Wall clock time and date at job start Mon Mar 30 2020 01:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47296 * 299.99925 * 3 2 1 6 6 H 1.48508 * 109.47135 * 59.99783 * 3 2 1 7 7 C 1.38950 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99785 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00185 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99873 * 179.97438 * 10 9 7 13 13 F 1.39900 * 109.46844 * 85.00603 * 12 10 9 14 14 F 1.39897 * 109.47532 * 325.00329 * 12 10 9 15 15 C 1.50706 * 109.47294 * 205.00039 * 12 10 9 16 16 C 1.38210 * 119.97214 * 89.72482 * 15 12 10 17 17 C 1.38470 * 120.02255 * 179.77133 * 16 15 12 18 18 F 1.35105 * 120.01000 * 180.27671 * 17 16 15 19 19 C 1.38418 * 119.97812 * 0.52900 * 17 16 15 20 20 C 1.38423 * 119.94596 * 359.72860 * 19 17 16 21 21 F 1.35098 * 120.01179 * 179.97438 * 20 19 17 22 22 C 1.38203 * 119.97577 * 270.00783 * 15 12 10 23 23 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99887 * 0.02562 * 9 7 2 25 25 H 1.08003 * 119.98878 * 0.02562 * 16 15 12 26 26 H 1.07990 * 120.02745 * 179.70341 * 19 17 16 27 27 H 1.08001 * 119.98692 * 359.97056 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 9 0.9097 -5.2090 -1.3147 14 9 0.0758 -4.7268 0.7568 15 6 2.1085 -5.9420 0.5982 16 6 2.0720 -6.1798 1.9592 17 6 2.8625 -7.1742 2.5103 18 9 2.8224 -7.4102 3.8400 19 6 3.6977 -7.9228 1.6991 20 6 3.7374 -7.6801 0.3369 21 9 4.5525 -8.4097 -0.4559 22 6 2.9417 -6.6890 -0.2127 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 1.4235 -5.5926 2.5926 26 1 4.3181 -8.6953 2.1287 27 1 2.9725 -6.4995 -1.2755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632150432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:11 Heat of formation + Delta-G solvation = -212.149249 kcal Electronic energy + Delta-G solvation = -21129.357522 eV Core-core repulsion = 16965.556464 eV Total energy + Delta-G solvation = -4163.801058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.41003 -50.14046 -50.12006 -48.40652 -40.51990 -39.70001 -36.31478 -33.53458 -33.18721 -31.56380 -29.00696 -26.84182 -24.08418 -23.87078 -21.78049 -20.42775 -19.69883 -19.18335 -18.84698 -17.85341 -17.68006 -17.38642 -17.08502 -16.90703 -16.68701 -16.42324 -16.01315 -15.63819 -15.45423 -15.42134 -14.98728 -14.72752 -14.32270 -13.99132 -13.76954 -13.63214 -13.17854 -13.14040 -13.00092 -12.69817 -12.53734 -12.11771 -11.71085 -10.75993 -10.32073 -10.27275 -9.95703 -8.64833 -6.17117 -0.40840 -0.24388 1.15631 1.41359 1.55948 1.59989 1.83950 2.04359 2.25504 2.49264 2.81250 2.91594 3.01122 3.12544 3.54480 3.70977 3.75448 3.86152 3.87637 4.19176 4.54024 4.75525 4.76435 4.91342 5.26820 5.50912 5.70290 6.23494 6.84817 7.15138 7.63332 8.51233 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.004965 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.604576 B = 5637.684512 C = 5724.086761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.003 4.003 3 Si 1.005 2.995 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.529 5.529 10 C 0.387 3.613 11 O -0.588 6.588 12 C 0.345 3.655 13 F -0.180 7.180 14 F -0.182 7.182 15 C -0.085 4.085 16 C -0.133 4.133 17 C 0.131 3.869 18 F -0.123 7.123 19 C -0.157 4.157 20 C 0.131 3.869 21 F -0.124 7.124 22 C -0.123 4.123 23 H 0.287 0.713 24 H 0.400 0.600 25 H 0.154 0.846 26 H 0.186 0.814 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.535 2.938 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.206 4.206 3 Si 0.826 3.174 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.113 0.887 9 N -0.163 5.163 10 C 0.171 3.829 11 O -0.475 6.475 12 C 0.305 3.695 13 F -0.161 7.161 14 F -0.162 7.162 15 C -0.087 4.087 16 C -0.152 4.152 17 C 0.112 3.888 18 F -0.102 7.102 19 C -0.176 4.176 20 C 0.111 3.889 21 F -0.102 7.102 22 C -0.142 4.142 23 H 0.097 0.903 24 H 0.235 0.765 25 H 0.171 0.829 26 H 0.204 0.796 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.978 -12.404 2.941 13.091 hybrid contribution -0.508 0.702 -0.147 0.879 sum 2.470 -11.702 2.794 12.282 Atomic orbital electron populations 1.69686 1.07292 1.30433 1.46688 1.26319 0.96583 1.03087 0.94565 0.84708 0.78187 0.75803 0.78667 1.19108 1.19217 1.19153 1.19945 0.93371 0.82807 1.51046 0.88710 1.41990 1.09947 1.04702 1.59622 1.20117 0.88563 0.84963 0.89271 1.90571 1.13421 1.85982 1.57481 1.19500 0.81190 0.93699 0.75092 1.93040 1.93051 1.93139 1.36828 1.93034 1.50807 1.96713 1.75690 1.19265 0.99049 0.95833 0.94506 1.21018 1.01123 0.98835 0.94266 1.16922 0.97608 0.96243 0.78065 1.91557 1.95266 1.93516 1.29831 1.21335 1.01557 1.03120 0.91555 1.16949 0.91644 0.92087 0.88209 1.91552 1.69967 1.75265 1.73411 1.20974 0.95802 0.95162 1.02218 0.90349 0.76496 0.82861 0.79624 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.70 13.05 21.66 0.28 -46.41 15 2 C 0.00 -0.13 5.50 84.93 0.47 0.34 15 3 Si 1.00 40.15 29.55 68.60 2.03 42.17 15 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 15 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.34 -18.65 9.68 84.04 0.81 -17.83 15 8 H 0.09 5.38 7.16 -2.91 -0.02 5.36 15 9 N -0.53 -27.16 5.22 -306.99 -1.60 -28.76 15 10 C 0.39 18.61 7.18 87.66 0.63 19.24 15 11 O -0.59 -31.19 15.81 -3.06 -0.05 -31.24 15 12 C 0.35 13.43 2.21 29.10 0.06 13.49 15 13 F -0.18 -6.77 16.19 44.97 0.73 -6.04 15 14 F -0.18 -6.73 15.66 44.97 0.70 -6.03 15 15 C -0.08 -2.85 4.38 -19.88 -0.09 -2.94 15 16 C -0.13 -3.96 9.38 22.32 0.21 -3.75 15 17 C 0.13 3.28 7.30 22.37 0.16 3.45 15 18 F -0.12 -2.95 17.27 44.97 0.78 -2.17 15 19 C -0.16 -3.41 10.01 22.36 0.22 -3.18 15 20 C 0.13 3.31 7.30 22.37 0.16 3.47 15 21 F -0.12 -2.99 17.27 44.97 0.78 -2.21 15 22 C -0.12 -3.70 9.34 22.32 0.21 -3.49 15 23 H 0.29 13.64 8.31 -92.71 -0.77 12.87 15 24 H 0.40 20.05 7.46 -92.71 -0.69 19.36 15 25 H 0.15 4.36 7.61 -2.91 -0.02 4.34 15 26 H 0.19 2.73 8.06 -2.92 -0.02 2.71 15 27 H 0.15 4.44 7.60 -2.91 -0.02 4.42 15 Total: -1.00 -58.86 269.80 7.07 -51.79 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.57 Total: 20.11 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 2.86 Total: 8.79 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.32 Total: -75.17 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 9 Polarization: -19.43 SS G_CDS: 2.99 Total: -16.45 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -58.86 7.07 -51.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632150432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.362 kcal (2) G-P(sol) polarization free energy of solvation -58.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds