Wall clock time and date at job start Mon Mar 30 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48505 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47084 * 299.99534 * 3 2 1 6 6 H 1.48499 * 109.47270 * 59.99832 * 3 2 1 7 7 C 1.38806 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00038 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.20827 * 119.99990 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00164 * 180.02562 * 11 10 9 14 14 C 1.45195 * 117.00617 * 180.02562 * 13 11 10 15 15 C 1.47198 * 109.47689 * 180.02562 * 14 13 11 16 16 C 9.90279 * 106.90547 * 179.97438 * 2 1 3 17 17 C 9.79809 * 140.14441 * 180.02562 * 7 1 2 18 18 C 1.39539 * 119.74099 * 207.95688 * 17 16 15 19 19 C 1.38349 * 119.05033 * 180.02562 * 18 17 16 20 20 C 1.38818 * 118.52828 * 0.02562 * 19 18 17 21 21 C 1.38264 * 119.39973 * 0.27745 * 20 19 18 22 22 N 1.31736 * 120.91631 * 359.41836 * 21 20 19 23 23 H 0.97004 * 119.99897 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46777 * 59.99633 * 10 9 7 25 25 H 1.09002 * 109.46958 * 299.99928 * 10 9 7 26 26 H 1.09001 * 109.46895 * 59.99518 * 14 13 11 27 27 H 1.09009 * 109.46750 * 300.00283 * 14 13 11 28 28 H 1.08001 * 120.47564 * 0.02562 * 18 17 16 29 29 H 1.08002 * 120.73522 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.29626 * 179.97438 * 20 19 18 31 31 H 1.08008 * 119.53815 * 179.70442 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7954 -5.5015 0.0011 13 8 2.8405 -6.3390 0.0018 14 6 2.2609 -7.6702 0.0018 15 6 3.3374 -8.6742 0.0032 16 6 4.1959 -9.4749 0.0042 17 6 5.2433 -10.4514 0.0019 18 6 6.4801 -10.1414 0.5687 19 6 7.4820 -11.0955 0.5581 20 6 7.2163 -12.3295 -0.0194 21 6 5.9700 -12.5676 -0.5688 22 7 5.0305 -11.6445 -0.5410 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7314 0.8905 25 1 3.1244 -3.7314 -0.8895 26 1 1.6451 -7.7984 -0.8884 27 1 1.6442 -7.7980 0.8916 28 1 6.6528 -9.1707 1.0094 29 1 8.4494 -10.8847 0.9896 30 1 7.9778 -13.0950 -0.0436 31 1 5.7624 -13.5253 -1.0230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515267104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:16 Heat of formation + Delta-G solvation = -17.698214 kcal Electronic energy + Delta-G solvation = -16481.572568 eV Core-core repulsion = 13434.273457 eV Total energy + Delta-G solvation = -3047.299112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57467 -41.10380 -37.85477 -35.36371 -34.60497 -33.51977 -32.46824 -31.31397 -28.55117 -27.66334 -24.74235 -24.46948 -22.61515 -20.01629 -19.74092 -18.75991 -17.86130 -17.80791 -17.34457 -16.89686 -16.85827 -16.10046 -15.73550 -15.56844 -15.13288 -14.92561 -14.56805 -14.14467 -13.87860 -13.81633 -13.16942 -12.91844 -12.87002 -12.65729 -12.58908 -12.12002 -11.76345 -11.66699 -11.50079 -11.16968 -10.93634 -10.56517 -10.37202 -9.80316 -8.72742 -8.37173 -6.16462 -0.38704 0.25517 0.65240 1.07044 1.27472 1.42790 1.45017 1.56491 1.61861 2.03645 2.23991 2.64633 2.91388 2.98113 3.29094 3.62051 3.80299 3.94026 4.00252 4.09562 4.12328 4.15337 4.20910 4.24058 4.45551 4.61717 4.77569 5.09719 5.14178 5.17800 5.42471 5.65677 6.11153 6.19089 6.60338 6.84813 7.04961 8.72205 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.039064 B = 0.002392 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.608922 B =11703.631154 C =12346.381465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.087 0.913 9 S -0.135 6.135 10 C -0.109 4.109 11 C 0.495 3.505 12 O -0.513 6.513 13 O -0.351 6.351 14 C 0.179 3.821 15 C -0.141 4.141 16 C -0.111 4.111 17 C 0.189 3.811 18 C -0.147 4.147 19 C -0.070 4.070 20 C -0.151 4.151 21 C 0.091 3.909 22 N -0.508 5.508 23 H 0.272 0.728 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.177 0.823 30 H 0.179 0.821 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.576 -22.921 1.113 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.105 0.895 9 S 0.092 5.908 10 C -0.257 4.257 11 C 0.337 3.663 12 O -0.400 6.400 13 O -0.269 6.269 14 C 0.107 3.893 15 C -0.144 4.144 16 C -0.112 4.112 17 C 0.056 3.944 18 C -0.167 4.167 19 C -0.095 4.095 20 C -0.171 4.171 21 C -0.067 4.067 22 N -0.217 5.217 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.168 0.832 29 H 0.194 0.806 30 H 0.196 0.804 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.133 -23.322 0.752 27.812 hybrid contribution 1.818 1.310 0.283 2.259 sum 16.951 -22.012 1.035 27.802 Atomic orbital electron populations 1.70166 1.07901 1.28724 1.47786 1.26120 0.95997 1.03287 0.93608 0.84883 0.78617 0.76239 0.78078 1.18048 1.19947 1.19917 1.23229 0.95546 0.91544 1.59147 0.89540 1.85527 1.09060 0.99026 1.97172 1.23109 1.04399 0.89660 1.08534 1.22958 0.84665 0.86989 0.71689 1.90686 1.17971 1.85867 1.45504 1.86515 1.40773 1.15131 1.84437 1.19695 0.89359 0.74432 1.05833 1.21539 0.96565 0.97330 0.98945 1.18997 0.93708 0.95500 1.03035 1.16614 0.90242 0.89479 0.98095 1.22306 0.92425 1.02426 0.99561 1.22051 0.99903 0.92175 0.95418 1.22758 0.98625 0.98731 0.96948 1.23357 0.89277 0.98132 0.95967 1.67667 1.36436 1.01377 1.16244 0.91854 0.85746 0.85853 0.86929 0.86704 0.83242 0.80602 0.80361 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.48 13.22 21.65 0.29 -54.19 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 42.71 29.55 68.60 2.03 44.74 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -30.36 9.50 67.96 0.65 -29.71 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.13 -7.20 20.57 -56.49 -1.16 -8.37 16 10 C -0.11 -4.26 6.27 71.23 0.45 -3.81 16 11 C 0.49 18.24 7.97 71.23 0.57 18.81 16 12 O -0.51 -21.83 15.61 21.96 0.34 -21.49 16 13 O -0.35 -10.85 10.18 -51.41 -0.52 -11.38 16 14 C 0.18 4.65 5.94 70.18 0.42 5.07 16 15 C -0.14 -3.77 13.74 31.12 0.43 -3.34 16 16 C -0.11 -2.98 13.44 30.02 0.40 -2.58 16 17 C 0.19 4.40 6.58 40.56 0.27 4.67 16 18 C -0.15 -2.40 9.80 22.61 0.22 -2.18 16 19 C -0.07 -0.67 10.16 22.44 0.23 -0.44 16 20 C -0.15 -1.23 10.11 22.42 0.23 -1.00 16 21 C 0.09 1.23 11.17 84.71 0.95 2.18 16 22 N -0.51 -11.48 10.28 -189.20 -1.95 -13.43 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.12 4.39 8.14 -2.39 -0.02 4.38 16 25 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 26 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 27 H 0.12 2.68 8.13 -2.38 -0.02 2.66 16 28 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 30 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 31 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -74.89 311.83 5.44 -69.44 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.16 Total: 5.71 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.26 Total: -11.05 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.66 Total: -67.62 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.18 Total: -32.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.16 Total: -8.37 kcal Total: -74.89 5.44 -69.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515267104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.746 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds