Wall clock time and date at job start Mon Mar 30 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.34838 * 125.04115 * 320.48504 * 3 2 1 5 5 C 1.39134 * 113.62310 * 179.97438 * 4 3 2 6 6 C 1.47167 * 122.97891 * 179.97438 * 5 4 3 7 7 O 1.21542 * 119.99593 * 0.02562 * 6 5 4 8 8 O 1.34781 * 120.00063 * 179.97438 * 6 5 4 9 9 C 1.45198 * 117.00031 * 185.33871 * 8 6 5 10 10 C 1.50703 * 112.84767 * 54.08377 * 9 8 6 11 11 H 1.07990 * 120.00282 * 246.09688 * 10 9 8 12 12 C 1.37881 * 119.99386 * 66.09942 * 10 9 8 13 13 N 1.31510 * 120.00513 * 354.00434 * 12 10 9 14 14 Si 1.86802 * 119.99397 * 174.00271 * 12 10 9 15 15 H 1.48498 * 109.47270 * 59.99942 * 14 12 10 16 16 H 1.48504 * 109.46857 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47250 * 299.99778 * 14 12 10 18 18 C 1.53779 * 113.61553 * 185.28257 * 9 8 6 19 19 C 1.53784 * 87.07885 * 89.11643 * 18 9 8 20 20 C 1.53777 * 87.17168 * 25.39023 * 19 18 9 21 21 C 1.36652 * 114.04205 * 0.23312 * 5 4 3 22 22 S 1.70589 * 110.54726 * 359.64470 * 21 5 4 23 23 H 1.07996 * 123.18978 * 359.96492 * 4 3 2 24 24 H 0.96995 * 120.00011 * 185.03538 * 13 12 10 25 25 H 1.09004 * 113.61450 * 334.56965 * 18 9 8 26 26 H 1.08994 * 113.69355 * 203.67840 * 18 9 8 27 27 H 1.09002 * 113.61000 * 139.98673 * 19 18 9 28 28 H 1.09007 * 113.61492 * 270.79974 * 19 18 9 29 29 H 1.09005 * 113.61201 * 89.15937 * 20 19 18 30 30 H 1.09003 * 113.61472 * 220.05580 * 20 19 18 31 31 H 1.07994 * 124.72551 * 179.73619 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3426 -0.8507 0.7024 5 6 4.7063 -0.6379 0.5267 6 6 5.7363 -1.4484 1.1961 7 8 5.4097 -2.3513 1.9413 8 8 7.0417 -1.1900 0.9821 9 6 8.0008 -2.1020 1.5793 10 6 7.7495 -3.5409 1.2081 11 1 7.4499 -4.2496 1.9658 12 6 7.9023 -3.9523 -0.0990 13 7 8.1515 -3.0696 -1.0415 14 14 7.7555 -5.7638 -0.5310 15 1 6.4050 -6.2542 -0.1560 16 1 7.9587 -5.9424 -1.9912 17 1 8.7856 -6.5346 0.2105 18 6 9.4636 -1.6648 1.3955 19 6 9.3116 -0.8799 2.7092 20 6 8.2049 -1.8778 3.0886 21 6 5.0045 0.3939 -0.3182 22 16 3.5763 1.1103 -0.9157 23 1 2.9424 -1.6242 1.3410 24 1 8.1865 -3.3483 -1.9699 25 1 9.6234 -1.0303 0.5237 26 1 10.1773 -2.4862 1.4577 27 1 10.1886 -0.9342 3.3542 28 1 8.9514 0.1395 2.5696 29 1 8.5728 -2.7585 3.6150 30 1 7.3500 -1.4151 3.5818 31 1 6.0050 0.7106 -0.5733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344819991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:18 Heat of formation + Delta-G solvation = -12.457060 kcal Electronic energy + Delta-G solvation = -18753.902809 eV Core-core repulsion = 15706.830970 eV Total energy + Delta-G solvation = -3047.071838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21213 -39.52531 -38.27559 -37.27447 -35.84659 -34.38989 -31.47185 -28.46965 -26.66088 -26.30474 -25.11890 -23.71337 -20.84604 -20.19251 -19.90367 -18.90174 -17.61561 -17.04833 -16.87081 -16.52366 -16.24149 -15.61097 -15.38427 -15.13761 -14.93385 -14.39339 -14.00538 -13.79329 -13.57739 -13.47641 -13.35609 -13.18762 -12.98589 -12.78203 -12.32723 -12.26358 -11.94592 -11.74905 -11.60881 -11.12219 -10.77712 -10.42468 -10.26921 -10.03441 -9.61997 -8.14491 -6.28548 -0.69974 0.07443 0.56130 0.62061 1.37692 1.39300 1.46528 1.68738 2.02137 2.19590 2.39393 2.51688 2.82733 3.18152 3.94922 4.03782 4.06528 4.17591 4.21703 4.41812 4.56638 4.72100 4.85867 4.91994 5.08546 5.10420 5.14924 5.41285 5.56331 5.70104 5.82253 5.96262 6.26522 6.44831 6.72621 7.33394 7.45435 8.88455 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.005903 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.923366 B = 4741.962219 C = 5384.686178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.309 3.691 3 C -0.195 4.195 4 C -0.016 4.016 5 C -0.172 4.172 6 C 0.518 3.482 7 O -0.539 6.539 8 O -0.339 6.339 9 C 0.210 3.790 10 C -0.536 4.536 11 H 0.043 0.957 12 C 0.039 3.961 13 N -0.884 5.884 14 Si 0.937 3.063 15 H -0.286 1.286 16 H -0.276 1.276 17 H -0.266 1.266 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.152 4.152 21 C -0.160 4.160 22 S 0.389 5.611 23 H 0.153 0.847 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 11.153 -0.992 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.006 4.006 3 C -0.315 4.315 4 C -0.051 4.051 5 C -0.186 4.186 6 C 0.361 3.639 7 O -0.431 6.431 8 O -0.255 6.255 9 C 0.175 3.825 10 C -0.573 4.573 11 H 0.061 0.939 12 C -0.164 4.164 13 N -0.521 5.521 14 Si 0.763 3.237 15 H -0.212 1.212 16 H -0.201 1.201 17 H -0.191 1.191 18 C -0.131 4.131 19 C -0.162 4.162 20 C -0.190 4.190 21 C -0.300 4.300 22 S 0.656 5.344 23 H 0.170 0.830 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.034 12.135 -1.951 13.282 hybrid contribution 0.658 -2.857 0.871 3.058 sum -4.376 9.278 -1.081 10.315 Atomic orbital electron populations 1.81297 1.11894 1.09062 1.09634 1.24180 0.90710 0.92950 0.92801 1.19786 0.89126 1.09376 1.13200 1.20147 0.90380 0.97608 0.96935 1.18369 0.92277 1.01643 1.06313 1.20592 0.83222 0.81454 0.78602 1.90725 1.83377 1.31661 1.37298 1.86369 1.15052 1.53892 1.70152 1.20931 0.85827 0.86633 0.89087 1.21270 1.47534 0.94064 0.94459 0.93887 1.25571 0.93709 1.00657 0.96485 1.70040 1.47127 1.34632 1.00275 0.85950 0.78339 0.81953 0.77451 1.21249 1.20099 1.19104 1.22658 0.94844 0.98731 0.96835 1.22856 0.98441 0.97730 0.97132 1.23428 0.98583 0.99499 0.97477 1.26659 1.07667 0.97850 0.97873 1.82645 0.88363 1.25882 1.37484 0.82982 0.92631 0.92679 0.90675 0.89845 0.89867 0.90322 0.93548 0.78398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.57 18.54 19.01 0.35 -12.22 16 2 C 0.31 7.73 15.79 88.33 1.39 9.12 16 3 C -0.19 -4.52 6.24 22.74 0.14 -4.38 16 4 C -0.02 -0.48 9.71 21.70 0.21 -0.26 16 5 C -0.17 -5.76 5.82 -21.09 -0.12 -5.88 16 6 C 0.52 23.34 7.47 70.17 0.52 23.86 16 7 O -0.54 -27.71 15.14 19.70 0.30 -27.41 16 8 O -0.34 -15.89 9.52 -56.92 -0.54 -16.43 16 9 C 0.21 10.15 0.35 -10.96 0.00 10.15 16 10 C -0.54 -29.42 6.82 25.60 0.17 -29.25 16 11 H 0.04 2.49 7.82 -2.92 -0.02 2.47 16 12 C 0.04 2.11 5.36 84.66 0.45 2.57 16 13 N -0.88 -47.75 12.80 21.45 0.27 -47.48 16 14 Si 0.94 43.43 29.54 68.60 2.03 45.46 16 15 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C -0.09 -3.97 7.02 31.12 0.22 -3.75 16 19 C -0.12 -4.34 8.02 31.12 0.25 -4.09 16 20 C -0.15 -6.38 7.10 31.18 0.22 -6.16 16 21 C -0.16 -3.97 10.58 67.45 0.71 -3.26 16 22 S 0.39 6.51 23.03 -56.49 -1.30 5.21 16 23 H 0.15 4.60 7.98 -2.91 -0.02 4.58 16 24 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 25 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 3.26 8.10 -2.39 -0.02 3.24 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.08 3.27 8.10 -2.38 -0.02 3.25 16 30 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 31 H 0.20 4.58 8.00 -2.91 -0.02 4.56 16 Total: -1.00 -66.03 300.96 6.45 -59.58 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.16 Total: 4.61 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 4.18 Total: -11.33 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.63 Total: -59.69 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.24 Total: -43.84 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.30 Total: 5.21 kcal Total: -66.03 6.45 -59.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344819991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.126 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds