Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48501 * 109.46876 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46925 * 120.00120 * 3 2 1 6 6 H 1.48496 * 109.47291 * 240.00486 * 3 2 1 7 7 C 1.38892 * 119.99918 * 180.28151 * 2 1 3 8 8 H 1.08000 * 119.99769 * 160.06723 * 7 2 1 9 9 N 1.37510 * 120.00356 * 340.06173 * 7 2 1 10 10 C 1.33786 * 124.17757 * 146.85385 * 9 7 2 11 11 O 1.21523 * 123.77385 * 0.04032 * 10 9 7 12 12 N 1.34529 * 112.45853 * 179.86799 * 10 9 7 13 13 C 1.47317 * 106.61626 * 0.38050 * 12 10 9 14 14 H 1.09004 * 110.59668 * 118.30484 * 13 12 10 15 15 C 1.52995 * 110.59905 * 241.24892 * 13 12 10 16 16 C 1.52993 * 109.47730 * 289.17644 * 15 13 12 17 17 S 1.81389 * 109.47533 * 179.97438 * 16 15 13 18 18 N 1.65605 * 104.45285 * 179.97438 * 17 16 15 19 19 O 1.42105 * 110.54622 * 291.62780 * 17 16 15 20 20 O 1.42105 * 110.54318 * 68.37676 * 17 16 15 21 21 C 1.34771 * 124.17637 * 327.15702 * 9 7 2 22 22 O 1.21232 * 127.15537 * 359.92443 * 21 9 7 23 23 H 0.97004 * 120.00068 * 359.72283 * 1 2 3 24 24 H 0.97002 * 126.69157 * 180.12665 * 12 10 9 25 25 H 1.09007 * 109.46623 * 49.17630 * 15 13 12 26 26 H 1.08998 * 109.47352 * 169.17247 * 15 13 12 27 27 H 1.09001 * 109.46754 * 300.00032 * 16 15 13 28 28 H 1.09008 * 109.47229 * 59.99407 * 16 15 13 29 29 H 0.97000 * 119.99667 * 149.99928 * 18 17 16 30 30 H 0.96997 * 119.99908 * 330.00529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 1.2827 2.7464 0.0006 5 1 3.1015 1.6964 1.2125 6 1 3.1014 1.6966 -1.2125 7 6 2.0083 -1.2028 -0.0059 8 1 3.0397 -1.2293 -0.3249 9 7 1.3826 -2.3600 0.3945 10 6 1.6404 -3.5693 -0.1164 11 8 2.4589 -3.7725 -0.9914 12 7 0.8950 -4.5358 0.4493 13 6 0.0373 -3.8757 1.4486 14 1 -1.0153 -4.0085 1.1982 15 6 0.3307 -4.4148 2.8501 16 6 -0.1878 -5.8497 2.9636 17 16 0.1608 -6.4891 4.6249 18 7 -0.4459 -8.0299 4.6104 19 8 1.5590 -6.6641 4.8086 20 8 -0.6265 -5.8122 5.5951 21 6 0.4297 -2.4152 1.3460 22 8 -0.0195 -1.4894 1.9869 23 1 -0.4850 0.8401 0.0041 24 1 0.9154 -5.4822 0.2375 25 1 1.4064 -4.4022 3.0263 26 1 -0.1662 -3.7892 3.5915 27 1 -1.2634 -5.8623 2.7873 28 1 0.3092 -6.4754 2.2221 29 1 -0.0395 -8.7163 5.1624 30 1 -1.2075 -8.2460 4.0501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473035234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = -110.499542 kcal Electronic energy + Delta-G solvation = -19866.190106 eV Core-core repulsion = 16404.017563 eV Total energy + Delta-G solvation = -3462.172542 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.061 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21666 -37.17137 -37.15093 -36.08908 -35.75287 -34.35102 -33.45663 -32.79574 -31.32460 -27.28674 -25.50393 -22.92648 -21.06610 -20.59134 -19.61001 -17.85223 -17.65224 -17.44454 -16.62988 -16.29096 -15.94740 -15.64776 -15.00717 -14.86691 -14.43034 -14.07650 -13.74822 -13.27562 -12.96534 -12.55706 -12.34649 -12.27318 -12.23828 -12.11162 -11.68770 -11.39577 -11.06907 -11.02899 -10.86362 -10.63784 -10.43856 -9.73657 -9.33825 -8.83658 -8.83049 -8.00510 -6.46486 -4.22617 0.02987 2.64924 2.88088 3.21249 3.25818 3.27561 3.45733 3.50885 4.05947 4.08243 4.18971 4.34480 4.60253 4.68249 4.85824 5.09482 5.23288 5.28927 5.37854 5.66581 5.76502 5.93373 6.52841 6.74504 7.40330 7.52215 7.91085 8.13708 8.67618 8.96608 9.15047 9.72491 10.63492 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.031292 B = 0.004873 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.578342 B = 5744.528276 C = 6153.307982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.058 3.942 3 Si 0.933 3.067 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.354 4.354 8 H 0.104 0.896 9 N -0.405 5.405 10 C 0.676 3.324 11 O -0.569 6.569 12 N -0.745 5.745 13 C 0.102 3.898 14 H 0.111 0.889 15 C -0.109 4.109 16 C -0.621 4.621 17 S 2.616 3.384 18 N -1.253 6.253 19 O -0.960 6.960 20 O -0.958 6.958 21 C 0.489 3.511 22 O -0.458 6.458 23 H 0.274 0.726 24 H 0.421 0.579 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.419 0.581 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -14.588 6.544 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.153 4.153 3 Si 0.758 3.242 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.122 0.878 9 N -0.137 5.137 10 C 0.380 3.620 11 O -0.446 6.446 12 N -0.410 5.410 13 C -0.010 4.010 14 H 0.128 0.872 15 C -0.149 4.149 16 C -0.750 4.750 17 S 2.707 3.293 18 N -0.925 5.925 19 O -0.950 6.950 20 O -0.947 6.947 21 C 0.275 3.725 22 O -0.328 6.328 23 H 0.084 0.916 24 H 0.263 0.737 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.248 0.752 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.132 -13.307 7.168 15.670 hybrid contribution -0.334 -0.338 -0.938 1.052 sum -4.466 -13.646 6.230 15.651 Atomic orbital electron populations 1.69893 1.06530 1.28771 1.40950 1.25336 0.95207 1.00147 0.94656 0.85927 0.79094 0.80019 0.79164 1.20737 1.19455 1.19614 1.19329 0.96674 0.82001 1.49899 0.87843 1.41821 1.34702 1.06733 1.30453 1.16423 0.81993 0.82084 0.81503 1.90822 1.37447 1.83606 1.32757 1.45536 1.43438 1.09518 1.42516 1.21903 0.97129 0.93496 0.88437 0.87167 1.21466 1.03479 0.91540 0.98430 1.30476 1.11946 1.08142 1.24472 1.04752 0.74321 0.73429 0.76808 1.53268 1.47347 1.31229 1.60632 1.93622 1.31667 1.84474 1.85208 1.93636 1.71225 1.74002 1.55874 1.20062 0.82651 0.88387 0.81372 1.90625 1.55247 1.41771 1.45200 0.91574 0.73739 0.89050 0.87879 0.84322 0.84593 0.75169 0.76180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.50 11.19 55.49 0.62 -22.87 16 2 C 0.06 1.58 4.81 -17.50 -0.08 1.50 16 3 Si 0.93 21.10 29.60 -169.99 -5.03 16.07 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.35 -9.90 9.46 -14.76 -0.14 -10.04 16 8 H 0.10 2.88 7.90 -52.49 -0.41 2.47 16 9 N -0.41 -10.46 2.69 -65.57 -0.18 -10.64 16 10 C 0.68 15.83 8.57 -88.02 -0.75 15.08 16 11 O -0.57 -14.96 17.62 5.35 0.09 -14.87 16 12 N -0.74 -12.51 6.06 -59.20 -0.36 -12.87 16 13 C 0.10 1.67 3.65 -68.21 -0.25 1.42 16 14 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 15 C -0.11 -1.42 4.96 -26.74 -0.13 -1.55 16 16 C -0.62 -4.88 6.11 37.15 0.23 -4.66 16 17 S 2.62 24.32 5.97 -107.50 -0.64 23.68 16 18 N -1.25 -6.52 9.36 60.35 0.57 -5.96 16 19 O -0.96 -12.85 18.10 -57.54 -1.04 -13.89 16 20 O -0.96 -12.78 18.10 -57.54 -1.04 -13.82 16 21 C 0.49 11.56 6.91 -10.56 -0.07 11.49 16 22 O -0.46 -12.14 15.41 5.60 0.09 -12.05 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.42 5.33 8.61 -40.82 -0.35 4.98 16 25 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 26 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.14 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.14 0.78 7.68 -51.92 -0.40 0.39 16 29 H 0.42 1.86 8.96 -34.47 -0.31 1.55 16 30 H 0.41 0.93 8.96 -34.47 -0.31 0.62 16 LS Contribution 282.92 15.07 4.26 4.26 Total: -1.00 -40.16 282.92 -6.48 -46.64 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.61 Total: 3.08 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -1.21 Total: 13.24 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.65 Total: -52.34 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -1.90 Total: -54.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 24.32 SS G_CDS: -0.64 Total: 23.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -40.16 -6.48 -46.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473035234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.861 kcal (2) G-P(sol) polarization free energy of solvation -40.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds