Wall clock time and date at job start Mon Mar 30 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29560 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48501 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47089 * 299.99875 * 3 2 1 6 6 H 1.48501 * 109.47086 * 59.99773 * 3 2 1 7 7 C 1.46305 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.33579 * 119.99987 * 0.02562 * 7 2 1 10 10 N 1.40286 * 126.56495 * 0.28982 * 9 7 2 11 11 C 1.30719 * 107.67336 * 180.16553 * 10 9 7 12 12 C 1.47679 * 125.50216 * 179.85124 * 11 10 9 13 13 C 1.39699 * 120.15665 * 186.05143 * 12 11 10 14 14 C 1.37902 * 119.84264 * 179.97438 * 13 12 11 15 15 C 1.38407 * 120.15810 * 359.97438 * 14 13 12 16 16 C 1.38372 * 120.31055 * 359.74590 * 15 14 13 17 17 C 1.37948 * 120.14993 * 0.51467 * 16 15 14 18 18 N 1.48019 * 120.07654 * 179.76951 * 17 16 15 19 19 O 1.31700 * 120.00180 * 49.05273 * 18 17 16 20 20 O 1.31699 * 119.99807 * 228.78068 * 18 17 16 21 21 O 1.34997 * 108.99827 * 359.58944 * 11 10 9 22 22 C 1.34420 * 108.89635 * 0.26661 * 21 11 10 23 23 O 1.21450 * 126.21880 * 180.02562 * 22 21 11 24 24 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.07882 * 359.97438 * 13 12 11 26 26 H 1.08000 * 119.91772 * 179.97438 * 14 13 12 27 27 H 1.07993 * 119.84750 * 180.02562 * 15 14 13 28 28 H 1.07992 * 119.92673 * 180.27562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2956 0.0000 0.0000 3 14 2.2296 1.6178 0.0000 4 1 3.6896 1.3464 -0.0006 5 1 1.8708 2.3964 -1.2125 6 1 1.8707 2.3965 1.2125 7 6 2.0272 -1.2670 0.0006 8 1 3.1072 -1.2670 0.0010 9 7 1.3593 -2.4239 0.0006 10 7 -0.0344 -2.5843 -0.0056 11 6 -0.2862 -3.8670 0.0003 12 6 -1.6312 -4.4769 0.0000 13 6 -1.7745 -5.8600 0.1340 14 6 -3.0336 -6.4227 0.1335 15 6 -4.1536 -5.6205 0.0010 16 6 -4.0194 -4.2492 -0.1264 17 6 -2.7658 -3.6734 -0.1328 18 7 -2.6239 -2.2068 -0.2743 19 8 -3.3392 -1.4000 0.4818 20 8 -1.7782 -1.7088 -1.1526 21 8 0.8816 -4.5441 0.0009 22 6 1.8962 -3.6623 0.0011 23 8 3.0806 -3.9311 0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 -0.9014 -6.4872 0.2379 26 1 -3.1458 -7.4919 0.2366 27 1 -5.1372 -6.0663 0.0016 28 1 -4.8977 -3.6287 -0.2249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613760887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:28 Heat of formation + Delta-G solvation = 59.986857 kcal Electronic energy + Delta-G solvation = -21421.796977 eV Core-core repulsion = 17831.573329 eV Total energy + Delta-G solvation = -3590.223649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.07221 -41.02823 -38.98541 -38.60152 -37.47872 -35.18695 -34.75417 -33.73051 -32.73905 -31.44737 -28.03953 -27.26812 -25.15079 -24.25214 -22.99196 -22.48514 -20.69043 -19.54579 -18.82694 -18.48300 -18.21219 -17.63307 -17.23855 -16.98050 -16.42565 -16.01228 -15.67526 -15.58552 -15.18248 -14.70998 -14.03906 -13.93050 -13.61141 -13.33348 -12.94322 -12.72774 -12.66195 -12.56458 -12.18237 -12.07361 -11.87219 -11.68761 -11.31422 -11.08330 -10.75476 -10.53107 -9.76524 -8.66034 -6.22887 -1.49313 -0.47742 -0.05732 0.34676 1.03779 1.12825 1.21223 1.43802 1.60048 1.65212 1.86895 2.25049 2.35955 2.85014 3.17165 3.48062 3.59948 3.90550 3.97668 4.02080 4.18021 4.55031 4.67084 4.82510 4.90408 4.93533 5.07586 5.12789 5.53985 5.66665 5.80376 6.06027 6.43981 6.91316 7.28166 8.28451 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.007601 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.567651 B = 3682.599656 C = 4920.283594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.016 3.984 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.372 4.372 8 H 0.130 0.870 9 N -0.214 5.214 10 N -0.200 5.200 11 C 0.088 3.912 12 C 0.035 3.965 13 C -0.095 4.095 14 C -0.046 4.046 15 C -0.083 4.083 16 C -0.060 4.060 17 C -0.008 4.008 18 N -0.033 5.033 19 O -0.227 6.227 20 O -0.094 6.094 21 O -0.257 6.257 22 C 0.470 3.530 23 O -0.572 6.572 24 H 0.298 0.702 25 H 0.158 0.842 26 H 0.201 0.799 27 H 0.203 0.797 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 -9.508 -0.034 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.207 4.207 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.147 0.853 9 N -0.024 5.024 10 N -0.041 5.041 11 C -0.122 4.122 12 C 0.032 3.968 13 C -0.115 4.115 14 C -0.064 4.064 15 C -0.102 4.102 16 C -0.079 4.079 17 C -0.094 4.094 18 N 0.453 4.547 19 O -0.408 6.408 20 O -0.308 6.308 21 O -0.153 6.153 22 C 0.231 3.769 23 O -0.467 6.467 24 H 0.110 0.890 25 H 0.176 0.824 26 H 0.218 0.782 27 H 0.220 0.780 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.254 -9.637 0.152 16.388 hybrid contribution 1.311 0.875 -0.091 1.579 sum -11.943 -8.761 0.061 14.812 Atomic orbital electron populations 1.69300 1.08640 1.31614 1.27498 1.28150 0.96187 1.02657 0.93717 0.84554 0.78692 0.73763 0.79290 1.17786 1.18304 1.18509 1.21207 0.92330 0.80056 1.56854 0.85315 1.44901 1.02139 1.06478 1.48924 1.78714 0.93872 1.12309 1.19242 1.24114 0.87420 0.87019 1.13601 1.17219 0.82515 0.94726 1.02340 1.21613 1.01898 0.89357 0.98666 1.22037 0.89258 1.03615 0.91452 1.21919 1.02516 0.89576 0.96174 1.21296 0.92729 0.98135 0.95752 1.20614 0.96901 0.76213 1.15641 1.50530 0.99074 1.04837 1.00300 1.96148 1.44636 1.58034 1.41987 1.96369 1.26016 1.81940 1.26501 1.84742 1.15323 1.37149 1.78078 1.19073 0.84954 0.80766 0.92150 1.90838 1.09752 1.81111 1.65005 0.88994 0.82398 0.78214 0.77962 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.56 10.42 23.16 0.24 -40.32 15 2 C 0.02 0.81 5.68 87.13 0.50 1.30 15 3 Si 1.02 39.10 29.64 68.60 2.03 41.14 15 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 15 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 7 C -0.37 -21.42 10.33 86.53 0.89 -20.53 15 8 H 0.13 7.27 7.89 -2.91 -0.02 7.25 15 9 N -0.21 -12.75 3.59 -429.22 -1.54 -14.29 15 10 N -0.20 -11.23 6.67 -166.73 -1.11 -12.34 15 11 C 0.09 4.27 7.73 87.35 0.68 4.95 15 12 C 0.04 1.28 5.87 -20.08 -0.12 1.17 15 13 C -0.09 -2.22 9.72 22.54 0.22 -2.00 15 14 C -0.05 -0.55 10.03 22.23 0.22 -0.32 15 15 C -0.08 -0.93 10.04 22.34 0.22 -0.71 15 16 C -0.06 -1.30 9.83 22.23 0.22 -1.09 15 17 C -0.01 -0.30 6.42 36.65 0.24 -0.06 15 18 N -0.03 -1.50 4.21 -45.80 -0.19 -1.70 15 19 O -0.23 -10.57 19.86 3.51 0.07 -10.50 15 20 O -0.09 -4.90 15.00 3.52 0.05 -4.85 15 21 O -0.26 -13.19 10.45 12.58 0.13 -13.05 15 22 C 0.47 27.53 9.14 129.76 1.19 28.72 15 23 O -0.57 -35.30 17.82 19.59 0.35 -34.95 15 24 H 0.30 14.80 8.27 -92.71 -0.77 14.04 15 25 H 0.16 3.42 7.91 -2.91 -0.02 3.40 15 26 H 0.20 0.33 8.06 -2.91 -0.02 0.31 15 27 H 0.20 0.18 8.06 -2.91 -0.02 0.16 15 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -83.14 272.02 5.52 -77.61 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.24 Total: 1.82 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 4.25 Total: 11.43 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -2.60 Total: -68.65 kcal Atomic # 8 Polarization: -63.96 SS G_CDS: 0.60 Total: -63.36 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.14 kcal Total: -83.14 5.52 -77.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613760887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.600 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds