Wall clock time and date at job start Mon Mar 30 2020 01:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99790 * 2 1 4 4 H 1.48504 * 109.47000 * 94.96251 * 3 2 1 5 5 H 1.48501 * 109.47630 * 214.96289 * 3 2 1 6 6 H 1.48506 * 109.47226 * 334.96313 * 3 2 1 7 7 C 1.40047 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00062 * 9.77188 * 7 2 1 9 9 C 1.46378 * 119.99988 * 189.77501 * 7 2 1 10 10 O 1.21687 * 119.99660 * 9.08171 * 9 7 2 11 11 N 1.34770 * 120.00019 * 189.08502 * 9 7 2 12 12 C 1.46387 * 119.69915 * 296.49713 * 11 9 7 13 13 C 1.53662 * 109.24928 * 115.72285 * 12 11 9 14 14 S 1.81672 * 108.90405 * 58.42383 * 13 12 11 15 15 O 1.42097 * 108.64955 * 189.98195 * 14 13 12 16 16 O 1.42100 * 108.65034 * 58.68122 * 14 13 12 17 17 C 1.81663 * 101.38659 * 304.33031 * 14 13 12 18 18 C 1.46393 * 119.69923 * 116.77136 * 11 9 7 19 19 H 1.09003 * 109.46169 * 124.26278 * 18 11 9 20 20 C 1.50699 * 109.46429 * 4.27893 * 18 11 9 21 21 O 1.20828 * 119.99784 * 313.71892 * 20 18 11 22 22 O 1.34227 * 119.99706 * 133.71652 * 20 18 11 23 23 H 0.96999 * 119.99908 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46256 * 235.73751 * 12 11 9 25 25 H 1.08994 * 109.46883 * 355.71641 * 12 11 9 26 26 H 1.08996 * 109.66710 * 298.54639 * 13 12 11 27 27 H 1.09002 * 109.49506 * 178.19596 * 13 12 11 28 28 H 1.08999 * 109.55920 * 295.72054 * 17 14 13 29 29 H 1.09005 * 109.64813 * 175.45799 * 17 14 13 30 30 H 0.96705 * 116.99806 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5930 1.9859 1.3949 5 1 3.4819 1.4729 -0.8023 6 1 1.3895 2.6807 -0.5925 7 6 2.0070 -1.2128 -0.0005 8 1 1.4788 -2.1413 -0.1597 9 6 3.4548 -1.2221 0.2147 10 8 4.0256 -0.2033 0.5569 11 7 4.1557 -2.3589 0.0338 12 6 3.8912 -3.5177 0.8882 13 6 3.3409 -4.6661 0.0282 14 16 4.5535 -5.0673 -1.2637 15 8 3.9512 -5.9598 -2.1909 16 8 5.7776 -5.4315 -0.6407 17 6 4.7686 -3.4524 -2.0676 18 6 5.1788 -2.4216 -1.0114 19 1 6.1317 -2.7136 -0.5698 20 6 5.3191 -1.0680 -1.6587 21 8 4.3338 -0.4505 -1.9871 22 8 6.5385 -0.5485 -1.8704 23 1 -0.4850 0.8400 -0.0004 24 1 4.8170 -3.8327 1.3698 25 1 3.1593 -3.2482 1.6496 26 1 2.4024 -4.3608 -0.4344 27 1 3.1727 -5.5417 0.6552 28 1 3.8300 -3.1472 -2.5301 29 1 5.5449 -3.5228 -2.8296 30 1 6.5780 0.3224 -2.2889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:24 Heat of formation + Delta-G solvation = -208.864167 kcal Electronic energy + Delta-G solvation = -20995.938057 eV Core-core repulsion = 17497.207353 eV Total energy + Delta-G solvation = -3498.730704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.054 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81822 -39.80198 -38.17864 -37.25432 -37.11647 -36.98681 -35.06004 -33.42643 -31.15940 -28.77465 -26.66736 -24.54308 -23.31831 -21.03974 -19.80202 -19.37185 -19.00875 -18.19269 -17.74505 -17.43265 -17.13292 -16.79801 -16.69988 -16.31630 -15.79101 -15.49414 -14.64413 -14.45913 -14.38931 -14.24182 -13.95361 -13.57259 -13.36781 -13.26544 -13.13539 -13.03149 -12.81340 -12.45862 -12.41833 -12.21637 -11.75954 -11.54331 -11.23892 -11.15266 -10.07330 -9.33987 -8.88860 -7.09288 -0.98367 1.01882 1.24109 1.35989 1.56290 1.62018 1.84895 1.97189 2.29935 2.50504 2.64705 2.96268 3.12607 3.37071 3.68779 3.89561 4.06337 4.18525 4.25179 4.38642 4.65444 4.77475 4.96210 5.09214 5.58669 5.64648 6.01080 6.12328 6.49160 6.89770 6.96015 7.79955 8.14027 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.008380 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.740319 B = 3340.671873 C = 3983.683948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.071 3.929 3 Si 0.998 3.002 4 H -0.295 1.295 5 H -0.259 1.259 6 H -0.314 1.314 7 C -0.516 4.516 8 H 0.083 0.917 9 C 0.574 3.426 10 O -0.614 6.614 11 N -0.693 5.693 12 C 0.148 3.852 13 C -0.611 4.611 14 S 2.459 3.541 15 O -0.968 6.968 16 O -0.952 6.952 17 C -0.623 4.623 18 C 0.190 3.810 19 H 0.136 0.864 20 C 0.477 3.523 21 O -0.510 6.510 22 O -0.506 6.506 23 H 0.292 0.708 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.177 0.823 28 H 0.143 0.857 29 H 0.174 0.826 30 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -8.040 -2.297 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.147 4.147 3 Si 0.831 3.169 4 H -0.223 1.223 5 H -0.185 1.185 6 H -0.245 1.245 7 C -0.551 4.551 8 H 0.102 0.898 9 C 0.389 3.611 10 O -0.506 6.506 11 N -0.436 5.436 12 C 0.025 3.975 13 C -0.744 4.744 14 S 2.642 3.358 15 O -0.965 6.965 16 O -0.949 6.949 17 C -0.752 4.752 18 C 0.084 3.916 19 H 0.154 0.846 20 C 0.317 3.683 21 O -0.397 6.397 22 O -0.319 6.319 23 H 0.102 0.898 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.158 0.842 27 H 0.194 0.806 28 H 0.161 0.839 29 H 0.191 0.809 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.485 -8.504 -2.255 12.938 hybrid contribution -0.653 2.202 -0.278 2.314 sum 8.832 -6.302 -2.533 11.142 Atomic orbital electron populations 1.69577 1.08465 1.31261 1.37157 1.26329 0.95168 1.04133 0.89043 0.84751 0.77867 0.75951 0.78302 1.22267 1.18455 1.24476 1.21380 0.91793 0.95326 1.46597 0.89846 1.17864 0.87488 0.80816 0.74892 1.90154 1.73028 1.35420 1.52018 1.46985 1.42151 1.15140 1.39288 1.21221 1.02757 0.81841 0.91641 1.30653 1.16930 1.09629 1.17171 1.06773 0.76311 0.75809 0.76886 1.93559 1.78763 1.60961 1.63232 1.93553 1.43596 1.81297 1.76447 1.30775 1.13752 1.19778 1.10912 1.19822 0.94915 0.88949 0.87946 0.84637 1.23177 0.81029 0.88109 0.76013 1.90844 1.40093 1.61188 1.47550 1.84399 1.31426 1.40542 1.75518 0.89786 0.87291 0.88221 0.84201 0.80586 0.83915 0.80869 0.71343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.81 13.92 21.84 0.30 -45.51 16 2 C 0.07 3.93 5.52 85.30 0.47 4.40 16 3 Si 1.00 51.76 25.74 68.60 1.77 53.53 16 4 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 5 H -0.26 -14.14 5.32 99.48 0.53 -13.61 16 6 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 7 C -0.52 -27.35 9.95 24.83 0.25 -27.10 16 8 H 0.08 4.36 8.06 -2.91 -0.02 4.33 16 9 C 0.57 27.75 3.86 86.36 0.33 28.09 16 10 O -0.61 -33.15 11.34 15.41 0.17 -32.97 16 11 N -0.69 -25.24 2.72 -805.99 -2.20 -27.44 16 12 C 0.15 4.01 6.12 86.62 0.53 4.54 16 13 C -0.61 -13.10 6.57 72.20 0.47 -12.63 16 14 S 2.46 55.89 5.29 -56.49 -0.30 55.59 16 15 O -0.97 -27.67 18.10 -127.39 -2.31 -29.98 16 16 O -0.95 -24.59 18.02 -127.39 -2.30 -26.88 16 17 C -0.62 -14.94 5.81 72.04 0.42 -14.52 16 18 C 0.19 5.84 3.16 44.33 0.14 5.98 16 19 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 20 C 0.48 17.23 6.06 71.24 0.43 17.66 16 21 O -0.51 -23.17 13.78 28.57 0.39 -22.78 16 22 O -0.51 -14.18 13.42 -51.39 -0.69 -14.87 16 23 H 0.29 14.80 8.29 -92.71 -0.77 14.03 16 24 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.10 2.87 7.85 -2.39 -0.02 2.85 16 26 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 27 H 0.18 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 29 H 0.17 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.43 8.75 9.10 -74.05 -0.67 8.07 16 Total: -1.00 -79.17 271.07 -1.76 -80.93 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 0.34 Total: 3.95 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 3.04 Total: 6.43 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.89 Total: -72.94 kcal Atomic # 8 Polarization: -122.76 SS G_CDS: -4.72 Total: -127.49 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.77 Total: 53.53 kcal Atomic # 16 Polarization: 55.89 SS G_CDS: -0.30 Total: 55.59 kcal Total: -79.17 -1.76 -80.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.933 kcal (2) G-P(sol) polarization free energy of solvation -79.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds