Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52992 * 115.55066 * 112.32462 * 3 2 1 5 5 O 1.42903 * 109.47310 * 34.32770 * 4 3 2 6 6 C 1.35001 * 117.00079 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.41755 * 119.99994 * 180.02562 * 6 5 4 9 9 S 1.75839 * 125.45537 * 359.97438 * 8 6 5 10 10 C 1.75646 * 91.48865 * 180.02562 * 9 8 6 11 11 C 1.32868 * 110.86971 * 359.76209 * 10 9 8 12 12 C 1.39678 * 115.27718 * 0.42444 * 11 10 9 13 13 C 1.40505 * 123.35877 * 179.83050 * 12 11 10 14 14 H 1.08000 * 119.99507 * 155.13019 * 13 12 11 15 15 C 1.40335 * 120.00119 * 335.11694 * 13 12 11 16 16 N 1.30621 * 120.00575 * 335.64220 * 15 13 12 17 17 Si 1.86805 * 119.99800 * 155.63689 * 15 13 12 18 18 H 1.48496 * 109.47404 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.46913 * 300.00673 * 17 15 13 20 20 H 1.48503 * 109.46960 * 60.00260 * 17 15 13 21 21 C 1.53001 * 117.51661 * 258.02450 * 3 2 1 22 22 C 1.52997 * 60.00253 * 107.48430 * 21 3 2 23 23 H 1.09001 * 109.47083 * 274.32703 * 4 3 2 24 24 H 1.09002 * 109.47354 * 154.32785 * 4 3 2 25 25 H 1.08006 * 124.56144 * 179.97438 * 10 9 8 26 26 H 1.08003 * 122.36334 * 180.21580 * 11 10 9 27 27 H 0.96997 * 119.99510 * 356.19399 * 16 15 13 28 28 H 1.09006 * 117.49972 * 214.97251 * 21 3 2 29 29 H 1.09000 * 117.49816 * 359.97438 * 21 3 2 30 30 H 1.09003 * 117.49666 * 252.51411 * 22 21 3 31 31 H 1.08998 * 117.51904 * 107.48144 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2676 0.5253 -1.2768 5 8 2.4688 1.5733 -1.8297 6 6 2.9143 2.1487 -2.9668 7 8 3.9537 1.7698 -3.4737 8 6 2.1719 3.1950 -3.5697 9 16 0.6584 3.8529 -2.9626 10 6 0.5660 4.9926 -4.2958 11 6 1.6109 4.8596 -5.1056 12 6 2.5251 3.8682 -4.7417 13 6 3.6869 3.5808 -5.4777 14 1 4.5366 3.1265 -4.9898 15 6 3.7432 3.8840 -6.8467 16 7 2.6409 3.9737 -7.5418 17 14 5.3947 4.1593 -7.6752 18 1 5.1826 4.4630 -9.1133 19 1 6.0900 5.2998 -7.0262 20 1 6.2244 2.9346 -7.5445 21 6 3.3147 0.2825 1.3274 22 6 3.3150 -1.1327 0.7461 23 1 3.3547 -0.2854 -2.0003 24 1 4.2598 0.9103 -1.0415 25 1 -0.2311 5.7079 -4.4363 26 1 1.7424 5.4724 -5.9852 27 1 1.7875 3.7767 -7.1250 28 1 4.2497 0.8418 1.2910 29 1 2.6897 0.4680 2.2009 30 1 2.6901 -1.8786 1.2372 31 1 4.2499 -1.5048 0.3270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329988870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -17.431336 kcal Electronic energy + Delta-G solvation = -18265.492299 eV Core-core repulsion = 15218.204760 eV Total energy + Delta-G solvation = -3047.287539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57681 -38.29159 -37.04655 -35.45845 -34.91331 -33.28434 -29.44661 -27.98628 -26.05819 -23.25093 -22.81865 -22.72249 -20.80877 -19.20369 -17.78192 -17.50415 -16.59511 -15.65310 -15.39894 -15.15977 -14.48370 -14.10414 -13.87680 -13.47826 -13.27977 -13.22321 -12.75568 -12.61642 -12.12159 -11.98144 -11.79390 -11.60079 -11.38468 -11.18184 -10.92296 -10.74479 -10.54562 -10.40807 -10.23247 -9.81181 -9.68378 -9.29174 -8.90877 -7.89213 -7.52439 -7.48734 -4.79417 1.78423 2.58203 2.90124 2.95205 2.95954 3.01290 3.22920 3.49694 3.54373 3.56056 3.74976 3.78014 3.87453 4.13737 4.54493 4.74814 4.84800 4.93049 5.33929 5.47350 5.59491 5.66740 5.71798 5.81048 5.82724 6.41116 6.73004 6.87923 7.06625 7.19584 7.45795 7.66688 7.72543 7.79771 8.23942 8.46399 9.23897 9.54668 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.005331 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.183539 B = 5250.987259 C = 6255.783115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.252 3.748 3 C -0.049 4.049 4 C 0.116 3.884 5 O -0.368 6.368 6 C 0.533 3.467 7 O -0.551 6.551 8 C -0.420 4.420 9 S 0.001 5.999 10 C -0.183 4.183 11 C -0.150 4.150 12 C 0.110 3.890 13 C -0.405 4.405 14 H 0.114 0.886 15 C 0.026 3.974 16 N -0.756 5.756 17 Si 1.075 2.925 18 H -0.270 1.270 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.144 4.144 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.304 0.696 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -3.488 8.478 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.066 4.066 3 C -0.052 4.052 4 C 0.039 3.961 5 O -0.287 6.287 6 C 0.391 3.609 7 O -0.448 6.448 8 C -0.536 4.536 9 S 0.259 5.741 10 C -0.318 4.318 11 C -0.183 4.183 12 C 0.100 3.900 13 C -0.435 4.435 14 H 0.132 0.868 15 C -0.200 4.200 16 N -0.378 5.378 17 Si 0.896 3.104 18 H -0.194 1.194 19 H -0.193 1.193 20 H -0.192 1.192 21 C -0.182 4.182 22 C -0.178 4.178 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.151 -3.530 8.135 9.125 hybrid contribution 0.332 -0.049 0.212 0.397 sum 2.484 -3.580 8.347 9.416 Atomic orbital electron populations 1.81181 1.12104 1.08872 1.07984 1.27337 0.93046 0.92955 0.93262 1.18356 0.83026 1.07718 0.96134 1.21702 0.93243 0.90264 0.90877 1.86217 1.52235 1.48565 1.41732 1.18150 0.83961 0.81277 0.77549 1.90715 1.25396 1.65052 1.63642 1.20774 1.05783 1.15028 1.12006 1.83425 1.25137 1.36613 1.28961 1.25268 1.02323 1.03784 1.00423 1.20419 0.95783 1.00853 1.01273 1.16859 0.91915 0.89928 0.91323 1.21219 0.99889 1.27147 0.95253 0.86808 1.27714 1.05610 0.91231 0.95439 1.70439 1.01370 1.25525 1.40498 0.83486 0.71838 0.78702 0.76410 1.19401 1.19334 1.19192 1.23309 1.02202 0.98563 0.94117 1.23215 1.02121 0.91716 1.00729 0.91033 0.90434 0.83877 0.85331 0.88208 0.86562 0.87675 0.87467 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.98 18.54 42.15 0.78 -7.20 16 2 C 0.25 4.11 14.39 -20.76 -0.30 3.81 16 3 C -0.05 -0.63 2.47 -157.30 -0.39 -1.01 16 4 C 0.12 1.87 5.49 37.15 0.20 2.08 16 5 O -0.37 -7.99 9.12 -41.32 -0.38 -8.37 16 6 C 0.53 13.45 7.73 32.07 0.25 13.70 16 7 O -0.55 -14.59 14.09 -19.41 -0.27 -14.87 16 8 C -0.42 -10.89 6.36 -37.70 -0.24 -11.13 16 9 S 0.00 0.03 23.02 -107.50 -2.47 -2.44 16 10 C -0.18 -3.90 11.11 28.88 0.32 -3.58 16 11 C -0.15 -3.50 8.03 -40.90 -0.33 -3.83 16 12 C 0.11 2.86 5.25 -107.96 -0.57 2.29 16 13 C -0.41 -10.50 8.34 -37.94 -0.32 -10.82 16 14 H 0.11 3.08 6.12 -52.49 -0.32 2.76 16 15 C 0.03 0.62 5.12 -17.28 -0.09 0.53 16 16 N -0.76 -18.29 12.53 55.57 0.70 -17.60 16 17 Si 1.07 19.97 30.00 -169.99 -5.10 14.87 16 18 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 C -0.14 -1.29 9.86 -26.73 -0.26 -1.55 16 22 C -0.14 -1.14 9.93 -26.73 -0.27 -1.41 16 23 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 24 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16 25 H 0.14 2.53 8.06 -52.48 -0.42 2.10 16 26 H 0.13 2.90 6.83 -52.48 -0.36 2.55 16 27 H 0.30 7.53 6.49 -40.82 -0.27 7.26 16 28 H 0.12 0.90 8.05 -51.93 -0.42 0.48 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -30.68 298.68 -6.91 -37.59 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.68 Total: 4.43 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.98 Total: -10.92 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 1.48 Total: -24.80 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.65 Total: -23.23 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.10 Total: 14.87 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.68 -6.91 -37.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329988870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.162 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds