Wall clock time and date at job start Mon Mar 30 2020 01:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13592 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.39351 * 120.21222 * 260.27467 * 3 2 1
5 5 C 1.50701 * 120.00603 * 359.97438 * 4 3 2
6 6 S 1.81401 * 109.47346 * 89.99309 * 5 4 3
7 7 C 1.81398 * 102.99726 * 180.02562 * 6 5 4
8 8 C 1.50709 * 109.46986 * 180.02562 * 7 6 5
9 9 H 1.07999 * 119.99448 * 0.02562 * 8 7 6
10 10 C 1.37872 * 119.99852 * 180.02562 * 8 7 6
11 11 N 1.31511 * 120.00287 * 0.02562 * 10 8 7
12 12 Si 1.86800 * 119.99762 * 180.02562 * 10 8 7
13 13 H 1.48501 * 109.47148 * 90.00055 * 12 10 8
14 14 H 1.48503 * 109.47318 * 210.00201 * 12 10 8
15 15 H 1.48499 * 109.47182 * 329.99871 * 12 10 8
16 16 C 1.38123 * 119.98862 * 179.69322 * 4 3 2
17 17 C 1.38439 * 120.43706 * 0.61420 * 16 4 3
18 18 C 1.38116 * 120.43558 * 359.66866 * 17 16 4
19 19 C 1.39355 * 119.99125 * 0.02562 * 18 17 16
20 20 C 1.47688 * 120.21363 * 179.97438 * 19 18 17
21 21 O 1.21469 * 120.00283 * 180.02562 * 20 19 18
22 22 O 1.34729 * 119.99914 * 0.03115 * 20 19 18
23 23 H 1.08991 * 109.47152 * 210.00059 * 5 4 3
24 24 H 1.09002 * 109.46831 * 329.99327 * 5 4 3
25 25 H 1.08999 * 109.47513 * 300.00145 * 7 6 5
26 26 H 1.09004 * 109.47100 * 60.00420 * 7 6 5
27 27 H 0.97001 * 120.00357 * 180.02562 * 11 10 8
28 28 H 1.08005 * 119.78121 * 180.30227 * 16 4 3
29 29 H 1.08006 * 119.78219 * 179.68807 * 17 16 4
30 30 H 1.07999 * 119.99783 * 180.02562 * 18 17 16
31 31 H 0.96702 * 117.00284 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2691 0.2044 1.1869
5 6 2.5205 0.4256 2.4760
6 16 2.2200 -1.1713 3.2825
7 6 1.3239 -0.7052 4.7892
8 6 0.9968 -1.9440 5.5827
9 1 1.2982 -2.9145 5.2172
10 6 0.3127 -1.8383 6.7751
11 7 -0.0547 -0.6565 7.2198
12 14 -0.0921 -3.3737 7.7589
13 1 1.0152 -3.6612 8.7057
14 1 -1.3496 -3.1576 8.5186
15 1 -0.2638 -4.5231 6.8343
16 6 4.6503 0.1978 1.1827
17 6 5.3471 0.0023 0.0025
18 6 4.6702 -0.1956 -1.1851
19 6 3.2768 -0.1987 -1.2005
20 6 2.5480 -0.4092 -2.4677
21 8 1.3334 -0.4107 -2.4768
22 8 3.2305 -0.5996 -3.6136
23 1 3.1123 1.0601 3.1355
24 1 1.5676 0.9106 2.2641
25 1 1.9454 -0.0422 5.3912
26 1 0.4009 -0.1921 4.5190
27 1 -0.5357 -0.5820 8.0589
28 1 5.1903 0.3512 2.1054
29 1 6.4271 0.0041 0.0106
30 1 5.2209 -0.3478 -2.1015
31 1 2.7100 -0.7336 -4.4175
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001610622198.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:01
Heat of formation + Delta-G solvation = -43.856526 kcal
Electronic energy + Delta-G solvation = -17651.811991 eV
Core-core repulsion = 14603.378570 eV
Total energy + Delta-G solvation = -3048.433421 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 277.056 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.84486 -39.23442 -36.58103 -35.93870 -33.24553 -33.16280 -31.78223 -28.61571
-27.51596 -25.39168 -23.32668 -22.82047 -21.35454 -18.90938 -18.22515 -17.21379
-16.50236 -15.97778 -15.94487 -15.46237 -15.27546 -14.71555 -14.37795 -13.85577
-13.43151 -13.15395 -13.02340 -12.78601 -12.62801 -12.41847 -12.23211 -12.15459
-11.89003 -11.82872 -11.56341 -10.88926 -10.78702 -10.70550 -10.26597 -9.64748
-9.33522 -9.06475 -8.82422 -8.63545 -6.79576 -6.21509 -4.26166 0.16843
0.66564 2.16801 2.57597 2.64465 2.96530 3.04593 3.25514 3.31335
3.36910 3.71304 3.80533 3.89797 4.33918 4.36622 4.57612 4.63106
4.92783 4.97025 5.15874 5.28109 5.36313 5.48860 5.76346 5.80263
5.99639 6.11059 6.15790 6.37818 7.03719 7.07090 7.57522 7.72547
7.74072 7.97194 8.75404 9.37228 10.89754
Molecular weight = 277.06amu
Principal moments of inertia in cm(-1)
A = 0.028466 B = 0.003907 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 983.397751 B = 7165.418099 C = 7632.517023
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.377 5.377
2 C 0.245 3.755
3 C 0.053 3.947
4 C -0.020 4.020
5 C -0.069 4.069
6 S -0.285 6.285
7 C 0.090 3.910
8 C -0.513 4.513
9 H 0.068 0.932
10 C 0.066 3.934
11 N -0.892 5.892
12 Si 0.907 3.093
13 H -0.277 1.277
14 H -0.284 1.284
15 H -0.271 1.271
16 C -0.066 4.066
17 C -0.107 4.107
18 C -0.064 4.064
19 C -0.092 4.092
20 C 0.522 3.478
21 O -0.497 6.497
22 O -0.510 6.510
23 H 0.097 0.903
24 H 0.085 0.915
25 H 0.038 0.962
26 H 0.036 0.964
27 H 0.266 0.734
28 H 0.145 0.855
29 H 0.142 0.858
30 H 0.147 0.853
31 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.936 3.793 -17.723 22.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.053 5.053
2 C -0.071 4.071
3 C 0.048 3.952
4 C -0.023 4.023
5 C -0.216 4.216
6 S -0.056 6.056
7 C -0.057 4.057
8 C -0.553 4.553
9 H 0.086 0.914
10 C -0.138 4.138
11 N -0.530 5.530
12 Si 0.734 3.266
13 H -0.203 1.203
14 H -0.209 1.209
15 H -0.195 1.195
16 C -0.086 4.086
17 C -0.125 4.125
18 C -0.083 4.083
19 C -0.095 4.095
20 C 0.365 3.635
21 O -0.385 6.385
22 O -0.322 6.322
23 H 0.115 0.885
24 H 0.103 0.897
25 H 0.057 0.943
26 H 0.055 0.945
27 H 0.076 0.924
28 H 0.163 0.837
29 H 0.159 0.841
30 H 0.165 0.835
31 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges 12.225 2.942 -17.537 21.579
hybrid contribution -0.588 0.361 0.497 0.850
sum 11.638 3.303 -17.040 20.897
Atomic orbital electron populations
1.81132 1.11793 1.05327 1.07038 1.25007 0.92264 0.95780 0.94056
1.15720 0.85217 1.01653 0.92628 1.19441 0.93781 0.96941 0.92171
1.22328 1.02532 1.01292 0.95481 1.86893 1.77223 1.10735 1.30754
1.21115 0.96062 1.00408 0.88113 1.20648 1.37405 0.92198 1.05026
0.91429 1.24955 0.95053 0.96752 0.97017 1.69947 1.38699 1.22905
1.21469 0.86340 0.77913 0.82525 0.79835 1.20282 1.20938 1.19519
1.21352 0.92481 0.95418 0.99344 1.21358 1.00939 0.98541 0.91689
1.21390 0.91745 0.95665 0.99514 1.18866 0.93835 1.07697 0.89137
1.20768 0.85528 0.73054 0.84101 1.90987 1.14838 1.46168 1.86498
1.84517 1.44878 1.84092 1.18707 0.88454 0.89688 0.94348 0.94529
0.92437 0.83676 0.84052 0.83497 0.72469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.38 -7.64 18.41 41.83 0.77 -6.87 16
2 C 0.24 4.34 11.22 -22.47 -0.25 4.09 16
3 C 0.05 0.75 5.76 -106.58 -0.61 0.13 16
4 C -0.02 -0.26 5.17 -104.25 -0.54 -0.80 16
5 C -0.07 -1.11 5.66 36.01 0.20 -0.91 16
6 S -0.28 -6.05 21.64 -107.50 -2.33 -8.38 16
7 C 0.09 2.32 5.70 36.01 0.21 2.53 16
8 C -0.51 -14.53 9.13 -34.44 -0.31 -14.84 16
9 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16
10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16
11 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16
12 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16
13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
16 C -0.07 -0.63 9.68 -39.55 -0.38 -1.01 16
17 C -0.11 -0.76 10.02 -39.55 -0.40 -1.16 16
18 C -0.06 -0.51 9.61 -39.21 -0.38 -0.88 16
19 C -0.09 -1.04 5.90 -104.64 -0.62 -1.66 16
20 C 0.52 6.04 8.25 34.59 0.29 6.33 16
21 O -0.50 -7.74 15.12 -19.24 -0.29 -8.03 16
22 O -0.51 -3.72 12.68 -40.57 -0.51 -4.24 16
23 H 0.10 1.36 8.09 -51.93 -0.42 0.94 16
24 H 0.08 1.45 7.08 -51.92 -0.37 1.09 16
25 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16
26 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16
27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16
28 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16
29 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16
30 H 0.15 0.78 7.61 -52.49 -0.40 0.38 16
31 H 0.42 1.30 9.11 45.56 0.42 1.72 16
LS Contribution 303.86 15.07 4.58 4.58
Total: -1.00 -34.78 303.86 -6.97 -41.75
By element:
Atomic # 1 Polarization: -1.60 SS G_CDS: -2.00 Total: -3.60 kcal
Atomic # 6 Polarization: -3.51 SS G_CDS: -2.90 Total: -6.41 kcal
Atomic # 7 Polarization: -33.68 SS G_CDS: 1.51 Total: -32.17 kcal
Atomic # 8 Polarization: -11.46 SS G_CDS: -0.81 Total: -12.27 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Atomic # 16 Polarization: -6.05 SS G_CDS: -2.33 Total: -8.38 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -34.78 -6.97 -41.75 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610622198.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.108 kcal
(2) G-P(sol) polarization free energy of solvation -34.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds