Wall clock time and date at job start Mon Mar 30 2020 01:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39956 * 120.55651 * 48.44749 * 3 2 1 5 5 C 1.38367 * 118.29116 * 180.02562 * 4 3 2 6 6 C 1.38334 * 119.30826 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.46679 * 179.97438 * 6 5 4 8 8 O 1.45199 * 109.46937 * 0.02562 * 7 6 5 9 9 C 1.34234 * 116.99947 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00090 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99997 * 179.72219 * 9 8 7 12 12 S 1.80998 * 109.47038 * 179.97438 * 11 9 8 13 13 C 1.76208 * 99.99785 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00106 * 0.02562 * 13 12 11 15 15 C 1.38796 * 119.99736 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99774 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00141 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47351 * 90.00092 * 17 15 13 19 19 H 1.48504 * 109.47449 * 209.99909 * 17 15 13 20 20 H 1.48495 * 109.47396 * 329.99894 * 17 15 13 21 21 N 1.31903 * 121.07146 * 0.27565 * 6 5 4 22 22 C 1.31717 * 121.87377 * 359.43246 * 21 6 5 23 23 H 4.53083 * 13.92068 * 0.02562 * 4 2 1 24 24 H 1.08002 * 120.85406 * 0.02562 * 4 3 2 25 25 H 1.08003 * 120.34412 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47315 * 240.00487 * 7 6 5 27 27 H 1.09002 * 109.47266 * 119.99688 * 7 6 5 28 28 H 1.09001 * 109.47201 * 300.00712 * 11 9 8 29 29 H 1.09001 * 109.46880 * 60.00295 * 11 9 8 30 30 H 0.96998 * 119.99494 * 180.02562 * 16 15 13 31 31 H 1.08001 * 119.71962 * 180.27211 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3180 -0.7985 -0.9019 5 6 4.7005 -0.7620 -0.8606 6 6 5.3291 0.0548 0.0621 7 6 6.8347 0.0968 0.1106 8 8 7.3765 -0.7960 -0.8982 9 6 8.7136 -0.8749 -0.9874 10 8 9.4081 -0.2200 -0.2467 11 6 9.3483 -1.7854 -2.0067 12 16 11.1502 -1.6699 -1.8798 13 6 11.6192 -2.8011 -3.1468 14 1 10.8614 -3.3139 -3.7205 15 6 12.9626 -3.0331 -3.4074 16 7 13.3130 -3.8777 -4.3543 17 14 14.2733 -2.1467 -2.4146 18 1 14.6211 -2.9565 -1.2194 19 1 15.4844 -1.9556 -3.2525 20 1 13.7565 -0.8233 -1.9826 21 7 4.6320 0.7929 0.9042 22 6 3.3149 0.7966 0.9001 23 1 -1.0500 -0.0001 -0.0008 24 1 2.8014 -1.4274 -1.6119 25 1 5.2828 -1.3649 -1.5417 26 1 7.1755 -0.2190 1.0966 27 1 7.1762 1.1136 -0.0835 28 1 9.0356 -2.8129 -1.8207 29 1 9.0350 -1.4857 -3.0067 30 1 14.2519 -4.0401 -4.5362 31 1 2.7790 1.4179 1.6024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525380907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:08 Heat of formation + Delta-G solvation = -15.189994 kcal Electronic energy + Delta-G solvation = -17077.007733 eV Core-core repulsion = 14029.817386 eV Total energy + Delta-G solvation = -3047.190347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81642 -41.11585 -37.79428 -35.47807 -34.67819 -33.33979 -32.58327 -31.30025 -28.31298 -27.83791 -24.89114 -23.79079 -22.46162 -20.08408 -19.92783 -18.83601 -18.08429 -17.88693 -17.33655 -17.11765 -16.59986 -16.29501 -15.90949 -15.82900 -14.95381 -14.86005 -14.74566 -14.26246 -13.74108 -13.60993 -13.33560 -13.12854 -13.02134 -12.76180 -12.67355 -11.92911 -11.90531 -11.79236 -11.69596 -11.17365 -10.85336 -10.61534 -10.59351 -9.70959 -9.05199 -8.51581 -6.24810 -0.42461 0.15198 0.72262 1.05176 1.31313 1.32912 1.49782 1.71056 1.76281 1.93600 2.24275 2.62488 2.85045 2.86741 3.00987 3.31123 3.57034 3.75836 3.84578 3.96368 4.10466 4.18035 4.23526 4.38750 4.43989 4.69997 4.75644 4.97723 5.12493 5.24977 5.52638 5.70854 6.13007 6.51093 6.57190 6.74636 6.92695 8.60498 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052437 B = 0.002823 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.843636 B = 9915.283800 C =10428.675456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.203 4.203 3 C -0.045 4.045 4 C -0.052 4.052 5 C -0.150 4.150 6 C 0.116 3.884 7 C 0.120 3.880 8 O -0.343 6.343 9 C 0.495 3.505 10 O -0.514 6.514 11 C -0.088 4.088 12 S -0.165 6.165 13 C -0.529 4.529 14 H 0.067 0.933 15 C 0.046 3.954 16 N -0.914 5.914 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.260 1.260 20 H -0.234 1.234 21 N -0.495 5.495 22 C 0.123 3.877 23 H 0.263 0.737 24 H 0.163 0.837 25 H 0.160 0.840 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.278 0.722 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.811 7.579 8.333 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.204 4.204 3 C -0.047 4.047 4 C -0.077 4.077 5 C -0.170 4.170 6 C -0.020 4.020 7 C 0.045 3.955 8 O -0.259 6.259 9 C 0.337 3.663 10 O -0.402 6.402 11 C -0.236 4.236 12 S 0.062 5.938 13 C -0.677 4.677 14 H 0.086 0.914 15 C -0.160 4.160 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.185 1.185 20 H -0.158 1.158 21 N -0.205 5.205 22 C -0.035 4.035 23 H 0.279 0.721 24 H 0.181 0.819 25 H 0.178 0.822 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.358 8.836 9.752 26.810 hybrid contribution -0.424 -1.209 -1.299 1.824 sum -23.782 7.626 8.453 26.367 Atomic orbital electron populations 1.25853 0.96444 0.95994 0.96019 1.19908 0.91953 1.04249 1.04275 1.17130 0.88905 0.99841 0.98821 1.21996 0.93426 0.95827 0.96455 1.22065 0.95172 0.99854 0.99870 1.20735 0.94475 0.93852 0.92906 1.21420 0.88435 0.94285 0.91359 1.86359 1.22447 1.61685 1.55429 1.22860 0.80336 0.80395 0.82702 1.90690 1.63634 1.43324 1.42520 1.22941 0.97024 1.02647 1.01021 1.84708 1.00531 1.59110 1.49459 1.22406 0.96188 1.28271 1.20826 0.91444 1.25552 1.00045 0.94923 0.95448 1.70013 1.18907 1.34881 1.31399 0.85889 0.79669 0.81471 0.79489 1.18642 1.18456 1.15784 1.67166 1.09091 1.21091 1.23116 1.23199 0.88249 0.95766 0.96319 0.72108 0.81911 0.82250 0.88528 0.88526 0.85208 0.85192 0.91301 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 19.25 74.32 1.43 0.23 16 2 C -0.20 -3.07 13.28 30.01 0.40 -2.67 16 3 C -0.04 -0.79 5.74 -21.31 -0.12 -0.92 16 4 C -0.05 -0.87 9.90 22.72 0.22 -0.64 16 5 C -0.15 -2.91 9.40 22.32 0.21 -2.70 16 6 C 0.12 2.63 6.78 42.57 0.29 2.92 16 7 C 0.12 2.90 6.00 71.23 0.43 3.33 16 8 O -0.34 -9.10 8.65 -51.46 -0.44 -9.54 16 9 C 0.49 16.38 7.98 71.24 0.57 16.94 16 10 O -0.51 -20.11 15.61 21.98 0.34 -19.76 16 11 C -0.09 -3.14 6.27 71.24 0.45 -2.69 16 12 S -0.16 -7.87 18.55 -56.49 -1.05 -8.91 16 13 C -0.53 -29.64 10.04 67.95 0.68 -28.96 16 14 H 0.07 3.98 8.03 -2.91 -0.02 3.95 16 15 C 0.05 2.63 5.50 84.86 0.47 3.09 16 16 N -0.91 -54.40 13.97 21.65 0.30 -54.10 16 17 Si 0.91 43.45 27.74 68.60 1.90 45.36 16 18 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.23 -11.00 6.74 99.48 0.67 -10.33 16 21 N -0.49 -11.26 10.25 -182.85 -1.88 -13.14 16 22 C 0.12 2.27 10.92 85.02 0.93 3.20 16 23 H 0.26 0.06 7.80 -4.42 -0.03 0.03 16 24 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 25 H 0.16 2.83 6.96 -2.91 -0.02 2.81 16 26 H 0.10 2.34 8.13 -2.39 -0.02 2.33 16 27 H 0.10 2.34 8.13 -2.39 -0.02 2.32 16 28 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 29 H 0.13 4.21 8.14 -2.40 -0.02 4.19 16 30 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.39 306.55 6.24 -63.15 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.11 Total: 5.81 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.95 Total: -8.86 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -1.57 Total: -67.24 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.10 Total: -29.30 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.90 Total: 45.36 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.05 Total: -8.91 kcal Total: -69.39 6.24 -63.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525380907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.959 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds