Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39351 * 120.21222 * 260.27467 * 3 2 1 5 5 C 1.50701 * 120.00603 * 359.97438 * 4 3 2 6 6 S 1.81401 * 109.47346 * 89.99309 * 5 4 3 7 7 C 1.81398 * 102.99726 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.46986 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99448 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99852 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00287 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99762 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47148 * 90.00055 * 12 10 8 14 14 H 1.48503 * 109.47318 * 210.00201 * 12 10 8 15 15 H 1.48499 * 109.47182 * 329.99871 * 12 10 8 16 16 C 1.38123 * 119.98862 * 179.69322 * 4 3 2 17 17 C 1.38439 * 120.43706 * 0.61420 * 16 4 3 18 18 C 1.38116 * 120.43558 * 359.66866 * 17 16 4 19 19 C 1.39355 * 119.99125 * 0.02562 * 18 17 16 20 20 C 1.47688 * 120.21363 * 179.97438 * 19 18 17 21 21 O 1.21469 * 120.00283 * 180.02562 * 20 19 18 22 22 O 1.34729 * 119.99914 * 0.03115 * 20 19 18 23 23 H 1.08991 * 109.47152 * 210.00059 * 5 4 3 24 24 H 1.09002 * 109.46831 * 329.99327 * 5 4 3 25 25 H 1.08999 * 109.47513 * 300.00145 * 7 6 5 26 26 H 1.09004 * 109.47100 * 60.00420 * 7 6 5 27 27 H 0.97001 * 120.00357 * 180.02562 * 11 10 8 28 28 H 1.08005 * 119.78121 * 180.30227 * 16 4 3 29 29 H 1.08006 * 119.78219 * 179.68807 * 17 16 4 30 30 H 1.07999 * 119.99783 * 180.02562 * 18 17 16 31 31 H 0.96702 * 117.00284 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2044 1.1869 5 6 2.5205 0.4256 2.4760 6 16 2.2200 -1.1713 3.2825 7 6 1.3239 -0.7052 4.7892 8 6 0.9968 -1.9440 5.5827 9 1 1.2982 -2.9145 5.2172 10 6 0.3127 -1.8383 6.7751 11 7 -0.0547 -0.6565 7.2198 12 14 -0.0921 -3.3737 7.7589 13 1 1.0152 -3.6612 8.7057 14 1 -1.3496 -3.1576 8.5186 15 1 -0.2638 -4.5231 6.8343 16 6 4.6503 0.1978 1.1827 17 6 5.3471 0.0023 0.0025 18 6 4.6702 -0.1956 -1.1851 19 6 3.2768 -0.1987 -1.2005 20 6 2.5480 -0.4092 -2.4677 21 8 1.3334 -0.4107 -2.4768 22 8 3.2305 -0.5996 -3.6136 23 1 3.1123 1.0601 3.1355 24 1 1.5676 0.9106 2.2641 25 1 1.9454 -0.0422 5.3912 26 1 0.4009 -0.1921 4.5190 27 1 -0.5357 -0.5820 8.0589 28 1 5.1903 0.3512 2.1054 29 1 6.4271 0.0041 0.0106 30 1 5.2209 -0.3478 -2.1015 31 1 2.7100 -0.7336 -4.4175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -67.173243 kcal Electronic energy + Delta-G solvation = -17652.823080 eV Core-core repulsion = 14603.378570 eV Total energy + Delta-G solvation = -3049.444510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.71369 -40.09758 -37.64419 -36.99837 -35.32939 -34.20298 -32.64596 -30.73459 -28.65758 -26.23984 -25.25906 -23.90059 -22.22416 -19.87236 -19.08993 -18.65780 -17.99445 -17.19980 -16.88863 -16.84743 -16.45775 -16.05369 -15.47183 -15.09957 -14.71284 -14.59699 -14.50724 -14.23809 -14.11912 -13.91416 -13.70481 -13.34866 -12.88237 -12.75900 -12.70397 -12.63628 -12.39660 -12.14204 -11.70242 -11.60406 -10.85515 -10.77625 -10.16266 -9.88674 -8.53853 -8.36598 -6.50388 -0.71812 -0.23471 1.02174 1.37471 1.39408 1.47687 1.52433 1.65313 1.87674 1.90263 1.96029 2.34143 2.74166 2.84053 2.98057 3.36611 3.68153 3.89699 4.08913 4.19044 4.31907 4.46894 4.60802 4.76268 4.88513 4.90107 5.06790 5.26115 5.31983 5.49912 5.53133 5.69991 5.84182 6.44141 6.56975 6.87513 7.18026 8.75441 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.003907 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.397751 B = 7165.418099 C = 7632.517023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.262 3.738 3 C 0.020 3.980 4 C -0.037 4.037 5 C -0.054 4.054 6 S -0.293 6.293 7 C 0.090 3.910 8 C -0.538 4.538 9 H 0.062 0.938 10 C 0.015 3.985 11 N -0.925 5.925 12 Si 0.977 3.023 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.268 1.268 16 C -0.059 4.059 17 C -0.079 4.079 18 C -0.039 4.039 19 C -0.101 4.101 20 C 0.527 3.473 21 O -0.549 6.549 22 O -0.489 6.489 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.003 0.997 27 H 0.271 0.729 28 H 0.168 0.832 29 H 0.192 0.808 30 H 0.185 0.815 31 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.890 3.149 -18.996 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.052 4.052 3 C 0.015 3.985 4 C -0.041 4.041 5 C -0.202 4.202 6 S -0.064 6.064 7 C -0.057 4.057 8 C -0.577 4.577 9 H 0.081 0.919 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.193 1.193 16 C -0.079 4.079 17 C -0.097 4.097 18 C -0.057 4.057 19 C -0.105 4.105 20 C 0.372 3.628 21 O -0.441 6.441 22 O -0.302 6.302 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.021 0.979 27 H 0.080 0.920 28 H 0.185 0.815 29 H 0.209 0.791 30 H 0.203 0.797 31 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 16.205 2.292 -18.837 24.954 hybrid contribution -1.603 0.639 0.681 1.855 sum 14.601 2.931 -18.157 23.483 Atomic orbital electron populations 1.81100 1.13853 1.08180 1.09238 1.25832 0.93366 0.93885 0.92161 1.15937 0.83247 1.04772 0.94569 1.19263 0.95207 0.99629 0.89955 1.22344 1.02656 0.97919 0.97234 1.86603 1.76041 1.15266 1.28481 1.20770 0.95118 0.99271 0.90559 1.20984 1.38056 0.92646 1.05977 0.91949 1.25925 0.94533 1.00113 0.98049 1.70055 1.39179 1.25108 1.22052 0.85271 0.78192 0.78283 0.78288 1.18709 1.20197 1.19255 1.21700 0.90602 0.93944 1.01612 1.21919 1.03139 0.94804 0.89850 1.21891 0.89879 0.92484 1.01476 1.19003 0.95326 1.08211 0.87923 1.20905 0.84859 0.71856 0.85171 1.90989 1.17098 1.48694 1.87270 1.84457 1.44274 1.83006 1.18496 0.86173 0.91741 0.95638 0.97878 0.92026 0.81470 0.79055 0.79738 0.70166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.56 18.41 19.00 0.35 -19.21 16 2 C 0.26 9.84 11.22 88.33 0.99 10.83 16 3 C 0.02 0.56 5.76 -21.13 -0.12 0.44 16 4 C -0.04 -0.91 5.17 -19.62 -0.10 -1.01 16 5 C -0.05 -1.76 5.66 71.24 0.40 -1.36 16 6 S -0.29 -12.79 21.64 -56.49 -1.22 -14.02 16 7 C 0.09 4.91 5.70 71.24 0.41 5.32 16 8 C -0.54 -31.47 9.13 25.60 0.23 -31.24 16 9 H 0.06 3.63 7.71 -2.91 -0.02 3.60 16 10 C 0.01 0.84 5.46 84.65 0.46 1.30 16 11 N -0.93 -55.50 13.29 21.44 0.28 -55.21 16 12 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 C -0.06 -0.87 9.68 22.29 0.22 -0.65 16 17 C -0.08 -0.62 10.02 22.29 0.22 -0.39 16 18 C -0.04 -0.39 9.61 22.51 0.22 -0.18 16 19 C -0.10 -2.04 5.90 -19.88 -0.12 -2.16 16 20 C 0.53 11.43 8.25 70.32 0.58 12.01 16 21 O -0.55 -17.50 15.12 19.94 0.30 -17.20 16 22 O -0.49 -5.55 12.68 -56.39 -0.72 -6.26 16 23 H 0.12 3.29 8.09 -2.40 -0.02 3.27 16 24 H 0.06 2.35 7.08 -2.39 -0.02 2.33 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 28 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 30 H 0.19 0.61 7.61 -2.91 -0.02 0.58 16 31 H 0.44 1.52 9.11 -74.06 -0.67 0.84 16 Total: -1.00 -82.71 303.86 4.93 -77.78 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: 0.51 Total: -5.35 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 3.39 Total: -7.09 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: 0.63 Total: -74.43 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.41 Total: -23.47 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -12.79 SS G_CDS: -1.22 Total: -14.02 kcal Total: -82.71 4.93 -77.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.609 kcal (2) G-P(sol) polarization free energy of solvation -82.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds