Wall clock time and date at job start Mon Mar 30 2020 01:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35954 * 116.99920 * 2 1 4 4 C 1.38736 * 119.98699 * 179.97438 * 3 2 1 5 5 C 1.38073 * 120.00688 * 179.97438 * 4 3 2 6 6 C 1.38825 * 119.99143 * 359.97438 * 5 4 3 7 7 N 1.40332 * 120.00924 * 179.97438 * 6 5 4 8 8 C 1.36661 * 127.14889 * 310.01082 * 7 6 5 9 9 N 1.30526 * 107.35032 * 179.75853 * 8 7 6 10 10 N 1.28519 * 110.11647 * 0.25156 * 9 8 7 11 11 C 1.31440 * 109.84783 * 359.97438 * 10 9 8 12 12 S 1.76197 * 126.50564 * 180.02562 * 11 10 9 13 13 C 1.76198 * 100.00116 * 359.97438 * 12 11 10 14 14 H 1.07996 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.38667 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31644 * 120.00266 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00195 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46749 * 59.99651 * 17 15 13 19 19 H 1.48497 * 109.47197 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46939 * 300.00131 * 17 15 13 21 21 C 1.38822 * 119.97914 * 0.24282 * 6 5 4 22 22 C 1.38076 * 119.98952 * 359.51790 * 21 6 5 23 23 H 1.08995 * 109.46559 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46741 * 300.00286 * 1 2 3 25 25 H 1.09001 * 109.46811 * 59.99856 * 1 2 3 26 26 H 1.07998 * 119.99959 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.00544 * 180.02562 * 5 4 3 28 28 H 1.08002 * 126.32833 * 0.03380 * 8 7 6 29 29 H 0.96999 * 120.00195 * 180.02562 * 16 15 13 30 30 H 1.07997 * 120.00702 * 179.73107 * 21 6 5 31 31 H 1.07996 * 119.99631 * 180.20881 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0590 2.5137 0.0000 6 6 3.3031 3.6781 -0.0016 7 7 3.9402 4.9285 -0.0016 8 6 4.9379 5.3464 0.8336 9 7 5.2462 6.5676 0.4913 10 7 4.5130 6.9492 -0.4929 11 6 3.6895 5.9841 -0.8364 12 16 2.4946 6.0367 -2.1302 13 6 2.7681 7.6695 -2.7332 14 1 3.5213 8.2945 -2.2768 15 6 2.0154 8.1523 -3.7930 16 7 1.0969 7.3906 -4.3490 17 14 2.3049 9.8837 -4.4320 18 1 3.7080 10.0099 -4.9014 19 1 1.3793 10.1559 -5.5608 20 1 2.0579 10.8613 -3.3418 21 6 1.9168 3.6052 0.0024 22 6 1.2904 2.3748 -0.0020 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0197 0.3778 0.0014 27 1 5.1375 2.5700 0.0000 28 1 5.3910 4.7708 1.6273 29 1 0.5707 7.7282 -5.0906 30 1 1.3283 4.5108 0.0055 31 1 0.2119 2.3179 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006621918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:12 Heat of formation + Delta-G solvation = 68.278756 kcal Electronic energy + Delta-G solvation = -18161.153155 eV Core-core repulsion = 15149.875036 eV Total energy + Delta-G solvation = -3011.278120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19538 -40.17348 -37.75628 -33.91767 -32.66157 -31.33929 -29.82949 -29.18888 -27.30453 -25.70724 -23.49191 -23.01250 -21.40134 -21.11028 -18.67120 -18.20441 -17.30056 -16.46551 -15.90624 -15.47728 -15.12581 -14.93781 -14.69545 -14.42591 -13.82302 -13.56496 -13.07072 -13.02744 -12.85759 -12.16562 -11.52278 -11.38995 -11.15737 -11.12056 -11.01862 -10.66931 -10.24245 -10.06948 -9.89694 -9.68504 -9.19313 -8.92092 -8.84371 -8.11628 -6.80602 -6.47537 -4.21992 1.05092 1.19381 2.40702 2.46335 3.06204 3.22779 3.23017 3.27359 3.33158 3.57964 3.58555 4.01793 4.65022 4.71012 4.91180 4.93541 4.96286 4.97498 5.08184 5.14517 5.26319 5.29162 5.42142 5.79607 5.83919 6.04441 6.06847 6.19084 6.43565 6.48797 6.72961 7.15180 7.53046 7.56807 8.36464 9.04417 9.41911 10.60527 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.005266 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.876558 B = 5315.463870 C = 6483.863115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.138 4.138 5 C -0.075 4.075 6 C 0.097 3.903 7 N -0.436 5.436 8 C 0.121 3.879 9 N -0.292 5.292 10 N -0.308 5.308 11 C 0.172 3.828 12 S 0.142 5.858 13 C -0.536 4.536 14 H 0.104 0.896 15 C 0.077 3.923 16 N -0.879 5.879 17 Si 0.933 3.067 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.062 4.062 22 C -0.188 4.188 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.209 0.791 29 H 0.274 0.726 30 H 0.141 0.859 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -14.909 8.404 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.082 3.918 4 C -0.157 4.157 5 C -0.095 4.095 6 C 0.004 3.996 7 N -0.130 5.130 8 C -0.169 4.169 9 N -0.129 5.129 10 N -0.152 5.152 11 C -0.198 4.198 12 S 0.375 5.625 13 C -0.684 4.684 14 H 0.122 0.878 15 C -0.133 4.133 16 N -0.514 5.514 17 Si 0.758 3.242 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.082 4.082 22 C -0.207 4.207 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.226 0.774 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.941 -14.483 7.844 16.585 hybrid contribution 0.162 0.761 0.065 0.780 sum -1.779 -13.722 7.909 15.938 Atomic orbital electron populations 1.23101 0.78169 1.03971 1.01782 1.86068 1.21594 1.26707 1.88633 1.19066 0.92319 0.84230 0.96206 1.20199 0.91341 0.97904 1.06239 1.20842 1.00119 0.90060 0.98511 1.17508 0.91651 0.83109 1.07285 1.43925 1.30637 1.11082 1.27319 1.26360 0.94488 0.95736 1.00317 1.73909 1.20527 1.09000 1.09504 1.74769 1.07230 1.22792 1.10442 1.28668 1.04905 0.85644 1.00589 1.83516 1.32746 1.22027 1.24191 1.23207 1.26049 0.98493 1.20695 0.87756 1.25065 0.93808 0.99526 0.94868 1.69941 1.21050 1.36976 1.23408 0.85974 0.78623 0.81378 0.78246 1.19407 1.20785 1.19404 1.21016 0.92715 0.98713 0.95785 1.21113 1.00485 0.91256 1.07829 0.88238 0.92501 0.92186 0.84389 0.84580 0.77433 0.91578 0.84131 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.42 10.50 -19.59 -0.21 -3.63 16 3 C 0.13 1.53 6.69 -39.21 -0.26 1.27 16 4 C -0.14 -1.59 9.98 -39.46 -0.39 -1.99 16 5 C -0.08 -0.97 9.71 -39.42 -0.38 -1.35 16 6 C 0.10 1.54 5.93 -83.53 -0.50 1.05 16 7 N -0.44 -8.34 2.91 -61.81 -0.18 -8.52 16 8 C 0.12 2.17 12.52 -88.86 -1.11 1.06 16 9 N -0.29 -6.52 12.18 29.92 0.36 -6.15 16 10 N -0.31 -7.82 11.04 30.77 0.34 -7.49 16 11 C 0.17 4.05 7.90 -87.87 -0.69 3.36 16 12 S 0.14 3.58 20.47 -107.50 -2.20 1.38 16 13 C -0.54 -15.11 9.37 30.89 0.29 -14.82 16 14 H 0.10 3.04 6.93 -52.49 -0.36 2.68 16 15 C 0.08 2.09 5.49 -17.47 -0.10 1.99 16 16 N -0.88 -24.49 13.22 55.48 0.73 -23.76 16 17 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C -0.06 -0.94 8.97 -39.42 -0.35 -1.29 16 22 C -0.19 -2.33 9.03 -39.46 -0.36 -2.68 16 23 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.21 2.60 8.06 -52.49 -0.42 2.18 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.14 2.28 7.65 -52.49 -0.40 1.87 16 31 H 0.14 1.37 6.29 -52.49 -0.33 1.04 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -32.98 293.42 -7.33 -40.32 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -2.72 Total: -0.67 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.87 Total: -12.24 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.26 Total: -45.92 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.21 Total: -3.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.20 Total: 1.38 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.98 -7.33 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006621918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.597 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds