Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47296 * 299.99925 * 3 2 1 6 6 H 1.48508 * 109.47135 * 59.99783 * 3 2 1 7 7 C 1.38950 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99785 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00185 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99873 * 179.97438 * 10 9 7 13 13 F 1.39900 * 109.46844 * 85.00603 * 12 10 9 14 14 F 1.39897 * 109.47532 * 325.00329 * 12 10 9 15 15 C 1.50706 * 109.47294 * 205.00039 * 12 10 9 16 16 C 1.38210 * 119.97214 * 89.72482 * 15 12 10 17 17 C 1.38470 * 120.02255 * 179.77133 * 16 15 12 18 18 F 1.35105 * 120.01000 * 180.27671 * 17 16 15 19 19 C 1.38418 * 119.97812 * 0.52900 * 17 16 15 20 20 C 1.38423 * 119.94596 * 359.72860 * 19 17 16 21 21 F 1.35098 * 120.01179 * 179.97438 * 20 19 17 22 22 C 1.38203 * 119.97577 * 270.00783 * 15 12 10 23 23 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99887 * 0.02562 * 9 7 2 25 25 H 1.08003 * 119.98878 * 0.02562 * 16 15 12 26 26 H 1.07990 * 120.02745 * 179.70341 * 19 17 16 27 27 H 1.08001 * 119.98692 * 359.97056 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 9 0.9097 -5.2090 -1.3147 14 9 0.0758 -4.7268 0.7568 15 6 2.1085 -5.9420 0.5982 16 6 2.0720 -6.1798 1.9592 17 6 2.8625 -7.1742 2.5103 18 9 2.8224 -7.4102 3.8400 19 6 3.6977 -7.9228 1.6991 20 6 3.7374 -7.6801 0.3369 21 9 4.5525 -8.4097 -0.4559 22 6 2.9417 -6.6890 -0.2127 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 1.4235 -5.5926 2.5926 26 1 4.3181 -8.6953 2.1287 27 1 2.9725 -6.4995 -1.2755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632150432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -196.212907 kcal Electronic energy + Delta-G solvation = -21128.666470 eV Core-core repulsion = 16965.556464 eV Total energy + Delta-G solvation = -4163.110006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.06934 -49.04990 -48.85585 -46.86024 -39.07793 -38.04670 -34.37038 -31.92998 -31.56202 -30.41585 -27.41255 -25.05652 -22.94594 -22.47447 -20.10255 -18.59405 -18.28598 -17.74535 -17.15328 -16.57883 -16.52556 -16.04302 -15.95746 -15.55981 -15.35738 -15.06795 -14.39335 -14.20973 -13.87143 -13.70234 -13.23941 -13.19590 -12.82944 -12.72307 -12.33412 -11.99825 -11.99551 -11.79417 -11.36738 -11.26797 -10.54189 -10.45259 -9.83412 -9.24239 -8.83950 -8.76879 -8.31512 -6.71328 -4.13346 0.75382 0.89928 2.91618 3.11554 3.16048 3.21720 3.32963 3.39694 3.81434 3.99888 4.17894 4.22377 4.61907 4.69357 4.76877 4.93016 5.04290 5.24321 5.33442 5.66354 5.76604 5.83473 5.91263 6.14098 6.61943 7.28110 7.67715 8.18979 8.82060 9.11005 9.57194 10.43942 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.004965 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.604576 B = 5637.684512 C = 5724.086761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.308 4.308 8 H 0.112 0.888 9 N -0.518 5.518 10 C 0.389 3.611 11 O -0.561 6.561 12 C 0.334 3.666 13 F -0.183 7.183 14 F -0.186 7.186 15 C -0.062 4.062 16 C -0.126 4.126 17 C 0.127 3.873 18 F -0.129 7.129 19 C -0.179 4.179 20 C 0.127 3.873 21 F -0.129 7.129 22 C -0.113 4.113 23 H 0.279 0.721 24 H 0.400 0.600 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -11.892 2.344 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.151 5.151 10 C 0.171 3.829 11 O -0.446 6.446 12 C 0.293 3.707 13 F -0.164 7.164 14 F -0.167 7.167 15 C -0.064 4.064 16 C -0.145 4.145 17 C 0.108 3.892 18 F -0.107 7.107 19 C -0.198 4.198 20 C 0.108 3.892 21 F -0.107 7.107 22 C -0.132 4.132 23 H 0.089 0.911 24 H 0.235 0.765 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.392 -11.743 2.348 12.212 hybrid contribution -0.322 0.587 0.028 0.670 sum 2.071 -11.156 2.376 11.593 Atomic orbital electron populations 1.69633 1.06219 1.29121 1.46847 1.25467 0.95740 1.00358 0.95818 0.85663 0.79793 0.80048 0.78085 1.18795 1.20277 1.20284 1.19916 0.93784 0.81436 1.48547 0.86991 1.41896 1.09979 1.04298 1.58974 1.19428 0.88510 0.83906 0.91075 1.90607 1.12054 1.85009 1.56954 1.19940 0.81020 0.95069 0.74637 1.93040 1.93075 1.93369 1.36878 1.93027 1.51113 1.96733 1.75837 1.19458 0.97929 0.95349 0.93648 1.20932 1.00593 0.98158 0.94852 1.16988 0.97831 0.96627 0.77759 1.91537 1.95325 1.93635 1.30227 1.21039 1.02731 1.03591 0.92455 1.17016 0.91970 0.92542 0.87671 1.91533 1.70246 1.75547 1.73399 1.20902 0.95586 0.94605 1.02156 0.91101 0.76514 0.83067 0.83137 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.76 13.05 55.50 0.72 -22.04 15 2 C 0.03 0.80 5.50 -17.47 -0.10 0.70 15 3 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 15 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 7 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 15 8 H 0.11 3.08 7.16 -52.49 -0.38 2.70 15 9 N -0.52 -12.98 5.22 -10.96 -0.06 -13.03 15 10 C 0.39 9.15 7.18 -10.99 -0.08 9.07 15 11 O -0.56 -14.58 15.81 5.55 0.09 -14.49 15 12 C 0.33 6.45 2.21 -29.03 -0.06 6.38 15 13 F -0.18 -3.43 16.19 2.25 0.04 -3.39 15 14 F -0.19 -3.44 15.66 2.25 0.04 -3.40 15 15 C -0.06 -1.06 4.38 -104.64 -0.46 -1.52 15 16 C -0.13 -1.94 9.38 -39.51 -0.37 -2.31 15 17 C 0.13 1.74 7.30 -39.43 -0.29 1.45 15 18 F -0.13 -1.70 17.27 2.25 0.04 -1.66 15 19 C -0.18 -2.23 10.01 -39.45 -0.39 -2.62 15 20 C 0.13 1.76 7.30 -39.43 -0.29 1.47 15 21 F -0.13 -1.71 17.27 2.25 0.04 -1.67 15 22 C -0.11 -1.76 9.34 -39.51 -0.37 -2.13 15 23 H 0.28 6.72 8.31 -40.82 -0.34 6.38 15 24 H 0.40 9.77 7.46 -40.82 -0.30 9.47 15 25 H 0.15 2.19 7.61 -52.48 -0.40 1.79 15 26 H 0.15 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.15 2.25 7.60 -52.49 -0.40 1.85 15 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -27.69 269.80 -3.64 -31.33 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.04 Total: 7.42 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.55 Total: 2.17 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.67 Total: -35.07 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 0.15 Total: -10.13 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.69 -3.64 -31.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632150432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.884 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds