Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.34844 * 125.04366 * 164.64900 * 3 2 1 5 5 C 1.39125 * 113.62872 * 179.73675 * 4 3 2 6 6 C 1.47167 * 122.97980 * 179.97438 * 5 4 3 7 7 O 1.21546 * 119.99938 * 359.97438 * 6 5 4 8 8 O 1.34779 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.45205 * 116.99785 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47065 * 329.99838 * 9 8 6 11 11 C 1.50698 * 109.46933 * 210.00107 * 9 8 6 12 12 H 1.07992 * 120.00279 * 0.02562 * 11 9 8 13 13 C 1.37876 * 119.99682 * 179.97438 * 11 9 8 14 14 N 1.31521 * 120.00078 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00135 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47620 * 89.99677 * 15 13 11 17 17 H 1.48497 * 109.47259 * 210.00203 * 15 13 11 18 18 H 1.48501 * 109.46860 * 329.99776 * 15 13 11 19 19 C 1.53003 * 109.47133 * 89.99996 * 9 8 6 20 20 C 1.52994 * 117.49701 * 8.74457 * 19 9 8 21 21 C 1.53002 * 117.49752 * 300.09007 * 19 9 8 22 22 C 1.36653 * 114.04027 * 359.97438 * 5 4 3 23 23 S 1.70588 * 110.54981 * 0.02562 * 22 5 4 24 24 H 1.08000 * 123.18623 * 359.73634 * 4 3 2 25 25 H 0.97003 * 119.99876 * 180.02562 * 14 13 11 26 26 H 1.08996 * 115.54900 * 154.41920 * 19 9 8 27 27 H 1.08998 * 117.50192 * 0.02562 * 20 19 9 28 28 H 1.09011 * 117.49688 * 145.01955 * 20 19 9 29 29 H 1.08999 * 117.49490 * 214.98026 * 21 19 9 30 30 H 1.08999 * 117.50042 * 359.97438 * 21 19 9 31 31 H 1.08001 * 124.72269 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3418 1.0656 -0.2923 5 6 4.7056 0.8022 -0.2137 6 6 5.7347 1.8169 -0.4916 7 8 5.4072 2.9442 -0.8066 8 8 7.0403 1.4960 -0.3967 9 6 8.0000 2.5470 -0.6844 10 1 7.5744 3.2386 -1.4116 11 6 9.2583 1.9380 -1.2471 12 1 9.3296 0.8681 -1.3760 13 6 10.3183 2.7468 -1.5982 14 7 10.2310 4.0498 -1.4426 15 14 11.8779 1.9920 -2.2964 16 1 11.7704 1.9126 -3.7753 17 1 13.0434 2.8357 -1.9293 18 1 12.0597 0.6275 -1.7394 19 6 8.3310 3.3022 0.6045 20 6 7.8009 2.7239 1.9180 21 6 7.1776 3.9940 1.3339 22 6 5.0048 -0.4822 0.1443 23 16 3.5774 -1.3838 0.3884 24 1 2.9408 2.0315 -0.5618 25 1 10.9766 4.6189 -1.6901 26 1 9.3053 3.7904 0.6263 27 1 7.2168 1.8052 1.8640 28 1 8.4265 2.8319 2.8042 29 1 7.3933 4.9371 1.8359 30 1 6.1831 3.9115 0.8954 31 1 6.0057 -0.8723 0.2562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350303041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = -12.171518 kcal Electronic energy + Delta-G solvation = -18384.829203 eV Core-core repulsion = 15337.769746 eV Total energy + Delta-G solvation = -3047.059456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54167 -39.30872 -38.06210 -37.30714 -36.45451 -34.83200 -31.65979 -29.82540 -26.78432 -25.56648 -24.27493 -23.14137 -21.42009 -20.43720 -20.19838 -18.75740 -18.46282 -17.54867 -17.18567 -16.88815 -16.37581 -15.71135 -15.35628 -15.15847 -14.74346 -14.35374 -14.24040 -13.92227 -13.61842 -13.55720 -13.39077 -13.19159 -12.97178 -12.76696 -12.30946 -12.28959 -12.17402 -11.93471 -11.42138 -11.31099 -11.00172 -10.44791 -10.38608 -10.08384 -9.69359 -8.22852 -6.38865 -0.74537 0.04358 0.39633 0.57951 1.45954 1.47102 1.58179 1.67877 1.92249 2.01549 2.25835 2.44846 2.80991 3.06127 3.20071 3.90760 4.03964 4.11664 4.14273 4.30764 4.33699 4.51902 4.79319 4.81660 4.88661 5.00209 5.08367 5.28256 5.34276 5.55818 5.61343 5.91974 6.12681 6.27496 6.66074 6.98669 7.31429 8.84475 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004455 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.053412 B = 6284.114619 C = 6693.755557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.308 3.692 3 C -0.194 4.194 4 C -0.013 4.013 5 C -0.173 4.173 6 C 0.510 3.490 7 O -0.544 6.544 8 O -0.346 6.346 9 C 0.257 3.743 10 H 0.007 0.993 11 C -0.541 4.541 12 H 0.072 0.928 13 C 0.018 3.982 14 N -0.914 5.914 15 Si 0.977 3.023 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.259 1.259 19 C -0.147 4.147 20 C -0.163 4.163 21 C -0.205 4.205 22 C -0.159 4.159 23 S 0.403 5.597 24 H 0.155 0.845 25 H 0.268 0.732 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -12.317 5.776 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.008 4.008 3 C -0.314 4.314 4 C -0.047 4.047 5 C -0.188 4.188 6 C 0.355 3.645 7 O -0.437 6.437 8 O -0.262 6.262 9 C 0.203 3.797 10 H 0.024 0.976 11 C -0.578 4.578 12 H 0.090 0.910 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.801 3.199 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.166 4.166 20 C -0.200 4.200 21 C -0.241 4.241 22 C -0.299 4.299 23 S 0.671 5.329 24 H 0.173 0.827 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.775 -13.343 6.087 18.199 hybrid contribution 1.694 2.264 -1.056 3.018 sum -9.081 -11.079 5.031 15.183 Atomic orbital electron populations 1.81324 1.12069 1.07858 1.10676 1.24200 0.90756 0.93334 0.92506 1.19801 0.89118 1.01872 1.20625 1.20140 0.90168 0.99711 0.94686 1.18076 0.91724 0.94091 1.14870 1.21050 0.83450 0.86796 0.73202 1.90772 1.83138 1.23853 1.45965 1.86508 1.15389 1.44891 1.79447 1.19747 0.84414 0.83671 0.91842 0.97572 1.21243 0.98490 0.94835 1.43249 0.90952 1.25777 1.01900 0.95125 0.95358 1.70118 1.33221 1.04471 1.47372 0.85263 0.77461 0.78730 0.78463 1.20044 1.20575 1.18335 1.22729 0.98395 1.02357 0.93119 1.22882 1.03701 0.96615 0.96798 1.23142 0.98525 0.96818 1.05663 1.26785 1.08192 0.96794 0.98176 1.82838 0.88068 1.05122 1.56881 0.82691 0.92287 0.87894 0.88706 0.88015 0.89113 0.89659 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.19 18.54 19.00 0.35 -10.84 16 2 C 0.31 6.49 15.79 88.33 1.39 7.88 16 3 C -0.19 -3.54 6.24 22.74 0.14 -3.40 16 4 C -0.01 -0.31 9.71 21.70 0.21 -0.10 16 5 C -0.17 -4.68 5.82 -21.09 -0.12 -4.80 16 6 C 0.51 19.95 6.87 70.17 0.48 20.43 16 7 O -0.54 -24.85 13.79 19.69 0.27 -24.58 16 8 O -0.35 -15.06 8.00 -56.90 -0.46 -15.52 16 9 C 0.26 13.32 2.41 29.85 0.07 13.40 16 10 H 0.01 0.39 7.16 -2.39 -0.02 0.38 16 11 C -0.54 -29.14 8.90 25.60 0.23 -28.91 16 12 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 13 C 0.02 0.98 5.20 84.65 0.44 1.42 16 14 N -0.91 -51.40 11.59 21.45 0.25 -51.15 16 15 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 C -0.15 -7.12 5.27 -10.79 -0.06 -7.17 16 20 C -0.16 -6.30 9.80 30.61 0.30 -6.00 16 21 C -0.20 -8.63 9.85 30.62 0.30 -8.33 16 22 C -0.16 -2.94 10.58 67.45 0.71 -2.23 16 23 S 0.40 4.69 23.03 -56.49 -1.30 3.39 16 24 H 0.16 3.78 7.99 -2.91 -0.02 3.76 16 25 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.10 5.53 6.46 -2.39 -0.02 5.52 16 27 H 0.09 3.44 6.91 -2.39 -0.02 3.42 16 28 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 29 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.09 3.77 5.36 -2.39 -0.01 3.75 16 31 H 0.21 3.32 8.00 -2.91 -0.02 3.30 16 Total: -1.00 -66.66 296.52 6.43 -60.24 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.18 Total: 12.86 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.10 Total: -17.82 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.60 Total: -61.99 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.18 Total: -40.10 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -66.66 6.43 -60.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350303041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds