Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36657 * 122.94656 * 129.36186 * 3 2 1 5 5 S 1.70605 * 110.55076 * 179.74825 * 4 3 2 6 6 C 1.75690 * 91.84688 * 0.35314 * 5 4 3 7 7 C 1.46530 * 125.06931 * 179.91083 * 6 5 4 8 8 O 1.21610 * 120.00458 * 179.69467 * 7 6 5 9 9 O 1.34884 * 119.99765 * 359.69525 * 7 6 5 10 10 C 1.45196 * 116.99889 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47267 * 329.99905 * 10 9 7 12 12 C 1.50706 * 109.47154 * 209.99979 * 10 9 7 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99932 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00092 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47203 * 59.99718 * 16 14 12 18 18 H 1.48497 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46911 * 300.00070 * 16 14 12 20 20 C 1.52996 * 109.47024 * 90.00450 * 10 9 7 21 21 C 1.52999 * 117.50016 * 8.74307 * 20 10 9 22 22 C 1.53007 * 117.49662 * 300.08254 * 20 10 9 23 23 C 1.35041 * 109.86134 * 359.64793 * 6 5 4 24 24 H 1.08003 * 124.72530 * 0.02562 * 4 3 2 25 25 H 0.96996 * 119.99893 * 180.02562 * 15 14 12 26 26 H 1.09007 * 115.55391 * 154.41987 * 20 10 9 27 27 H 1.08997 * 117.49916 * 0.02562 * 21 20 10 28 28 H 1.09002 * 117.50077 * 145.02737 * 21 20 10 29 29 H 1.09003 * 117.50129 * 214.98153 * 22 20 10 30 30 H 1.09000 * 117.49784 * 359.97438 * 22 20 10 31 31 H 1.08006 * 123.18305 * 180.29129 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3109 0.7283 -0.8866 5 16 4.9772 0.5022 -0.5991 6 6 4.6561 -0.5995 0.7313 7 6 5.6813 -1.2636 1.5407 8 8 5.3544 -2.0066 2.4461 9 8 6.9878 -1.0507 1.2814 10 6 7.9480 -1.7412 2.1237 11 1 7.5206 -1.8898 3.1153 12 6 9.2031 -0.9146 2.2363 13 1 9.2720 0.0348 1.7262 14 6 10.2634 -1.3706 2.9906 15 7 10.1797 -2.5270 3.6113 16 14 11.8189 -0.3458 3.1308 17 1 11.4911 0.9718 3.7323 18 1 12.8010 -1.0520 3.9922 19 1 12.4009 -0.1421 1.7799 20 6 8.2855 -3.0991 1.5049 21 6 7.7599 -3.3840 0.0965 22 6 7.1363 -4.0890 1.3038 23 6 3.3236 -0.7384 0.9005 24 1 2.9003 1.3620 -1.6588 25 1 10.9255 -2.8475 4.1422 26 1 9.2608 -3.5074 1.7702 27 1 7.1739 -2.6038 -0.3893 28 1 8.3891 -3.9800 -0.5646 29 1 7.3556 -5.1485 1.4364 30 1 6.1399 -3.7730 1.6127 31 1 2.8868 -1.3647 1.6644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350310894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -11.875674 kcal Electronic energy + Delta-G solvation = -18355.479239 eV Core-core repulsion = 15308.432611 eV Total energy + Delta-G solvation = -3047.046628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47949 -39.61743 -38.19569 -36.98671 -36.47469 -34.83744 -31.62029 -29.82543 -26.87891 -25.59138 -24.29913 -23.15153 -21.42354 -20.77087 -19.85549 -18.74294 -18.21044 -17.67889 -17.53901 -16.86198 -16.40822 -15.71396 -15.30117 -14.96792 -14.60396 -14.54674 -14.30798 -13.84015 -13.56452 -13.45469 -13.39530 -13.22888 -13.00034 -12.73986 -12.30663 -12.19674 -12.05840 -11.96201 -11.60917 -11.32927 -11.03476 -10.45088 -10.40358 -10.14630 -9.67184 -8.22907 -6.39207 -0.74599 0.28556 0.45317 0.70256 1.45980 1.49496 1.54695 1.58440 1.76059 1.91391 2.40179 2.44284 2.99229 3.06052 3.19086 3.77551 3.94881 4.10585 4.18451 4.29264 4.32202 4.56884 4.78545 4.79946 4.89124 4.97670 5.03043 5.26468 5.33075 5.53551 5.60486 5.87338 6.09775 6.40220 6.63375 6.89497 7.30605 8.84165 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.004641 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.696983 B = 6031.937312 C = 6440.963689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.303 3.697 3 C -0.077 4.077 4 C -0.158 4.158 5 S 0.377 5.623 6 C -0.290 4.290 7 C 0.522 3.478 8 O -0.535 6.535 9 O -0.348 6.348 10 C 0.258 3.742 11 H 0.008 0.992 12 C -0.542 4.542 13 H 0.073 0.927 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 0.977 3.023 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.262 1.262 20 C -0.147 4.147 21 C -0.164 4.164 22 C -0.204 4.204 23 C -0.011 4.011 24 H 0.226 0.774 25 H 0.269 0.731 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 6.595 -11.668 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.014 4.014 3 C -0.094 4.094 4 C -0.301 4.301 5 S 0.646 5.354 6 C -0.408 4.408 7 C 0.367 3.633 8 O -0.428 6.428 9 O -0.264 6.264 10 C 0.204 3.796 11 H 0.026 0.974 12 C -0.580 4.580 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.551 5.551 16 Si 0.800 3.200 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.166 4.166 21 C -0.201 4.201 22 C -0.241 4.241 23 C -0.044 4.044 24 H 0.242 0.758 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.388 6.809 -11.951 16.111 hybrid contribution -0.162 -0.768 1.570 1.755 sum -8.550 6.042 -10.381 14.744 Atomic orbital electron populations 1.81292 1.12813 1.10025 1.09437 1.24963 0.91625 0.92341 0.92466 1.14755 0.85139 1.07083 1.02425 1.26754 0.99851 1.01258 1.02189 1.83560 0.98902 1.32854 1.20095 1.23118 0.95305 1.13333 1.09080 1.20222 0.83221 0.78437 0.81397 1.90806 1.83091 1.37053 1.31871 1.86540 1.15145 1.66351 1.58404 1.19786 0.84267 0.88440 0.87067 0.97383 1.21205 0.98615 1.06003 1.32157 0.90918 1.25765 1.01816 0.96331 0.94121 1.70103 1.33239 1.20384 1.31381 0.85320 0.77576 0.78379 0.78685 1.19326 1.20805 1.18686 1.22743 0.98540 0.96330 0.98991 1.22889 1.03729 1.02679 0.90779 1.23149 0.98476 0.98179 1.04316 1.20273 0.90274 0.96305 0.97538 0.75768 0.92240 0.87721 0.88868 0.87870 0.88991 0.89731 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.76 18.54 19.00 0.35 -11.41 16 2 C 0.30 6.32 15.55 88.33 1.37 7.69 16 3 C -0.08 -1.37 5.67 -22.26 -0.13 -1.50 16 4 C -0.16 -1.85 10.82 67.45 0.73 -1.12 16 5 S 0.38 6.44 22.87 -56.49 -1.29 5.14 16 6 C -0.29 -7.96 6.38 23.70 0.15 -7.81 16 7 C 0.52 20.49 6.88 69.98 0.48 20.97 16 8 O -0.54 -24.44 13.89 19.48 0.27 -24.17 16 9 O -0.35 -15.20 8.21 -57.99 -0.48 -15.68 16 10 C 0.26 13.34 2.41 29.85 0.07 13.41 16 11 H 0.01 0.50 7.16 -2.39 -0.02 0.49 16 12 C -0.54 -29.15 8.90 25.60 0.23 -28.92 16 13 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 14 C 0.02 1.05 5.20 84.65 0.44 1.49 16 15 N -0.91 -51.11 11.59 21.45 0.25 -50.86 16 16 Si 0.98 41.22 29.54 68.60 2.03 43.25 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 C -0.15 -7.09 5.27 -10.79 -0.06 -7.15 16 21 C -0.16 -6.33 9.80 30.62 0.30 -6.03 16 22 C -0.20 -8.58 9.85 30.62 0.30 -8.28 16 23 C -0.01 -0.25 9.72 21.68 0.21 -0.03 16 24 H 0.23 0.74 8.06 -2.91 -0.02 0.72 16 25 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.10 5.59 6.46 -2.38 -0.02 5.58 16 27 H 0.09 3.39 6.91 -2.39 -0.02 3.38 16 28 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.08 3.72 5.36 -2.39 -0.01 3.71 16 31 H 0.16 3.76 8.03 -2.91 -0.02 3.74 16 Total: -1.00 -66.80 296.79 6.41 -60.38 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.18 Total: 10.60 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 4.11 Total: -17.26 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.60 Total: -62.27 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.21 Total: -39.84 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.29 Total: 5.14 kcal Total: -66.80 6.41 -60.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350310894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.509 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds