Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39351 * 120.21222 * 260.27467 * 3 2 1 5 5 C 1.50701 * 120.00603 * 359.97438 * 4 3 2 6 6 S 1.81401 * 109.47346 * 89.99309 * 5 4 3 7 7 C 1.81398 * 102.99726 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.46986 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99448 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99852 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00287 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99762 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47148 * 90.00055 * 12 10 8 14 14 H 1.48503 * 109.47318 * 210.00201 * 12 10 8 15 15 H 1.48499 * 109.47182 * 329.99871 * 12 10 8 16 16 C 1.38123 * 119.98862 * 179.69322 * 4 3 2 17 17 C 1.38439 * 120.43706 * 0.61420 * 16 4 3 18 18 C 1.38116 * 120.43558 * 359.66866 * 17 16 4 19 19 C 1.39355 * 119.99125 * 0.02562 * 18 17 16 20 20 C 1.47688 * 120.21363 * 179.97438 * 19 18 17 21 21 O 1.21469 * 120.00283 * 180.02562 * 20 19 18 22 22 O 1.34729 * 119.99914 * 0.03115 * 20 19 18 23 23 H 1.08991 * 109.47152 * 210.00059 * 5 4 3 24 24 H 1.09002 * 109.46831 * 329.99327 * 5 4 3 25 25 H 1.08999 * 109.47513 * 300.00145 * 7 6 5 26 26 H 1.09004 * 109.47100 * 60.00420 * 7 6 5 27 27 H 0.97001 * 120.00357 * 180.02562 * 11 10 8 28 28 H 1.08005 * 119.78121 * 180.30227 * 16 4 3 29 29 H 1.08006 * 119.78219 * 179.68807 * 17 16 4 30 30 H 1.07999 * 119.99783 * 180.02562 * 18 17 16 31 31 H 0.96702 * 117.00284 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2044 1.1869 5 6 2.5205 0.4256 2.4760 6 16 2.2200 -1.1713 3.2825 7 6 1.3239 -0.7052 4.7892 8 6 0.9968 -1.9440 5.5827 9 1 1.2982 -2.9145 5.2172 10 6 0.3127 -1.8383 6.7751 11 7 -0.0547 -0.6565 7.2198 12 14 -0.0921 -3.3737 7.7589 13 1 1.0152 -3.6612 8.7057 14 1 -1.3496 -3.1576 8.5186 15 1 -0.2638 -4.5231 6.8343 16 6 4.6503 0.1978 1.1827 17 6 5.3471 0.0023 0.0025 18 6 4.6702 -0.1956 -1.1851 19 6 3.2768 -0.1987 -1.2005 20 6 2.5480 -0.4092 -2.4677 21 8 1.3334 -0.4107 -2.4768 22 8 3.2305 -0.5996 -3.6136 23 1 3.1123 1.0601 3.1355 24 1 1.5676 0.9106 2.2641 25 1 1.9454 -0.0422 5.3912 26 1 0.4009 -0.1921 4.5190 27 1 -0.5357 -0.5820 8.0589 28 1 5.1903 0.3512 2.1054 29 1 6.4271 0.0041 0.0106 30 1 5.2209 -0.3478 -2.1015 31 1 2.7100 -0.7336 -4.4175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -43.856526 kcal Electronic energy + Delta-G solvation = -17651.811991 eV Core-core repulsion = 14603.378570 eV Total energy + Delta-G solvation = -3048.433421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84486 -39.23442 -36.58103 -35.93870 -33.24553 -33.16280 -31.78223 -28.61571 -27.51596 -25.39168 -23.32668 -22.82047 -21.35454 -18.90938 -18.22515 -17.21379 -16.50236 -15.97778 -15.94487 -15.46237 -15.27546 -14.71555 -14.37795 -13.85577 -13.43151 -13.15395 -13.02340 -12.78601 -12.62801 -12.41847 -12.23211 -12.15459 -11.89003 -11.82872 -11.56341 -10.88926 -10.78702 -10.70550 -10.26597 -9.64748 -9.33522 -9.06475 -8.82422 -8.63545 -6.79576 -6.21509 -4.26166 0.16843 0.66564 2.16801 2.57597 2.64465 2.96530 3.04593 3.25514 3.31335 3.36910 3.71304 3.80533 3.89797 4.33918 4.36622 4.57612 4.63106 4.92783 4.97025 5.15874 5.28109 5.36313 5.48860 5.76346 5.80263 5.99639 6.11059 6.15790 6.37818 7.03719 7.07090 7.57522 7.72547 7.74072 7.97194 8.75404 9.37228 10.89754 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.003907 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.397751 B = 7165.418099 C = 7632.517023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C 0.245 3.755 3 C 0.053 3.947 4 C -0.020 4.020 5 C -0.069 4.069 6 S -0.285 6.285 7 C 0.090 3.910 8 C -0.513 4.513 9 H 0.068 0.932 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.907 3.093 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.271 1.271 16 C -0.066 4.066 17 C -0.107 4.107 18 C -0.064 4.064 19 C -0.092 4.092 20 C 0.522 3.478 21 O -0.497 6.497 22 O -0.510 6.510 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.936 3.793 -17.723 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.071 4.071 3 C 0.048 3.952 4 C -0.023 4.023 5 C -0.216 4.216 6 S -0.056 6.056 7 C -0.057 4.057 8 C -0.553 4.553 9 H 0.086 0.914 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.734 3.266 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.195 1.195 16 C -0.086 4.086 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.095 4.095 20 C 0.365 3.635 21 O -0.385 6.385 22 O -0.322 6.322 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 12.225 2.942 -17.537 21.579 hybrid contribution -0.588 0.361 0.497 0.850 sum 11.638 3.303 -17.040 20.897 Atomic orbital electron populations 1.81132 1.11793 1.05327 1.07038 1.25007 0.92264 0.95780 0.94056 1.15720 0.85217 1.01653 0.92628 1.19441 0.93781 0.96941 0.92171 1.22328 1.02532 1.01292 0.95481 1.86893 1.77223 1.10735 1.30754 1.21115 0.96062 1.00408 0.88113 1.20648 1.37405 0.92198 1.05026 0.91429 1.24955 0.95053 0.96752 0.97017 1.69947 1.38699 1.22905 1.21469 0.86340 0.77913 0.82525 0.79835 1.20282 1.20938 1.19519 1.21352 0.92481 0.95418 0.99344 1.21358 1.00939 0.98541 0.91689 1.21390 0.91745 0.95665 0.99514 1.18866 0.93835 1.07697 0.89137 1.20768 0.85528 0.73054 0.84101 1.90987 1.14838 1.46168 1.86498 1.84517 1.44878 1.84092 1.18707 0.88454 0.89688 0.94348 0.94529 0.92437 0.83676 0.84052 0.83497 0.72469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -7.64 18.41 41.83 0.77 -6.87 16 2 C 0.24 4.34 11.22 -22.47 -0.25 4.09 16 3 C 0.05 0.75 5.76 -106.58 -0.61 0.13 16 4 C -0.02 -0.26 5.17 -104.25 -0.54 -0.80 16 5 C -0.07 -1.11 5.66 36.01 0.20 -0.91 16 6 S -0.28 -6.05 21.64 -107.50 -2.33 -8.38 16 7 C 0.09 2.32 5.70 36.01 0.21 2.53 16 8 C -0.51 -14.53 9.13 -34.44 -0.31 -14.84 16 9 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 11 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 12 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 C -0.07 -0.63 9.68 -39.55 -0.38 -1.01 16 17 C -0.11 -0.76 10.02 -39.55 -0.40 -1.16 16 18 C -0.06 -0.51 9.61 -39.21 -0.38 -0.88 16 19 C -0.09 -1.04 5.90 -104.64 -0.62 -1.66 16 20 C 0.52 6.04 8.25 34.59 0.29 6.33 16 21 O -0.50 -7.74 15.12 -19.24 -0.29 -8.03 16 22 O -0.51 -3.72 12.68 -40.57 -0.51 -4.24 16 23 H 0.10 1.36 8.09 -51.93 -0.42 0.94 16 24 H 0.08 1.45 7.08 -51.92 -0.37 1.09 16 25 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 26 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 30 H 0.15 0.78 7.61 -52.49 -0.40 0.38 16 31 H 0.42 1.30 9.11 45.56 0.42 1.72 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -34.78 303.86 -6.97 -41.75 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -2.00 Total: -3.60 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.90 Total: -6.41 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 1.51 Total: -32.17 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.81 Total: -12.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -2.33 Total: -8.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.78 -6.97 -41.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.108 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds