar 30 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47128 * 179.97438 * 17 16 14 19 19 C 1.34518 * 125.78445 * 90.00203 * 18 17 16 20 20 C 1.41387 * 106.83820 * 180.02562 * 19 18 17 21 21 C 1.34518 * 106.84161 * 359.97438 * 20 19 18 22 22 O 1.34299 * 125.79475 * 269.69503 * 18 17 16 23 23 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 24 24 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 25 25 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 26 26 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 27 27 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 28 28 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 29 29 H 1.07994 * 126.58450 * 359.96727 * 19 18 17 30 30 H 1.08002 * 126.58092 * 179.97438 * 20 19 18 31 31 H 1.07999 * 125.79004 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3635 -7.0451 -2.2909 19 6 3.7355 -7.7662 -3.2370 20 6 4.1163 -9.1142 -3.0447 21 6 4.9545 -9.1361 -1.9928 22 8 5.1050 -7.8792 -1.5440 23 1 -0.4850 -0.8354 -0.0877 24 1 -0.1935 -1.5131 1.7356 25 1 -1.0473 -3.8257 2.2650 26 1 2.6221 -5.9733 -0.8176 27 1 4.0744 -5.0787 -3.0686 28 1 5.1885 -5.1733 -1.6837 29 1 3.0679 -7.3882 -3.9971 30 1 3.7956 -9.9633 -3.6299 31 1 5.4296 -10.0146 -1.5820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264067257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:55 Heat of formation + Delta-G solvation = -7.046552 kcal Electronic energy + Delta-G solvation = -18145.975153 eV Core-core repulsion = 15099.137932 eV Total energy + Delta-G solvation = -3046.837221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.57553 -38.38787 -36.48401 -34.16913 -33.04468 -32.91653 -30.32589 -28.94052 -26.51439 -24.84585 -22.46921 -21.76692 -20.58712 -20.15556 -19.07101 -18.19372 -17.03600 -16.44828 -16.00075 -15.00127 -14.69003 -14.48334 -14.18446 -13.89598 -13.62392 -13.12298 -12.85375 -12.74746 -12.50846 -12.20181 -11.94479 -11.80645 -11.38059 -11.06841 -10.72854 -10.44927 -10.10860 -9.97178 -9.76659 -9.18909 -8.81624 -8.38834 -8.37808 -7.79830 -7.37389 -7.34017 -4.61582 1.63599 2.00775 2.55147 2.92312 2.96172 3.05110 3.10411 3.31877 3.52972 3.65629 3.90045 4.20453 4.35999 4.65884 4.98922 5.01893 5.08316 5.56054 5.70237 5.77066 5.82477 5.94781 6.06855 6.37126 6.45390 6.73577 6.95799 7.10788 7.12268 7.22543 7.25367 7.74119 7.91008 8.36787 8.45111 8.70375 9.47807 9.74656 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.004679 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.609162 B = 5982.754226 C = 6853.850319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.423 4.423 8 H 0.110 0.890 9 C 0.113 3.887 10 C -0.143 4.143 11 C -0.185 4.185 12 S -0.036 6.036 13 C -0.437 4.437 14 C 0.601 3.399 15 O -0.563 6.563 16 N -0.749 5.749 17 C 0.208 3.792 18 C -0.021 4.021 19 C -0.195 4.195 20 C -0.217 4.217 21 C -0.041 4.041 22 O -0.172 6.172 23 H 0.301 0.699 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.392 0.608 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -10.654 -2.049 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.453 4.453 8 H 0.128 0.872 9 C 0.102 3.898 10 C -0.176 4.176 11 C -0.320 4.320 12 S 0.220 5.780 13 C -0.556 4.556 14 C 0.399 3.601 15 O -0.446 6.446 16 N -0.404 5.404 17 C 0.084 3.916 18 C -0.071 4.071 19 C -0.215 4.215 20 C -0.236 4.236 21 C -0.109 4.109 22 O -0.067 6.067 23 H 0.115 0.885 24 H 0.149 0.851 25 H 0.159 0.841 26 H 0.226 0.774 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.993 -9.826 -2.127 10.818 hybrid contribution -0.363 -1.031 0.073 1.095 sum 3.630 -10.857 -2.055 11.630 Atomic orbital electron populations 1.70439 1.08397 1.34569 1.26493 1.27570 0.95655 1.05274 0.91032 0.83500 0.75569 0.72642 0.78718 1.19639 1.19580 1.19381 1.20996 1.02117 0.91318 1.30892 0.87208 1.17890 0.89527 0.92334 0.90054 1.21585 0.98680 0.96941 1.00400 1.24952 1.04464 0.96610 1.05952 1.82807 1.31147 1.12547 1.51532 1.22362 1.14651 0.94503 1.24062 1.16784 0.82812 0.80612 0.79893 1.90667 1.52659 1.45049 1.56231 1.45903 1.34917 1.08648 1.50933 1.19403 0.92349 0.83706 0.96095 1.22602 0.97135 0.93272 0.94125 1.21696 1.04352 0.93209 1.02200 1.21845 1.02969 0.97866 1.00931 1.24060 1.02936 0.85683 0.98201 1.84057 1.55664 1.16859 1.50144 0.88486 0.85094 0.84091 0.77403 0.89058 0.90565 0.83250 0.83445 0.78156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.43 12.48 55.57 0.69 -18.73 16 2 C 0.03 0.71 5.23 -17.28 -0.09 0.62 16 3 Si 1.07 21.13 29.99 -169.99 -5.10 16.03 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.42 -11.36 8.44 -37.94 -0.32 -11.68 16 8 H 0.11 3.11 6.14 -52.49 -0.32 2.79 16 9 C 0.11 2.96 5.41 -106.21 -0.57 2.39 16 10 C -0.14 -3.36 8.19 -39.12 -0.32 -3.68 16 11 C -0.19 -3.89 11.07 28.86 0.32 -3.57 16 12 S -0.04 -0.76 22.25 -107.50 -2.39 -3.16 16 13 C -0.44 -11.04 6.51 -35.88 -0.23 -11.27 16 14 C 0.60 14.82 7.76 -13.05 -0.10 14.72 16 15 O -0.56 -15.38 14.46 5.13 0.07 -15.30 16 16 N -0.75 -14.93 5.54 -62.93 -0.35 -15.28 16 17 C 0.21 3.51 6.20 -5.19 -0.03 3.48 16 18 C -0.02 -0.31 6.69 -35.62 -0.24 -0.55 16 19 C -0.19 -2.57 10.81 -39.70 -0.43 -3.00 16 20 C -0.22 -2.44 10.91 -39.70 -0.43 -2.87 16 21 C -0.04 -0.45 12.09 29.42 0.36 -0.09 16 22 O -0.17 -2.47 10.65 5.72 0.06 -2.40 16 23 H 0.30 7.65 6.22 -40.82 -0.25 7.39 16 24 H 0.13 3.02 6.77 -52.49 -0.36 2.66 16 25 H 0.14 2.46 8.06 -52.48 -0.42 2.04 16 26 H 0.39 7.39 7.54 -40.82 -0.31 7.08 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.20 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -29.88 291.19 -7.29 -37.17 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -2.57 Total: 12.79 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.10 Total: -15.51 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.34 Total: -34.01 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.14 Total: -17.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.10 Total: 16.03 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.39 Total: -3.16 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.88 -7.29 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264067257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds