Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46738 * 2 1 4 4 C 1.50695 * 109.47405 * 119.99976 * 2 1 3 5 5 H 1.08008 * 119.99875 * 119.99957 * 4 2 1 6 6 C 1.37879 * 120.00425 * 300.00029 * 4 2 1 7 7 N 1.31512 * 119.99654 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00264 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47210 * 60.00244 * 8 6 4 10 10 H 1.48494 * 109.47123 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47357 * 300.00129 * 8 6 4 12 12 O 1.45201 * 109.47012 * 240.00309 * 2 1 3 13 13 C 1.34795 * 116.99880 * 89.99479 * 12 2 1 14 14 O 1.21538 * 120.00445 * 359.72919 * 13 12 2 15 15 C 1.47236 * 119.99928 * 180.02562 * 13 12 2 16 16 N 1.29746 * 121.83850 * 359.75155 * 15 13 12 17 17 S 1.55997 * 111.73803 * 179.97438 * 16 15 13 18 18 C 1.76251 * 97.57047 * 0.02562 * 17 16 15 19 19 C 1.38696 * 134.17771 * 180.02562 * 18 17 16 20 20 C 1.36804 * 119.63164 * 179.97438 * 19 18 17 21 21 C 1.38898 * 120.30682 * 0.02562 * 20 19 18 22 22 C 1.36336 * 121.02951 * 359.95190 * 21 20 19 23 23 C 1.40399 * 119.96606 * 359.78323 * 22 21 20 24 24 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47042 * 299.99330 * 1 2 3 26 26 H 1.08991 * 109.47542 * 59.99742 * 1 2 3 27 27 H 0.97000 * 119.99738 * 179.97438 * 7 6 4 28 28 H 1.08001 * 120.18489 * 359.97438 * 19 18 17 29 29 H 1.08003 * 119.84690 * 179.97438 * 20 19 18 30 30 H 1.08001 * 119.48514 * 179.97438 * 21 20 19 31 31 H 1.07997 * 120.02054 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3216 -1.1204 4.0078 9 1 3.8066 -1.1209 4.0080 10 1 1.8262 -0.4207 5.2203 11 1 1.8261 -2.5203 4.0077 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0673 -2.2858 14 8 1.9924 1.2612 -2.2564 15 6 2.7074 -0.5591 -3.5250 16 7 2.9586 -1.8300 -3.5966 17 16 3.4627 -2.2404 -5.0147 18 6 3.3995 -0.6422 -5.7551 19 6 3.6935 -0.1496 -7.0178 20 6 3.5320 1.1837 -7.2783 21 6 3.0768 2.0417 -6.2854 22 6 2.7816 1.5787 -5.0375 23 6 2.9321 0.2144 -4.7419 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 0.7091 1.1613 3.4845 28 1 4.0479 -0.8149 -7.7913 29 1 3.7603 1.5710 -8.2603 30 1 2.9546 3.0920 -6.5054 31 1 2.4284 2.2603 -4.2779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342506772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = -31.185320 kcal Electronic energy + Delta-G solvation = -18344.177234 eV Core-core repulsion = 15296.293278 eV Total energy + Delta-G solvation = -3047.883957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49032 -39.09204 -36.97859 -35.73637 -33.24952 -31.25677 -30.73160 -29.64549 -26.35149 -25.30083 -23.32036 -22.79764 -21.17279 -19.73224 -18.74544 -17.39692 -16.78346 -16.16844 -15.68519 -15.53773 -15.32257 -14.69331 -14.43139 -14.27121 -13.91951 -13.05270 -12.50202 -12.33998 -12.16041 -11.97272 -11.80468 -11.27250 -11.12619 -11.00825 -10.84872 -10.80151 -10.39865 -10.27875 -9.93739 -9.81803 -9.57785 -9.21745 -8.93087 -8.49104 -7.99907 -6.18130 -4.24682 0.28849 0.94084 1.22999 1.56280 1.70639 3.20362 3.27894 3.29778 3.31877 3.44232 3.59794 4.23448 4.33717 4.62574 4.77298 5.05546 5.15003 5.23152 5.30681 5.57795 5.75665 5.88717 5.99935 6.22420 6.36324 6.58324 6.65474 6.87643 6.88382 7.07361 7.55909 7.69603 7.87746 8.11718 8.53169 8.85441 9.40269 10.89432 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.004358 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.519816 B = 6423.756161 C = 6999.951378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.050 0.950 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.331 6.331 13 C 0.529 3.471 14 O -0.503 6.503 15 C 0.110 3.890 16 N -0.452 5.452 17 S 0.380 5.620 18 C -0.202 4.202 19 C -0.074 4.074 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.042 4.042 23 C -0.086 4.086 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -0.856 -19.785 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.246 6.246 13 C 0.367 3.633 14 O -0.392 6.392 15 C -0.077 4.077 16 N -0.279 5.279 17 S 0.539 5.461 18 C -0.323 4.323 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.096 4.096 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.903 -2.672 -19.208 20.003 hybrid contribution -0.142 1.454 0.937 1.736 sum 4.762 -1.218 -18.271 18.920 Atomic orbital electron populations 1.22173 0.97295 1.00306 1.01505 1.20779 0.91589 0.94012 0.77455 0.93270 1.20983 1.32598 1.13572 0.88730 0.91247 1.24871 0.94894 0.95093 0.99006 1.69885 1.36032 1.22526 1.24316 0.86305 0.79235 0.79559 0.80878 1.19959 1.21001 1.19907 1.86686 1.74837 1.42552 1.20497 1.19812 0.75234 0.84707 0.83522 1.90772 1.48727 1.15503 1.84168 1.21246 1.04586 0.87582 0.94264 1.71657 1.16019 1.18462 1.21716 1.81395 1.60077 1.08023 0.96648 1.24316 1.07142 1.01466 0.99401 1.19910 1.00474 0.95860 0.93370 1.21059 0.97895 0.92958 0.99577 1.20909 0.99743 1.00537 0.92784 1.20892 0.95483 0.92599 0.97390 1.19570 1.03523 0.95785 0.90731 0.94306 0.88044 0.96420 0.92316 0.84856 0.84867 0.84850 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.90 2.56 -27.89 -0.07 5.83 16 3 H 0.05 1.46 7.17 -51.93 -0.37 1.09 16 4 C -0.52 -15.02 8.90 -34.44 -0.31 -15.32 16 5 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 O -0.33 -8.49 9.74 -40.75 -0.40 -8.89 16 13 C 0.53 12.03 7.92 34.39 0.27 12.30 16 14 O -0.50 -11.80 14.28 -19.29 -0.28 -12.07 16 15 C 0.11 2.09 6.82 -82.01 -0.56 1.53 16 16 N -0.45 -8.19 11.01 28.26 0.31 -7.88 16 17 S 0.38 4.93 23.36 -107.50 -2.51 2.42 16 18 C -0.20 -2.60 6.73 -38.50 -0.26 -2.86 16 19 C -0.07 -0.71 10.03 -39.93 -0.40 -1.11 16 20 C -0.09 -0.79 10.00 -39.86 -0.40 -1.18 16 21 C -0.12 -1.21 9.93 -40.02 -0.40 -1.61 16 22 C -0.04 -0.57 9.57 -39.45 -0.38 -0.95 16 23 C -0.09 -1.35 6.10 -105.09 -0.64 -1.99 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 29 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 2.20 6.64 -52.49 -0.35 1.85 16 LS Contribution 290.20 15.07 4.37 4.37 Total: -1.00 -31.73 290.20 -8.47 -40.20 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -2.69 Total: -2.42 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.89 Total: -7.36 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.94 Total: -32.68 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.67 Total: -20.96 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.51 Total: 2.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.73 -8.47 -40.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342506772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.014 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds