Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52992 * 115.55066 * 112.32462 * 3 2 1 5 5 O 1.42903 * 109.47310 * 34.32770 * 4 3 2 6 6 C 1.35001 * 117.00079 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.41755 * 119.99994 * 180.02562 * 6 5 4 9 9 S 1.75839 * 125.45537 * 359.97438 * 8 6 5 10 10 C 1.75646 * 91.48865 * 180.02562 * 9 8 6 11 11 C 1.32868 * 110.86971 * 359.76209 * 10 9 8 12 12 C 1.39678 * 115.27718 * 0.42444 * 11 10 9 13 13 C 1.40505 * 123.35877 * 179.83050 * 12 11 10 14 14 H 1.08000 * 119.99507 * 155.13019 * 13 12 11 15 15 C 1.40335 * 120.00119 * 335.11694 * 13 12 11 16 16 N 1.30621 * 120.00575 * 335.64220 * 15 13 12 17 17 Si 1.86805 * 119.99800 * 155.63689 * 15 13 12 18 18 H 1.48496 * 109.47404 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.46913 * 300.00673 * 17 15 13 20 20 H 1.48503 * 109.46960 * 60.00260 * 17 15 13 21 21 C 1.53001 * 117.51661 * 258.02450 * 3 2 1 22 22 C 1.52997 * 60.00253 * 107.48430 * 21 3 2 23 23 H 1.09001 * 109.47083 * 274.32703 * 4 3 2 24 24 H 1.09002 * 109.47354 * 154.32785 * 4 3 2 25 25 H 1.08006 * 124.56144 * 179.97438 * 10 9 8 26 26 H 1.08003 * 122.36334 * 180.21580 * 11 10 9 27 27 H 0.96997 * 119.99510 * 356.19399 * 16 15 13 28 28 H 1.09006 * 117.49972 * 214.97251 * 21 3 2 29 29 H 1.09000 * 117.49816 * 359.97438 * 21 3 2 30 30 H 1.09003 * 117.49666 * 252.51411 * 22 21 3 31 31 H 1.08998 * 117.51904 * 107.48144 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2676 0.5253 -1.2768 5 8 2.4688 1.5733 -1.8297 6 6 2.9143 2.1487 -2.9668 7 8 3.9537 1.7698 -3.4737 8 6 2.1719 3.1950 -3.5697 9 16 0.6584 3.8529 -2.9626 10 6 0.5660 4.9926 -4.2958 11 6 1.6109 4.8596 -5.1056 12 6 2.5251 3.8682 -4.7417 13 6 3.6869 3.5808 -5.4777 14 1 4.5366 3.1265 -4.9898 15 6 3.7432 3.8840 -6.8467 16 7 2.6409 3.9737 -7.5418 17 14 5.3947 4.1593 -7.6752 18 1 5.1826 4.4630 -9.1133 19 1 6.0900 5.2998 -7.0262 20 1 6.2244 2.9346 -7.5445 21 6 3.3147 0.2825 1.3274 22 6 3.3150 -1.1327 0.7461 23 1 3.3547 -0.2854 -2.0003 24 1 4.2598 0.9103 -1.0415 25 1 -0.2311 5.7079 -4.4363 26 1 1.7424 5.4724 -5.9852 27 1 1.7875 3.7767 -7.1250 28 1 4.2497 0.8418 1.2910 29 1 2.6897 0.4680 2.2009 30 1 2.6901 -1.8786 1.2372 31 1 4.2499 -1.5048 0.3270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329988870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -34.257333 kcal Electronic energy + Delta-G solvation = -18266.221929 eV Core-core repulsion = 15218.204760 eV Total energy + Delta-G solvation = -3048.017169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20476 -39.57758 -38.77253 -36.89785 -36.50826 -35.11600 -31.25561 -29.45982 -27.75503 -24.82449 -24.15708 -23.46000 -22.59184 -21.02600 -19.57911 -18.90958 -18.21601 -17.25205 -16.99297 -16.47688 -16.05822 -15.63088 -15.18908 -15.06361 -14.84141 -14.72794 -14.20794 -13.92363 -13.78599 -13.64694 -13.35414 -12.86974 -12.75311 -12.60208 -12.41949 -12.10948 -11.88638 -11.77927 -11.71787 -11.54872 -11.08325 -10.93682 -10.80666 -9.78341 -9.40813 -9.35367 -6.74191 -0.06441 1.16547 1.35420 1.48214 1.48652 1.62784 1.64612 1.79719 1.83053 2.09551 2.22139 2.28187 2.71909 2.91092 3.01955 3.52352 3.81068 3.90898 4.19317 4.38391 4.44746 4.61574 4.68881 4.73704 4.93301 4.97468 5.08244 5.19121 5.20906 5.33606 5.59579 5.72342 5.91190 6.31569 6.48888 6.52792 7.35576 7.64763 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.005331 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.183539 B = 5250.987259 C = 6255.783115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.266 3.734 3 C -0.087 4.087 4 C 0.108 3.892 5 O -0.376 6.376 6 C 0.528 3.472 7 O -0.575 6.575 8 C -0.460 4.460 9 S 0.014 5.986 10 C -0.159 4.159 11 C -0.171 4.171 12 C 0.090 3.910 13 C -0.432 4.432 14 H 0.094 0.906 15 C 0.002 3.998 16 N -0.762 5.762 17 Si 1.122 2.878 18 H -0.258 1.258 19 H -0.254 1.254 20 H -0.263 1.263 21 C -0.125 4.125 22 C -0.104 4.104 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.187 0.813 26 H 0.134 0.866 27 H 0.293 0.707 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -3.422 9.263 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.050 4.050 3 C -0.091 4.091 4 C 0.033 3.967 5 O -0.295 6.295 6 C 0.386 3.614 7 O -0.475 6.475 8 C -0.576 4.576 9 S 0.271 5.729 10 C -0.294 4.294 11 C -0.204 4.204 12 C 0.080 3.920 13 C -0.462 4.462 14 H 0.112 0.888 15 C -0.220 4.220 16 N -0.383 5.383 17 Si 0.936 3.064 18 H -0.182 1.182 19 H -0.178 1.178 20 H -0.187 1.187 21 C -0.163 4.163 22 C -0.142 4.142 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.204 0.796 26 H 0.152 0.848 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.048 -3.475 8.956 10.078 hybrid contribution 0.005 -0.135 0.088 0.161 sum 3.053 -3.610 9.043 10.205 Atomic orbital electron populations 1.81176 1.13795 1.11133 1.09703 1.28039 0.93874 0.91304 0.91764 1.18530 0.81095 1.12893 0.96548 1.22076 0.93907 0.88666 0.92069 1.86173 1.53157 1.49825 1.40317 1.18238 0.83593 0.81309 0.78251 1.90673 1.26332 1.65902 1.64599 1.21262 1.07495 1.15995 1.12859 1.83258 1.23479 1.36720 1.29418 1.25712 1.02269 1.02987 0.98445 1.20399 0.96471 1.01122 1.02384 1.17298 0.92608 0.90485 0.91634 1.21302 0.99668 1.28637 0.96564 0.88796 1.29011 1.08163 0.89806 0.95051 1.70534 1.01266 1.26281 1.40237 0.82958 0.68055 0.79266 0.76137 1.18164 1.17775 1.18721 1.23538 1.01944 0.99292 0.91575 1.23489 1.02020 0.91192 0.97520 0.91581 0.88926 0.79602 0.84828 0.89406 0.84893 0.86629 0.85854 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -18.29 18.54 20.01 0.37 -17.92 16 2 C 0.27 8.62 14.39 89.44 1.29 9.91 16 3 C -0.09 -2.09 2.47 -53.99 -0.13 -2.23 16 4 C 0.11 3.47 5.49 71.98 0.40 3.86 16 5 O -0.38 -16.58 9.12 -59.20 -0.54 -17.12 16 6 C 0.53 27.38 7.73 68.69 0.53 27.91 16 7 O -0.58 -31.50 14.09 19.20 0.27 -31.23 16 8 C -0.46 -24.40 6.36 23.49 0.15 -24.25 16 9 S 0.01 0.65 23.02 -56.49 -1.30 -0.65 16 10 C -0.16 -6.56 11.11 66.64 0.74 -5.82 16 11 C -0.17 -7.96 8.03 21.44 0.17 -7.79 16 12 C 0.09 4.78 5.25 -22.03 -0.12 4.66 16 13 C -0.43 -22.99 8.34 23.33 0.19 -22.80 16 14 H 0.09 5.29 6.12 -2.91 -0.02 5.27 16 15 C 0.00 0.09 5.12 85.38 0.44 0.53 16 16 N -0.76 -36.97 12.53 21.89 0.27 -36.69 16 17 Si 1.12 39.61 30.00 68.60 2.06 41.67 16 18 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 19 H -0.25 -8.32 7.11 99.48 0.71 -7.62 16 20 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 21 C -0.13 -1.85 9.86 30.59 0.30 -1.54 16 22 C -0.10 -1.33 9.93 30.60 0.30 -1.03 16 23 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 24 H 0.09 2.65 7.88 -2.39 -0.02 2.63 16 25 H 0.19 5.94 8.06 -2.91 -0.02 5.92 16 26 H 0.13 6.02 6.83 -2.91 -0.02 6.00 16 27 H 0.29 14.72 6.49 -92.71 -0.60 14.12 16 28 H 0.13 1.56 8.05 -2.38 -0.02 1.54 16 29 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.59 298.68 6.74 -62.86 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.34 Total: 17.67 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 4.26 Total: -18.59 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.65 Total: -54.61 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.27 Total: -48.35 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.06 Total: 41.67 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -1.30 Total: -0.65 kcal Total: -69.59 6.74 -62.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329988870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.599 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds