Wall clock time and date at job start Mon Mar 30 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47128 * 179.97438 * 17 16 14 19 19 C 1.34518 * 125.78445 * 90.00203 * 18 17 16 20 20 C 1.41387 * 106.83820 * 180.02562 * 19 18 17 21 21 C 1.34518 * 106.84161 * 359.97438 * 20 19 18 22 22 O 1.34299 * 125.79475 * 269.69503 * 18 17 16 23 23 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 24 24 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 25 25 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 26 26 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 27 27 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 28 28 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 29 29 H 1.07994 * 126.58450 * 359.96727 * 19 18 17 30 30 H 1.08002 * 126.58092 * 179.97438 * 20 19 18 31 31 H 1.07999 * 125.79004 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3635 -7.0451 -2.2909 19 6 3.7355 -7.7662 -3.2370 20 6 4.1163 -9.1142 -3.0447 21 6 4.9545 -9.1361 -1.9928 22 8 5.1050 -7.8792 -1.5440 23 1 -0.4850 -0.8354 -0.0877 24 1 -0.1935 -1.5131 1.7356 25 1 -1.0473 -3.8257 2.2650 26 1 2.6221 -5.9733 -0.8176 27 1 4.0744 -5.0787 -3.0686 28 1 5.1885 -5.1733 -1.6837 29 1 3.0679 -7.3882 -3.9971 30 1 3.7956 -9.9633 -3.6299 31 1 5.4296 -10.0146 -1.5820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264067257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:55 Heat of formation + Delta-G solvation = -26.007245 kcal Electronic energy + Delta-G solvation = -18146.797351 eV Core-core repulsion = 15099.137932 eV Total energy + Delta-G solvation = -3047.659418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.57706 -40.25253 -38.31384 -35.82711 -34.89373 -33.94278 -31.73355 -30.65666 -28.13030 -26.40074 -24.25161 -22.73234 -22.01061 -21.62198 -20.90299 -19.80698 -18.24880 -18.17940 -17.22733 -16.47583 -16.36081 -16.11763 -15.77822 -15.51877 -15.08907 -14.91300 -14.17491 -14.06374 -13.80072 -13.71742 -13.55819 -13.31231 -12.94291 -12.74778 -12.53052 -12.02702 -11.87956 -11.53628 -11.01716 -10.93754 -10.58686 -10.12639 -9.68978 -9.55053 -9.24965 -9.15586 -6.56657 0.16485 0.60051 1.18793 1.39102 1.48112 1.61009 1.64958 1.80498 1.88435 1.95639 2.25826 2.46179 2.63354 3.13441 3.60242 4.07337 4.09737 4.17954 4.31325 4.37657 4.62466 4.84279 4.91610 4.97203 5.08920 5.16580 5.31467 5.35230 5.49584 5.54998 5.84329 5.90445 6.13601 6.46711 6.57991 6.82362 7.58913 7.81557 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.004679 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.609162 B = 5982.754226 C = 6853.850319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.003 3.997 3 Si 1.119 2.881 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.268 1.268 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.089 3.911 10 C -0.171 4.171 11 C -0.166 4.166 12 S 0.023 5.977 13 C -0.473 4.473 14 C 0.592 3.408 15 O -0.600 6.600 16 N -0.735 5.735 17 C 0.211 3.789 18 C -0.053 4.053 19 C -0.188 4.188 20 C -0.225 4.225 21 C -0.028 4.028 22 O -0.192 6.192 23 H 0.291 0.709 24 H 0.130 0.870 25 H 0.185 0.815 26 H 0.399 0.601 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -12.844 -1.708 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.193 1.193 7 C -0.493 4.493 8 H 0.101 0.899 9 C 0.079 3.921 10 C -0.204 4.204 11 C -0.301 4.301 12 S 0.279 5.721 13 C -0.591 4.591 14 C 0.389 3.611 15 O -0.486 6.486 16 N -0.388 5.388 17 C 0.088 3.912 18 C -0.102 4.102 19 C -0.208 4.208 20 C -0.244 4.244 21 C -0.096 4.096 22 O -0.088 6.088 23 H 0.104 0.896 24 H 0.148 0.852 25 H 0.202 0.798 26 H 0.234 0.766 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.195 0.805 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.521 -12.086 -1.789 12.715 hybrid contribution -0.206 -0.658 -0.065 0.692 sum 3.315 -12.744 -1.854 13.298 Atomic orbital electron populations 1.70527 1.08568 1.33827 1.27843 1.28763 0.95778 1.07497 0.89646 0.82975 0.74873 0.69491 0.79170 1.18132 1.18259 1.19299 1.20991 1.01463 0.93192 1.33680 0.89945 1.18359 0.90655 0.92758 0.90365 1.21466 0.99266 0.98122 1.01594 1.25492 1.04360 0.95575 1.04658 1.82454 1.29204 1.10447 1.49984 1.22894 1.15583 0.96172 1.24460 1.16992 0.82640 0.81655 0.79793 1.90633 1.53891 1.46537 1.57540 1.45738 1.35299 1.07187 1.50576 1.19352 0.90693 0.86039 0.95154 1.22139 0.99754 0.92296 0.96060 1.21985 1.03248 0.94280 1.01270 1.22215 1.03016 0.97675 1.01466 1.25000 1.01777 0.85328 0.97455 1.84036 1.55961 1.18158 1.50679 0.89585 0.85199 0.79782 0.76633 0.89011 0.91507 0.82483 0.80520 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.08 12.48 21.89 0.27 -39.81 16 2 C 0.00 0.15 5.23 85.37 0.45 0.60 16 3 Si 1.12 43.33 29.99 68.60 2.06 45.38 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.46 -26.04 8.44 23.33 0.20 -25.84 16 8 H 0.08 4.99 6.14 -2.91 -0.02 4.97 16 9 C 0.09 4.84 5.41 -20.89 -0.11 4.73 16 10 C -0.17 -8.06 8.19 22.61 0.19 -7.87 16 11 C -0.17 -6.63 11.07 66.64 0.74 -5.89 16 12 S 0.02 0.92 22.25 -56.49 -1.26 -0.34 16 13 C -0.47 -24.24 6.51 24.67 0.16 -24.08 16 14 C 0.59 30.11 7.76 86.32 0.67 30.78 16 15 O -0.60 -34.47 14.46 -4.54 -0.07 -34.54 16 16 N -0.73 -29.67 5.54 -471.20 -2.61 -32.28 16 17 C 0.21 7.27 6.20 85.63 0.53 7.80 16 18 C -0.05 -1.53 6.69 24.83 0.17 -1.36 16 19 C -0.19 -4.63 10.81 22.19 0.24 -4.39 16 20 C -0.23 -4.32 10.91 22.19 0.24 -4.08 16 21 C -0.03 -0.53 12.09 66.97 0.81 0.28 16 22 O -0.19 -5.22 10.65 -2.45 -0.03 -5.25 16 23 H 0.29 15.18 6.22 -92.71 -0.58 14.61 16 24 H 0.13 6.06 6.77 -2.91 -0.02 6.04 16 25 H 0.19 5.66 8.06 -2.91 -0.02 5.64 16 26 H 0.40 14.84 7.54 -92.71 -0.70 14.14 16 27 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.24 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -67.52 291.19 3.32 -64.20 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.67 Total: 31.95 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.27 Total: -29.33 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -2.34 Total: -72.09 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.09 Total: -39.78 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.06 Total: 45.38 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -1.26 Total: -0.34 kcal Total: -67.52 3.32 -64.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264067257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds