Wall clock time and date at job start Mon Mar 30 2020 01:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48504 * 109.47319 * 270.00141 * 3 2 1 5 5 H 1.48498 * 109.47441 * 30.00477 * 3 2 1 6 6 H 1.48501 * 109.47488 * 150.00511 * 3 2 1 7 7 C 1.38803 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00193 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47310 * 179.97438 * 10 9 7 12 12 O 1.21296 * 119.99851 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00428 * 179.97438 * 11 10 9 14 14 C 1.40115 * 120.00398 * 184.61566 * 13 11 10 15 15 C 1.39334 * 119.94098 * 144.90056 * 14 13 11 16 16 C 1.37722 * 120.62475 * 180.02562 * 15 14 13 17 17 C 1.38956 * 120.05907 * 359.97438 * 16 15 14 18 18 O 1.34919 * 133.31898 * 179.97438 * 17 16 15 19 19 C 1.34434 * 110.89032 * 180.02562 * 18 17 16 20 20 C 1.33998 * 110.15364 * 0.02562 * 19 18 17 21 21 C 1.40461 * 119.43259 * 0.02562 * 17 16 15 22 22 C 1.38324 * 119.93758 * 324.92216 * 14 13 11 23 23 H 0.96995 * 120.00283 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47007 * 60.00110 * 10 9 7 25 25 H 1.09000 * 109.47201 * 299.99974 * 10 9 7 26 26 H 0.96997 * 120.00156 * 4.62324 * 13 11 10 27 27 H 1.07996 * 119.68236 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.97201 * 180.02562 * 16 15 14 29 29 H 1.07994 * 124.92282 * 179.97438 * 19 18 17 30 30 H 1.07994 * 126.89858 * 179.97438 * 20 19 18 31 31 H 1.08001 * 120.22531 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0003 14 6 2.3560 -7.6527 -0.0974 15 6 3.0802 -8.6147 -0.7984 16 6 2.6131 -9.9061 -0.9031 17 6 1.4095 -10.2615 -0.3065 18 8 0.7150 -11.4163 -0.2396 19 6 -0.4177 -11.2542 0.4661 20 6 -0.5183 -9.9882 0.8932 21 6 0.6775 -9.2936 0.4008 22 6 1.1556 -7.9881 0.5026 23 1 -0.4850 0.8400 0.0004 24 1 3.1245 -3.7312 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 3.7990 -6.1852 0.0667 27 1 4.0161 -8.3449 -1.2647 28 1 3.1833 -10.6435 -1.4487 29 1 -1.1419 -12.0315 0.6599 30 1 -1.3185 -9.5640 1.4815 31 1 0.5929 -7.2438 1.0464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535414128.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:49 Heat of formation + Delta-G solvation = -25.651762 kcal Electronic energy + Delta-G solvation = -17642.580829 eV Core-core repulsion = 14594.936826 eV Total energy + Delta-G solvation = -3047.644004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.34768 -41.29842 -38.64447 -35.51369 -34.59164 -33.71801 -31.73069 -30.36833 -29.32678 -27.66172 -24.68707 -23.26770 -22.31013 -21.78600 -19.95729 -18.96120 -18.59274 -17.73644 -17.28103 -17.01791 -16.88380 -16.51977 -16.11774 -15.34728 -15.06169 -14.89302 -14.51809 -14.08918 -14.02384 -13.69548 -13.59521 -13.30671 -13.17626 -12.89289 -12.62396 -12.23221 -11.75335 -11.35261 -11.15725 -11.14019 -10.88836 -10.29848 -9.24411 -9.02310 -8.68070 -8.35452 -6.13945 -0.05723 0.18902 1.22661 1.42563 1.43076 1.44601 1.51264 1.56378 1.87545 2.13196 2.26273 2.68957 2.99163 3.26741 3.52262 3.73816 3.88461 4.05242 4.26028 4.27608 4.30543 4.41089 4.47751 4.65354 4.85149 5.00051 5.22700 5.26501 5.27375 5.41783 5.46450 5.71386 6.17598 6.19310 6.35301 7.06027 7.08581 8.73751 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.048263 B = 0.003236 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.019980 B = 8651.634024 C = 9139.867088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.086 0.914 9 S -0.151 6.151 10 C -0.127 4.127 11 C 0.532 3.468 12 O -0.544 6.544 13 N -0.653 5.653 14 C 0.121 3.879 15 C -0.106 4.106 16 C -0.082 4.082 17 C 0.015 3.985 18 O -0.202 6.202 19 C 0.027 3.973 20 C -0.242 4.242 21 C -0.140 4.140 22 C -0.107 4.107 23 H 0.271 0.729 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.432 0.568 27 H 0.178 0.822 28 H 0.171 0.829 29 H 0.256 0.744 30 H 0.165 0.835 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -21.656 -0.190 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.077 5.923 10 C -0.278 4.278 11 C 0.320 3.680 12 O -0.420 6.420 13 N -0.301 5.301 14 C 0.027 3.973 15 C -0.126 4.126 16 C -0.100 4.100 17 C -0.032 4.032 18 O -0.103 6.103 19 C -0.037 4.037 20 C -0.261 4.261 21 C -0.141 4.141 22 C -0.128 4.128 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.136 0.864 26 H 0.271 0.729 27 H 0.195 0.805 28 H 0.188 0.812 29 H 0.271 0.729 30 H 0.183 0.817 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.519 -22.063 -0.320 23.008 hybrid contribution 1.401 1.735 0.334 2.255 sum 7.920 -20.327 0.014 21.816 Atomic orbital electron populations 1.70179 1.08019 1.28639 1.48002 1.26138 0.95953 1.03376 0.93724 0.84940 0.78224 0.75954 0.78785 1.19325 1.20449 1.18053 1.23212 0.95449 0.91815 1.58877 0.89618 1.85638 1.10306 0.99308 1.97092 1.23351 1.03827 0.93099 1.07532 1.20349 0.86237 0.86774 0.74644 1.90712 1.17373 1.85637 1.48265 1.43233 1.11387 1.02600 1.72901 1.17762 0.95619 0.84842 0.99066 1.21022 1.02042 0.90955 0.98575 1.20091 0.92230 0.97029 1.00687 1.19980 0.96377 0.84067 1.02775 1.84010 1.31162 1.32820 1.62340 1.24784 0.87399 0.98702 0.92785 1.22842 0.99798 0.94934 1.08565 1.20149 0.97406 0.94294 1.02277 1.20598 0.97158 0.94599 1.00463 0.92000 0.86479 0.86379 0.72860 0.80468 0.81199 0.72872 0.81742 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -30.66 9.50 67.96 0.65 -30.02 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 10 C -0.13 -4.83 6.16 71.23 0.44 -4.39 16 11 C 0.53 19.47 7.69 87.66 0.67 20.14 16 12 O -0.54 -25.14 13.30 -3.08 -0.04 -25.18 16 13 N -0.65 -16.91 5.34 -303.42 -1.62 -18.53 16 14 C 0.12 3.29 6.30 38.10 0.24 3.53 16 15 C -0.11 -2.03 9.93 22.41 0.22 -1.81 16 16 C -0.08 -1.56 10.05 22.32 0.22 -1.33 16 17 C 0.02 0.38 7.41 22.98 0.17 0.55 16 18 O -0.20 -4.40 10.59 -9.91 -0.10 -4.50 16 19 C 0.03 0.47 11.96 66.85 0.80 1.27 16 20 C -0.24 -5.70 11.14 23.54 0.26 -5.43 16 21 C -0.14 -4.08 6.39 -20.22 -0.13 -4.20 16 22 C -0.11 -3.52 8.74 22.57 0.20 -3.32 16 23 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 24 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 25 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 26 H 0.43 7.19 8.82 -92.71 -0.82 6.37 16 27 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 28 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.26 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.11 4.43 6.22 -2.91 -0.02 4.41 16 Total: -1.00 -80.52 294.33 3.95 -76.56 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.36 Total: 15.23 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.21 Total: -23.83 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.33 Total: -74.02 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.15 Total: -29.68 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -80.52 3.95 -76.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535414128.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.911 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds