Wall clock time and date at job start Mon Mar 30 2020 01:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35954 * 116.99920 * 2 1 4 4 C 1.38736 * 119.98699 * 179.97438 * 3 2 1 5 5 C 1.38073 * 120.00688 * 179.97438 * 4 3 2 6 6 C 1.38825 * 119.99143 * 359.97438 * 5 4 3 7 7 N 1.40332 * 120.00924 * 179.97438 * 6 5 4 8 8 C 1.36661 * 127.14889 * 310.01082 * 7 6 5 9 9 N 1.30526 * 107.35032 * 179.75853 * 8 7 6 10 10 N 1.28519 * 110.11647 * 0.25156 * 9 8 7 11 11 C 1.31440 * 109.84783 * 359.97438 * 10 9 8 12 12 S 1.76197 * 126.50564 * 180.02562 * 11 10 9 13 13 C 1.76198 * 100.00116 * 359.97438 * 12 11 10 14 14 H 1.07996 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.38667 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31644 * 120.00266 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00195 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46749 * 59.99651 * 17 15 13 19 19 H 1.48497 * 109.47197 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46939 * 300.00131 * 17 15 13 21 21 C 1.38822 * 119.97914 * 0.24282 * 6 5 4 22 22 C 1.38076 * 119.98952 * 359.51790 * 21 6 5 23 23 H 1.08995 * 109.46559 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46741 * 300.00286 * 1 2 3 25 25 H 1.09001 * 109.46811 * 59.99856 * 1 2 3 26 26 H 1.07998 * 119.99959 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.00544 * 180.02562 * 5 4 3 28 28 H 1.08002 * 126.32833 * 0.03380 * 8 7 6 29 29 H 0.96999 * 120.00195 * 180.02562 * 16 15 13 30 30 H 1.07997 * 120.00702 * 179.73107 * 21 6 5 31 31 H 1.07996 * 119.99631 * 180.20881 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0590 2.5137 0.0000 6 6 3.3031 3.6781 -0.0016 7 7 3.9402 4.9285 -0.0016 8 6 4.9379 5.3464 0.8336 9 7 5.2462 6.5676 0.4913 10 7 4.5130 6.9492 -0.4929 11 6 3.6895 5.9841 -0.8364 12 16 2.4946 6.0367 -2.1302 13 6 2.7681 7.6695 -2.7332 14 1 3.5213 8.2945 -2.2768 15 6 2.0154 8.1523 -3.7930 16 7 1.0969 7.3906 -4.3490 17 14 2.3049 9.8837 -4.4320 18 1 3.7080 10.0099 -4.9014 19 1 1.3793 10.1559 -5.5608 20 1 2.0579 10.8613 -3.3418 21 6 1.9168 3.6052 0.0024 22 6 1.2904 2.3748 -0.0020 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0197 0.3778 0.0014 27 1 5.1375 2.5700 0.0000 28 1 5.3910 4.7708 1.6273 29 1 0.5707 7.7282 -5.0906 30 1 1.3283 4.5108 0.0055 31 1 0.2119 2.3179 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006621918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:11 Heat of formation + Delta-G solvation = 48.997839 kcal Electronic energy + Delta-G solvation = -18161.989239 eV Core-core repulsion = 15149.875036 eV Total energy + Delta-G solvation = -3012.114203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.81116 -41.12797 -38.77328 -35.30003 -34.72849 -32.37375 -31.48390 -30.25788 -28.09802 -27.78864 -24.84118 -24.15853 -22.89401 -22.45052 -20.17183 -19.36143 -18.83495 -17.57817 -17.14197 -16.96298 -16.67436 -16.51824 -16.01369 -15.59608 -14.94162 -14.73805 -14.53779 -14.15638 -13.85657 -13.38984 -13.02485 -13.00405 -12.88826 -12.47913 -12.35829 -12.06912 -11.94779 -11.61985 -11.59741 -11.33962 -10.83407 -10.80522 -10.16841 -9.20141 -8.73443 -8.52673 -6.31529 -0.07473 0.18986 0.72152 0.90776 1.36472 1.41550 1.49857 1.78383 1.88572 2.13218 2.31164 2.53927 2.87884 3.03071 3.67703 3.73120 3.78993 4.03455 4.19586 4.31300 4.41683 4.44155 4.48993 4.62350 4.78454 4.81029 4.94105 5.04261 5.18133 5.35493 5.45194 5.47381 6.09635 6.20585 6.34155 6.94800 7.73641 8.56380 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.005266 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.876558 B = 5315.463870 C = 6483.863115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.135 3.865 4 C -0.132 4.132 5 C -0.064 4.064 6 C 0.057 3.943 7 N -0.424 5.424 8 C 0.157 3.843 9 N -0.334 5.334 10 N -0.348 5.348 11 C 0.155 3.845 12 S 0.124 5.876 13 C -0.565 4.565 14 H 0.084 0.916 15 C 0.035 3.965 16 N -0.903 5.903 17 Si 0.993 3.007 18 H -0.269 1.269 19 H -0.264 1.264 20 H -0.268 1.268 21 C -0.076 4.076 22 C -0.187 4.187 23 H 0.124 0.876 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.267 0.733 29 H 0.281 0.719 30 H 0.119 0.881 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -17.116 9.197 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.089 3.911 4 C -0.151 4.151 5 C -0.084 4.084 6 C -0.034 4.034 7 N -0.116 5.116 8 C -0.133 4.133 9 N -0.171 5.171 10 N -0.191 5.191 11 C -0.218 4.218 12 S 0.356 5.644 13 C -0.713 4.713 14 H 0.102 0.898 15 C -0.172 4.172 16 N -0.539 5.539 17 Si 0.815 3.185 18 H -0.194 1.194 19 H -0.188 1.188 20 H -0.193 1.193 21 C -0.096 4.096 22 C -0.206 4.206 23 H 0.142 0.858 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.283 0.717 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.785 -16.735 8.663 18.929 hybrid contribution 0.099 1.172 -0.007 1.176 sum -1.686 -15.563 8.655 17.888 Atomic orbital electron populations 1.23423 0.76266 1.05941 1.02427 1.86082 1.23554 1.25792 1.88058 1.19241 0.92765 0.84507 0.94586 1.20535 0.91488 0.98363 1.04740 1.21027 1.00967 0.89207 0.97202 1.17841 0.92205 0.82484 1.10834 1.44055 1.30266 1.11361 1.25920 1.27440 0.92155 0.94493 0.99212 1.73833 1.21799 1.11442 1.10047 1.74666 1.08187 1.24498 1.11793 1.28285 1.04974 0.87226 1.01339 1.83166 1.34675 1.20811 1.25788 1.23331 1.26277 1.00041 1.21661 0.89792 1.25901 0.93316 1.03284 0.94690 1.69998 1.21542 1.38556 1.23810 0.85073 0.78740 0.76635 0.78059 1.19353 1.18808 1.19266 1.20960 0.92604 0.99048 0.97028 1.21279 1.01667 0.90455 1.07236 0.85751 0.91364 0.92026 0.81480 0.82554 0.71730 0.90962 0.86304 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -5.89 10.50 -93.03 -0.98 -6.87 16 3 C 0.14 2.87 6.69 22.51 0.15 3.02 16 4 C -0.13 -2.60 9.98 22.35 0.22 -2.38 16 5 C -0.06 -1.48 9.71 22.37 0.22 -1.26 16 6 C 0.06 1.76 5.93 38.06 0.23 1.99 16 7 N -0.42 -16.05 2.91 -349.46 -1.02 -17.07 16 8 C 0.16 5.37 12.52 179.73 2.25 7.62 16 9 N -0.33 -14.94 12.18 -59.26 -0.72 -15.66 16 10 N -0.35 -18.20 11.04 -56.55 -0.62 -18.83 16 11 C 0.15 7.50 7.90 179.39 1.42 8.92 16 12 S 0.12 6.50 20.47 -56.49 -1.16 5.34 16 13 C -0.56 -33.15 9.37 67.92 0.64 -32.51 16 14 H 0.08 5.15 6.93 -2.91 -0.02 5.13 16 15 C 0.03 1.93 5.49 84.82 0.47 2.39 16 16 N -0.90 -51.20 13.22 21.62 0.29 -50.91 16 17 Si 0.99 44.39 29.55 68.60 2.03 46.41 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C -0.08 -2.29 8.97 22.37 0.20 -2.09 16 22 C -0.19 -4.36 9.03 22.35 0.20 -4.15 16 23 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 25 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.27 5.50 8.06 -2.91 -0.02 5.48 16 29 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.12 4.04 7.65 -2.91 -0.02 4.02 16 31 H 0.16 2.88 6.29 -2.91 -0.02 2.86 16 Total: -1.00 -74.58 293.42 6.08 -68.50 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.16 Total: 6.27 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 7.10 Total: -17.20 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -2.08 Total: -102.47 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.98 Total: -6.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.16 Total: 5.34 kcal Total: -74.58 6.08 -68.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006621918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.502 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds