Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36657 * 122.94656 * 129.36186 * 3 2 1 5 5 S 1.70605 * 110.55076 * 179.74825 * 4 3 2 6 6 C 1.75690 * 91.84688 * 0.35314 * 5 4 3 7 7 C 1.46530 * 125.06931 * 179.91083 * 6 5 4 8 8 O 1.21610 * 120.00458 * 179.69467 * 7 6 5 9 9 O 1.34884 * 119.99765 * 359.69525 * 7 6 5 10 10 C 1.45196 * 116.99889 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47267 * 329.99905 * 10 9 7 12 12 C 1.50706 * 109.47154 * 209.99979 * 10 9 7 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99932 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00092 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47203 * 59.99718 * 16 14 12 18 18 H 1.48497 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46911 * 300.00070 * 16 14 12 20 20 C 1.52996 * 109.47024 * 90.00450 * 10 9 7 21 21 C 1.52999 * 117.50016 * 8.74307 * 20 10 9 22 22 C 1.53007 * 117.49662 * 300.08254 * 20 10 9 23 23 C 1.35041 * 109.86134 * 359.64793 * 6 5 4 24 24 H 1.08003 * 124.72530 * 0.02562 * 4 3 2 25 25 H 0.96996 * 119.99893 * 180.02562 * 15 14 12 26 26 H 1.09007 * 115.55391 * 154.41987 * 20 10 9 27 27 H 1.08997 * 117.49916 * 0.02562 * 21 20 10 28 28 H 1.09002 * 117.50077 * 145.02737 * 21 20 10 29 29 H 1.09003 * 117.50129 * 214.98153 * 22 20 10 30 30 H 1.09000 * 117.49784 * 359.97438 * 22 20 10 31 31 H 1.08006 * 123.18305 * 180.29129 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3109 0.7283 -0.8866 5 16 4.9772 0.5022 -0.5991 6 6 4.6561 -0.5995 0.7313 7 6 5.6813 -1.2636 1.5407 8 8 5.3544 -2.0066 2.4461 9 8 6.9878 -1.0507 1.2814 10 6 7.9480 -1.7412 2.1237 11 1 7.5206 -1.8898 3.1153 12 6 9.2031 -0.9146 2.2363 13 1 9.2720 0.0348 1.7262 14 6 10.2634 -1.3706 2.9906 15 7 10.1797 -2.5270 3.6113 16 14 11.8189 -0.3458 3.1308 17 1 11.4911 0.9718 3.7323 18 1 12.8010 -1.0520 3.9922 19 1 12.4009 -0.1421 1.7799 20 6 8.2855 -3.0991 1.5049 21 6 7.7599 -3.3840 0.0965 22 6 7.1363 -4.0890 1.3038 23 6 3.3236 -0.7384 0.9005 24 1 2.9003 1.3620 -1.6588 25 1 10.9255 -2.8475 4.1422 26 1 9.2608 -3.5074 1.7702 27 1 7.1739 -2.6038 -0.3893 28 1 8.3891 -3.9800 -0.5646 29 1 7.3556 -5.1485 1.4364 30 1 6.1399 -3.7730 1.6127 31 1 2.8868 -1.3647 1.6644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350310894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = 3.386902 kcal Electronic energy + Delta-G solvation = -18354.817404 eV Core-core repulsion = 15308.432611 eV Total energy + Delta-G solvation = -3046.384793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94279 -38.57968 -36.63380 -35.92443 -34.81288 -32.87680 -30.53764 -27.99899 -25.89744 -23.96492 -22.79461 -21.50206 -19.95062 -19.39407 -18.54606 -17.29545 -16.87846 -16.17984 -15.96241 -15.35200 -14.76087 -14.41804 -13.94259 -13.84880 -13.70056 -13.13153 -12.81856 -12.65927 -12.45200 -12.34677 -11.76880 -11.49997 -11.19089 -11.15768 -10.98925 -10.64165 -10.38885 -10.17409 -10.02767 -9.56869 -9.23083 -9.20220 -8.81660 -8.60526 -8.51198 -6.25097 -4.33070 0.16291 1.17614 1.44967 1.58150 2.50248 3.09539 3.21810 3.23578 3.27675 3.36441 3.36988 3.92226 4.27511 4.60339 4.86899 4.98009 5.07760 5.27630 5.52807 5.79609 5.83837 5.84862 6.02516 6.07921 6.40557 6.60445 6.74560 6.95174 7.09342 7.29584 7.44269 7.50729 7.72738 8.01208 8.40007 8.75644 9.31597 10.81960 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.004641 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.696983 B = 6031.937312 C = 6440.963689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.279 3.721 3 C -0.061 4.061 4 C -0.206 4.206 5 S 0.329 5.671 6 C -0.240 4.240 7 C 0.524 3.476 8 O -0.497 6.497 9 O -0.346 6.346 10 C 0.251 3.749 11 H 0.055 0.945 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.911 3.089 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.117 4.117 21 C -0.194 4.194 22 C -0.210 4.210 23 C -0.031 4.031 24 H 0.181 0.819 25 H 0.268 0.732 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 4.996 -9.125 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.038 4.038 3 C -0.079 4.079 4 C -0.349 4.349 5 S 0.599 5.401 6 C -0.359 4.359 7 C 0.366 3.634 8 O -0.387 6.387 9 O -0.262 6.262 10 C 0.199 3.801 11 H 0.073 0.927 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.737 3.263 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.231 4.231 22 C -0.247 4.247 23 C -0.063 4.063 24 H 0.199 0.801 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.209 5.202 -9.392 13.515 hybrid contribution -0.123 -0.321 0.825 0.894 sum -8.332 4.881 -8.566 12.909 Atomic orbital electron populations 1.81256 1.11752 1.08625 1.08141 1.24988 0.91748 0.93477 0.93572 1.14972 0.85844 1.05658 1.01470 1.26245 1.01006 1.03992 1.03628 1.83648 0.98297 1.35207 1.22983 1.23497 0.96266 1.09884 1.06265 1.19526 0.83524 0.78893 0.81411 1.90838 1.82905 1.35088 1.29909 1.86583 1.14098 1.66440 1.59118 1.20240 0.84184 0.87334 0.88376 0.92708 1.20879 0.97707 1.05618 1.31673 0.91073 1.24892 0.98754 0.95334 0.94749 1.69964 1.32373 1.18866 1.30890 0.86351 0.81619 0.79999 0.78303 1.19917 1.21044 1.19857 1.23041 0.98818 0.96260 0.95468 1.22801 1.04995 1.03169 0.92099 1.23164 0.99868 0.97930 1.03776 1.20244 0.90727 0.97316 0.98007 0.80129 0.92237 0.85107 0.89871 0.90305 0.90407 0.88868 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.73 18.54 41.84 0.78 -4.95 16 2 C 0.28 3.23 15.55 -22.47 -0.35 2.88 16 3 C -0.06 -0.63 5.67 -108.31 -0.61 -1.25 16 4 C -0.21 -1.69 10.82 30.16 0.33 -1.36 16 5 S 0.33 3.34 22.87 -107.50 -2.46 0.88 16 6 C -0.24 -3.40 6.38 -37.38 -0.24 -3.64 16 7 C 0.52 10.02 6.88 34.07 0.23 10.26 16 8 O -0.50 -10.74 13.89 -19.35 -0.27 -11.01 16 9 O -0.35 -7.39 8.21 -41.00 -0.34 -7.73 16 10 C 0.25 6.23 2.41 -27.88 -0.07 6.16 16 11 H 0.06 1.53 7.16 -51.93 -0.37 1.15 16 12 C -0.52 -13.64 8.90 -34.44 -0.31 -13.95 16 13 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 14 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 15 N -0.88 -23.90 11.59 55.43 0.64 -23.26 16 16 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.12 -2.75 5.27 -90.62 -0.48 -3.22 16 21 C -0.19 -3.83 9.80 -26.69 -0.26 -4.09 16 22 C -0.21 -4.38 9.85 -26.69 -0.26 -4.64 16 23 C -0.03 -0.38 9.72 -40.49 -0.39 -0.77 16 24 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.13 3.36 6.46 -51.93 -0.34 3.03 16 27 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.99 5.36 -51.93 -0.28 1.71 16 31 H 0.16 1.95 8.03 -52.48 -0.42 1.52 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -29.05 296.79 -7.28 -36.33 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -2.58 Total: 2.26 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.50 Total: -12.00 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 1.42 Total: -28.21 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.61 Total: -18.74 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.46 Total: 0.88 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.05 -7.28 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350310894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.718 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds