Wall clock time and date at job start Mon Mar 30 2020 01:37:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13592 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.39351 * 120.21222 * 260.27467 * 3 2 1
5 5 C 1.50701 * 120.00603 * 359.97438 * 4 3 2
6 6 S 1.81401 * 109.47346 * 89.99309 * 5 4 3
7 7 C 1.81398 * 102.99726 * 180.02562 * 6 5 4
8 8 C 1.50709 * 109.46986 * 180.02562 * 7 6 5
9 9 H 1.07999 * 119.99448 * 0.02562 * 8 7 6
10 10 C 1.37872 * 119.99852 * 180.02562 * 8 7 6
11 11 N 1.31511 * 120.00287 * 0.02562 * 10 8 7
12 12 Si 1.86800 * 119.99762 * 180.02562 * 10 8 7
13 13 H 1.48501 * 109.47148 * 90.00055 * 12 10 8
14 14 H 1.48503 * 109.47318 * 210.00201 * 12 10 8
15 15 H 1.48499 * 109.47182 * 329.99871 * 12 10 8
16 16 C 1.38123 * 119.98862 * 179.69322 * 4 3 2
17 17 C 1.38439 * 120.43706 * 0.61420 * 16 4 3
18 18 C 1.38116 * 120.43558 * 359.66866 * 17 16 4
19 19 C 1.39355 * 119.99125 * 0.02562 * 18 17 16
20 20 C 1.47688 * 120.21363 * 179.97438 * 19 18 17
21 21 O 1.21469 * 120.00283 * 180.02562 * 20 19 18
22 22 O 1.34729 * 119.99914 * 0.03115 * 20 19 18
23 23 H 1.08991 * 109.47152 * 210.00059 * 5 4 3
24 24 H 1.09002 * 109.46831 * 329.99327 * 5 4 3
25 25 H 1.08999 * 109.47513 * 300.00145 * 7 6 5
26 26 H 1.09004 * 109.47100 * 60.00420 * 7 6 5
27 27 H 0.97001 * 120.00357 * 180.02562 * 11 10 8
28 28 H 1.08005 * 119.78121 * 180.30227 * 16 4 3
29 29 H 1.08006 * 119.78219 * 179.68807 * 17 16 4
30 30 H 1.07999 * 119.99783 * 180.02562 * 18 17 16
31 31 H 0.96702 * 117.00284 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2691 0.2044 1.1869
5 6 2.5205 0.4256 2.4760
6 16 2.2200 -1.1713 3.2825
7 6 1.3239 -0.7052 4.7892
8 6 0.9968 -1.9440 5.5827
9 1 1.2982 -2.9145 5.2172
10 6 0.3127 -1.8383 6.7751
11 7 -0.0547 -0.6565 7.2198
12 14 -0.0921 -3.3737 7.7589
13 1 1.0152 -3.6612 8.7057
14 1 -1.3496 -3.1576 8.5186
15 1 -0.2638 -4.5231 6.8343
16 6 4.6503 0.1978 1.1827
17 6 5.3471 0.0023 0.0025
18 6 4.6702 -0.1956 -1.1851
19 6 3.2768 -0.1987 -1.2005
20 6 2.5480 -0.4092 -2.4677
21 8 1.3334 -0.4107 -2.4768
22 8 3.2305 -0.5996 -3.6136
23 1 3.1123 1.0601 3.1355
24 1 1.5676 0.9106 2.2641
25 1 1.9454 -0.0422 5.3912
26 1 0.4009 -0.1921 4.5190
27 1 -0.5357 -0.5820 8.0589
28 1 5.1903 0.3512 2.1054
29 1 6.4271 0.0041 0.0106
30 1 5.2209 -0.3478 -2.1015
31 1 2.7100 -0.7336 -4.4175
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001610622198.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:00
Heat of formation + Delta-G solvation = -67.173243 kcal
Electronic energy + Delta-G solvation = -17652.823080 eV
Core-core repulsion = 14603.378570 eV
Total energy + Delta-G solvation = -3049.444510 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 277.056 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.71369 -40.09758 -37.64419 -36.99837 -35.32939 -34.20298 -32.64596 -30.73459
-28.65758 -26.23984 -25.25906 -23.90059 -22.22416 -19.87236 -19.08993 -18.65780
-17.99445 -17.19980 -16.88863 -16.84743 -16.45775 -16.05369 -15.47183 -15.09957
-14.71284 -14.59699 -14.50724 -14.23809 -14.11912 -13.91416 -13.70481 -13.34866
-12.88237 -12.75900 -12.70397 -12.63628 -12.39660 -12.14204 -11.70242 -11.60406
-10.85515 -10.77625 -10.16266 -9.88674 -8.53853 -8.36598 -6.50388 -0.71812
-0.23471 1.02174 1.37471 1.39408 1.47687 1.52433 1.65313 1.87674
1.90263 1.96029 2.34143 2.74166 2.84053 2.98057 3.36611 3.68153
3.89699 4.08913 4.19044 4.31907 4.46894 4.60802 4.76268 4.88513
4.90107 5.06790 5.26115 5.31983 5.49912 5.53133 5.69991 5.84182
6.44141 6.56975 6.87513 7.18026 8.75441
Molecular weight = 277.06amu
Principal moments of inertia in cm(-1)
A = 0.028466 B = 0.003907 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 983.397751 B = 7165.418099 C = 7632.517023
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.447 5.447
2 C 0.262 3.738
3 C 0.020 3.980
4 C -0.037 4.037
5 C -0.054 4.054
6 S -0.293 6.293
7 C 0.090 3.910
8 C -0.538 4.538
9 H 0.062 0.938
10 C 0.015 3.985
11 N -0.925 5.925
12 Si 0.977 3.023
13 H -0.262 1.262
14 H -0.277 1.277
15 H -0.268 1.268
16 C -0.059 4.059
17 C -0.079 4.079
18 C -0.039 4.039
19 C -0.101 4.101
20 C 0.527 3.473
21 O -0.549 6.549
22 O -0.489 6.489
23 H 0.120 0.880
24 H 0.064 0.936
25 H 0.025 0.975
26 H 0.003 0.997
27 H 0.271 0.729
28 H 0.168 0.832
29 H 0.192 0.808
30 H 0.185 0.815
31 H 0.436 0.564
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.890 3.149 -18.996 26.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.124 5.124
2 C -0.052 4.052
3 C 0.015 3.985
4 C -0.041 4.041
5 C -0.202 4.202
6 S -0.064 6.064
7 C -0.057 4.057
8 C -0.577 4.577
9 H 0.081 0.919
10 C -0.186 4.186
11 N -0.564 5.564
12 Si 0.800 3.200
13 H -0.187 1.187
14 H -0.202 1.202
15 H -0.193 1.193
16 C -0.079 4.079
17 C -0.097 4.097
18 C -0.057 4.057
19 C -0.105 4.105
20 C 0.372 3.628
21 O -0.441 6.441
22 O -0.302 6.302
23 H 0.138 0.862
24 H 0.083 0.917
25 H 0.044 0.956
26 H 0.021 0.979
27 H 0.080 0.920
28 H 0.185 0.815
29 H 0.209 0.791
30 H 0.203 0.797
31 H 0.298 0.702
Dipole moment (debyes) X Y Z Total
from point charges 16.205 2.292 -18.837 24.954
hybrid contribution -1.603 0.639 0.681 1.855
sum 14.601 2.931 -18.157 23.483
Atomic orbital electron populations
1.81100 1.13853 1.08180 1.09238 1.25832 0.93366 0.93885 0.92161
1.15937 0.83247 1.04772 0.94569 1.19263 0.95207 0.99629 0.89955
1.22344 1.02656 0.97919 0.97234 1.86603 1.76041 1.15266 1.28481
1.20770 0.95118 0.99271 0.90559 1.20984 1.38056 0.92646 1.05977
0.91949 1.25925 0.94533 1.00113 0.98049 1.70055 1.39179 1.25108
1.22052 0.85271 0.78192 0.78283 0.78288 1.18709 1.20197 1.19255
1.21700 0.90602 0.93944 1.01612 1.21919 1.03139 0.94804 0.89850
1.21891 0.89879 0.92484 1.01476 1.19003 0.95326 1.08211 0.87923
1.20905 0.84859 0.71856 0.85171 1.90989 1.17098 1.48694 1.87270
1.84457 1.44274 1.83006 1.18496 0.86173 0.91741 0.95638 0.97878
0.92026 0.81470 0.79055 0.79738 0.70166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -19.56 18.41 19.00 0.35 -19.21 16
2 C 0.26 9.84 11.22 88.33 0.99 10.83 16
3 C 0.02 0.56 5.76 -21.13 -0.12 0.44 16
4 C -0.04 -0.91 5.17 -19.62 -0.10 -1.01 16
5 C -0.05 -1.76 5.66 71.24 0.40 -1.36 16
6 S -0.29 -12.79 21.64 -56.49 -1.22 -14.02 16
7 C 0.09 4.91 5.70 71.24 0.41 5.32 16
8 C -0.54 -31.47 9.13 25.60 0.23 -31.24 16
9 H 0.06 3.63 7.71 -2.91 -0.02 3.60 16
10 C 0.01 0.84 5.46 84.65 0.46 1.30 16
11 N -0.93 -55.50 13.29 21.44 0.28 -55.21 16
12 Si 0.98 44.54 29.54 68.60 2.03 46.57 16
13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16
14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16
15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
16 C -0.06 -0.87 9.68 22.29 0.22 -0.65 16
17 C -0.08 -0.62 10.02 22.29 0.22 -0.39 16
18 C -0.04 -0.39 9.61 22.51 0.22 -0.18 16
19 C -0.10 -2.04 5.90 -19.88 -0.12 -2.16 16
20 C 0.53 11.43 8.25 70.32 0.58 12.01 16
21 O -0.55 -17.50 15.12 19.94 0.30 -17.20 16
22 O -0.49 -5.55 12.68 -56.39 -0.72 -6.26 16
23 H 0.12 3.29 8.09 -2.40 -0.02 3.27 16
24 H 0.06 2.35 7.08 -2.39 -0.02 2.33 16
25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
26 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16
27 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16
28 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16
29 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16
30 H 0.19 0.61 7.61 -2.91 -0.02 0.58 16
31 H 0.44 1.52 9.11 -74.06 -0.67 0.84 16
Total: -1.00 -82.71 303.86 4.93 -77.78
By element:
Atomic # 1 Polarization: -5.86 SS G_CDS: 0.51 Total: -5.35 kcal
Atomic # 6 Polarization: -10.48 SS G_CDS: 3.39 Total: -7.09 kcal
Atomic # 7 Polarization: -75.06 SS G_CDS: 0.63 Total: -74.43 kcal
Atomic # 8 Polarization: -23.05 SS G_CDS: -0.41 Total: -23.47 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal
Atomic # 16 Polarization: -12.79 SS G_CDS: -1.22 Total: -14.02 kcal
Total: -82.71 4.93 -77.78 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610622198.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.609 kcal
(2) G-P(sol) polarization free energy of solvation -82.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds