Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.34838 * 125.04115 * 320.48504 * 3 2 1 5 5 C 1.39134 * 113.62310 * 179.97438 * 4 3 2 6 6 C 1.47167 * 122.97891 * 179.97438 * 5 4 3 7 7 O 1.21542 * 119.99593 * 0.02562 * 6 5 4 8 8 O 1.34781 * 120.00063 * 179.97438 * 6 5 4 9 9 C 1.45198 * 117.00031 * 185.33871 * 8 6 5 10 10 C 1.50703 * 112.84767 * 54.08377 * 9 8 6 11 11 H 1.07990 * 120.00282 * 246.09688 * 10 9 8 12 12 C 1.37881 * 119.99386 * 66.09942 * 10 9 8 13 13 N 1.31510 * 120.00513 * 354.00434 * 12 10 9 14 14 Si 1.86802 * 119.99397 * 174.00271 * 12 10 9 15 15 H 1.48498 * 109.47270 * 59.99942 * 14 12 10 16 16 H 1.48504 * 109.46857 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47250 * 299.99778 * 14 12 10 18 18 C 1.53779 * 113.61553 * 185.28257 * 9 8 6 19 19 C 1.53784 * 87.07885 * 89.11643 * 18 9 8 20 20 C 1.53777 * 87.17168 * 25.39023 * 19 18 9 21 21 C 1.36652 * 114.04205 * 0.23312 * 5 4 3 22 22 S 1.70589 * 110.54726 * 359.64470 * 21 5 4 23 23 H 1.07996 * 123.18978 * 359.96492 * 4 3 2 24 24 H 0.96995 * 120.00011 * 185.03538 * 13 12 10 25 25 H 1.09004 * 113.61450 * 334.56965 * 18 9 8 26 26 H 1.08994 * 113.69355 * 203.67840 * 18 9 8 27 27 H 1.09002 * 113.61000 * 139.98673 * 19 18 9 28 28 H 1.09007 * 113.61492 * 270.79974 * 19 18 9 29 29 H 1.09005 * 113.61201 * 89.15937 * 20 19 18 30 30 H 1.09003 * 113.61472 * 220.05580 * 20 19 18 31 31 H 1.07994 * 124.72551 * 179.73619 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3426 -0.8507 0.7024 5 6 4.7063 -0.6379 0.5267 6 6 5.7363 -1.4484 1.1961 7 8 5.4097 -2.3513 1.9413 8 8 7.0417 -1.1900 0.9821 9 6 8.0008 -2.1020 1.5793 10 6 7.7495 -3.5409 1.2081 11 1 7.4499 -4.2496 1.9658 12 6 7.9023 -3.9523 -0.0990 13 7 8.1515 -3.0696 -1.0415 14 14 7.7555 -5.7638 -0.5310 15 1 6.4050 -6.2542 -0.1560 16 1 7.9587 -5.9424 -1.9912 17 1 8.7856 -6.5346 0.2105 18 6 9.4636 -1.6648 1.3955 19 6 9.3116 -0.8799 2.7092 20 6 8.2049 -1.8778 3.0886 21 6 5.0045 0.3939 -0.3182 22 16 3.5763 1.1103 -0.9157 23 1 2.9424 -1.6242 1.3410 24 1 8.1865 -3.3483 -1.9699 25 1 9.6234 -1.0303 0.5237 26 1 10.1773 -2.4862 1.4577 27 1 10.1886 -0.9342 3.3542 28 1 8.9514 0.1395 2.5696 29 1 8.5728 -2.7585 3.6150 30 1 7.3500 -1.4151 3.5818 31 1 6.0050 0.7106 -0.5733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344819991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = 3.194896 kcal Electronic energy + Delta-G solvation = -18753.224089 eV Core-core repulsion = 15706.830970 eV Total energy + Delta-G solvation = -3046.393119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.59222 -38.14831 -36.84344 -35.99452 -34.10708 -32.39077 -30.31518 -26.58231 -25.40506 -24.60861 -23.59573 -22.11857 -19.35782 -19.13555 -18.18520 -17.20088 -16.23321 -15.66804 -15.06896 -14.78461 -14.54376 -14.17720 -14.06582 -13.81977 -13.39865 -13.12684 -12.69008 -12.51391 -12.34496 -12.06460 -11.59521 -11.35495 -11.25957 -11.16155 -10.91081 -10.52362 -10.12995 -10.03801 -9.98134 -9.43064 -8.96264 -8.85546 -8.61987 -8.54224 -8.43171 -6.13938 -4.23339 0.38583 1.06920 1.68398 1.86009 2.80318 3.18028 3.26592 3.31201 3.36138 3.61935 3.93115 4.13657 4.35177 5.11912 5.17111 5.31808 5.50078 5.66451 5.71502 5.80311 6.00570 6.03586 6.24384 6.40662 6.43744 6.75145 6.79570 7.11853 7.21615 7.33976 7.47808 7.72815 7.83260 8.26145 8.79277 9.10003 9.45286 10.90316 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.005903 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.923366 B = 4741.962219 C = 5384.686178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.292 3.708 3 C -0.188 4.188 4 C -0.007 4.007 5 C -0.135 4.135 6 C 0.526 3.474 7 O -0.497 6.497 8 O -0.334 6.334 9 C 0.234 3.766 10 C -0.519 4.519 11 H 0.067 0.933 12 C 0.076 3.924 13 N -0.867 5.867 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.094 4.094 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.161 4.161 22 S 0.257 5.743 23 H 0.163 0.837 24 H 0.263 0.737 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 9.215 0.036 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.024 4.024 3 C -0.308 4.308 4 C -0.042 4.042 5 C -0.149 4.149 6 C 0.366 3.634 7 O -0.386 6.386 8 O -0.250 6.250 9 C 0.200 3.800 10 C -0.557 4.557 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.503 5.503 14 Si 0.717 3.283 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.131 4.131 19 C -0.189 4.189 20 C -0.190 4.190 21 C -0.300 4.300 22 S 0.524 5.476 23 H 0.180 0.820 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.996 10.182 -0.916 11.379 hybrid contribution 0.717 -2.355 0.602 2.534 sum -4.279 7.828 -0.314 8.926 Atomic orbital electron populations 1.81271 1.11132 1.08158 1.08737 1.24234 0.90831 0.93756 0.93597 1.19720 0.89360 1.08781 1.12914 1.20343 0.90940 0.96877 0.96062 1.18704 0.92973 0.99702 1.03486 1.19762 0.82981 0.81503 0.79104 1.90765 1.83026 1.29513 1.35270 1.86414 1.14241 1.54321 1.70043 1.20697 0.84603 0.87586 0.87084 1.21154 1.47305 0.92539 0.94667 0.91475 1.25053 0.93709 0.97692 0.96506 1.69986 1.46422 1.33660 1.00255 0.86676 0.79011 0.85369 0.77208 1.20040 1.21180 1.19866 1.22722 0.96526 0.98597 0.95305 1.22994 0.98547 0.98220 0.99176 1.23468 0.97598 0.98614 0.99314 1.26403 1.05148 0.99062 0.99408 1.82987 0.92707 1.30131 1.41792 0.81970 0.92706 0.91862 0.89914 0.92934 0.91311 0.90075 0.93077 0.79170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.22 18.54 41.84 0.78 -5.45 16 2 C 0.29 3.92 15.79 -22.47 -0.35 3.56 16 3 C -0.19 -2.38 6.24 -38.86 -0.24 -2.62 16 4 C -0.01 -0.11 9.71 -40.46 -0.39 -0.50 16 5 C -0.13 -2.27 5.82 -106.51 -0.62 -2.89 16 6 C 0.53 11.53 7.47 34.36 0.26 11.79 16 7 O -0.50 -12.17 15.14 -19.30 -0.29 -12.46 16 8 O -0.33 -7.73 9.52 -40.71 -0.39 -8.11 16 9 C 0.23 5.58 0.35 -90.87 -0.03 5.55 16 10 C -0.52 -13.83 6.82 -34.44 -0.24 -14.07 16 11 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 12 C 0.08 2.01 5.36 -17.82 -0.10 1.92 16 13 N -0.87 -23.24 12.80 55.43 0.71 -22.53 16 14 Si 0.89 20.88 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.09 -2.02 7.02 -25.92 -0.18 -2.20 16 19 C -0.15 -2.78 8.02 -25.92 -0.21 -2.99 16 20 C -0.15 -3.18 7.10 -25.83 -0.18 -3.36 16 21 C -0.16 -2.17 10.58 30.16 0.32 -1.85 16 22 S 0.26 2.67 23.03 -107.50 -2.48 0.19 16 23 H 0.16 2.34 7.98 -52.49 -0.42 1.92 16 24 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 25 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 26 H 0.08 1.79 8.10 -51.93 -0.42 1.37 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 30 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.19 2.43 8.00 -52.49 -0.42 2.01 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -29.65 300.96 -7.04 -36.69 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.91 Total: -1.05 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.97 Total: -7.67 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 1.48 Total: -27.98 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.68 Total: -20.58 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.48 Total: 0.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.65 -7.04 -36.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344819991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.889 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds