Wall clock time and date at job start Mon Mar 30 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00277 * 2 1 4 4 N 1.46503 * 109.46922 * 125.00250 * 3 2 1 5 5 C 1.36884 * 127.17453 * 89.97941 * 4 3 2 6 6 S 1.76204 * 126.36790 * 359.96190 * 5 4 3 7 7 C 1.76198 * 99.99829 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 6 5 9 9 C 1.38545 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31715 * 120.00023 * 359.72870 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47273 * 59.99875 * 11 9 7 13 13 H 1.48495 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47290 * 300.00071 * 11 9 7 15 15 N 1.31585 * 107.26268 * 180.22763 * 5 4 3 16 16 N 1.28510 * 110.10667 * 359.61256 * 15 5 4 17 17 C 1.31802 * 109.93105 * 0.39475 * 16 15 5 18 18 C 1.46958 * 126.47660 * 179.75697 * 17 16 15 19 19 C 1.36412 * 125.97151 * 344.72478 * 18 17 16 20 20 C 1.40716 * 106.71644 * 179.85052 * 19 18 17 21 21 C 1.34869 * 107.09419 * 0.40410 * 20 19 18 22 22 O 1.34294 * 108.73962 * 359.74842 * 21 20 19 23 23 H 1.08007 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00369 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00173 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47266 * 5.00842 * 3 2 1 27 27 H 1.08996 * 109.47630 * 244.99897 * 3 2 1 28 28 H 0.97000 * 119.99652 * 180.02562 * 10 9 7 29 29 H 1.07996 * 126.63801 * 359.97438 * 19 18 17 30 30 H 1.08005 * 126.45060 * 180.17682 * 20 19 18 31 31 H 1.08003 * 125.63062 * 179.72885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.2926 0.8997 1.1447 6 16 5.1739 0.1970 -0.2097 7 6 6.7322 -0.0962 0.5584 8 1 6.8809 0.1655 1.5956 9 6 7.7669 -0.6627 -0.1682 10 7 7.5840 -0.9868 -1.4317 11 14 9.4188 -0.9743 0.6462 12 1 9.2383 -1.8990 1.7940 13 1 10.3493 -1.5824 -0.3384 14 1 9.9824 0.3115 1.1305 15 7 4.7589 1.1014 2.3585 16 7 3.8517 1.6329 3.0975 17 6 2.7442 1.7963 2.4019 18 6 1.4814 2.3667 2.8912 19 6 1.1401 2.5540 4.1986 20 6 -0.1460 3.1249 4.2034 21 6 -0.5292 3.2498 2.9163 22 8 0.4555 2.7912 2.1266 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0897 27 1 2.6213 1.4026 -0.9313 28 1 8.3084 -1.3838 -1.9403 29 1 1.7415 2.3128 5.0626 30 1 -0.7199 3.4064 5.0740 31 1 -1.4723 3.6519 2.5768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029547383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:28 Heat of formation + Delta-G solvation = 109.716797 kcal Electronic energy + Delta-G solvation = -18391.734333 eV Core-core repulsion = 15382.253102 eV Total energy + Delta-G solvation = -3009.481231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.62025 -41.83367 -35.90605 -33.12771 -32.73486 -32.45066 -31.37098 -28.25920 -26.60859 -25.71911 -22.85437 -22.47055 -21.17075 -20.30259 -20.04966 -18.09395 -17.81201 -16.42300 -16.27821 -15.46977 -15.35339 -14.99241 -14.95740 -14.52130 -13.55080 -13.22262 -12.96416 -12.83817 -12.59439 -12.24539 -11.54452 -11.47243 -11.14611 -11.13230 -10.80630 -10.27487 -10.19155 -10.00270 -9.89814 -9.75423 -9.55309 -9.20011 -8.94307 -8.19459 -6.79581 -6.51041 -4.26309 1.19854 1.95933 2.29331 2.46820 2.67685 2.84647 3.21715 3.22025 3.27102 3.34744 3.59555 3.97702 4.54813 4.74277 4.82841 4.93347 4.94587 4.97413 5.06338 5.24877 5.50004 5.61847 5.74204 5.80283 5.86913 6.05576 6.20444 6.45526 6.51238 6.52951 6.63179 7.04254 7.20983 7.53488 8.32684 9.01004 9.28105 10.56995 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.029002 B = 0.004909 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.222478 B = 5702.367562 C = 6490.175779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.169 4.169 3 C 0.139 3.861 4 N -0.469 5.469 5 C 0.179 3.821 6 S 0.149 5.851 7 C -0.536 4.536 8 H 0.106 0.894 9 C 0.077 3.923 10 N -0.878 5.878 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.300 5.300 16 N -0.251 5.251 17 C 0.200 3.800 18 C 0.078 3.922 19 C -0.164 4.164 20 C -0.208 4.208 21 C -0.040 4.040 22 O -0.176 6.176 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.275 0.725 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 5.278 2.742 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.016 3.984 4 N -0.166 5.166 5 C -0.190 4.190 6 S 0.382 5.618 7 C -0.684 4.684 8 H 0.124 0.876 9 C -0.133 4.133 10 N -0.513 5.513 11 Si 0.759 3.241 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.194 1.194 15 N -0.147 5.147 16 N -0.095 5.095 17 C -0.066 4.066 18 C 0.026 3.974 19 C -0.186 4.186 20 C -0.227 4.227 21 C -0.109 4.109 22 O -0.071 6.071 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.574 4.954 2.207 16.491 hybrid contribution 0.308 0.051 0.720 0.785 sum -15.266 5.005 2.927 16.330 Atomic orbital electron populations 1.23856 0.95443 1.02127 0.99244 1.23180 0.96279 0.98534 1.00825 1.20952 0.91756 0.97265 0.88427 1.46420 1.10812 1.49104 1.10309 1.28512 0.85136 1.02231 1.03126 1.83465 1.08469 1.67644 1.02202 1.23177 0.95230 1.47919 1.02090 0.87613 1.25060 0.99670 0.93700 0.94829 1.69967 1.34050 1.39612 1.07679 0.85948 0.80058 0.79196 0.78879 1.19369 1.20762 1.19371 1.74837 1.21188 1.19049 0.99580 1.74399 0.95888 1.13833 1.25393 1.21027 0.94062 1.07936 0.83530 1.18447 0.86169 1.04083 0.88736 1.21761 0.96835 1.04146 0.95908 1.21741 0.97110 1.06136 0.97688 1.24095 0.93346 1.03886 0.89566 1.84043 1.23252 1.62435 1.37382 0.88335 0.87867 0.86107 0.88375 0.87441 0.91503 0.82521 0.83032 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 14.32 29.02 0.42 -1.46 16 2 C -0.17 -2.34 9.85 -36.02 -0.35 -2.69 16 3 C 0.14 2.10 6.26 -5.19 -0.03 2.07 16 4 N -0.47 -9.22 2.83 -115.42 -0.33 -9.55 16 5 C 0.18 4.19 8.06 -87.76 -0.71 3.48 16 6 S 0.15 3.66 21.39 -107.50 -2.30 1.36 16 7 C -0.54 -14.84 9.36 30.85 0.29 -14.55 16 8 H 0.11 3.02 6.92 -52.49 -0.36 2.66 16 9 C 0.08 2.06 5.49 -17.49 -0.10 1.97 16 10 N -0.88 -24.16 13.22 55.48 0.73 -23.43 16 11 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 N -0.30 -7.58 11.02 30.80 0.34 -7.24 16 16 N -0.25 -5.77 12.23 32.47 0.40 -5.37 16 17 C 0.20 3.99 7.89 -153.72 -1.21 2.78 16 18 C 0.08 1.27 7.06 -36.71 -0.26 1.01 16 19 C -0.16 -2.32 10.85 -39.30 -0.43 -2.74 16 20 C -0.21 -2.22 10.88 -39.84 -0.43 -2.66 16 21 C -0.04 -0.40 12.08 29.54 0.36 -0.04 16 22 O -0.18 -2.37 9.02 4.35 0.04 -2.33 16 23 H 0.10 0.96 7.84 -52.48 -0.41 0.55 16 24 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 25 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.10 1.30 6.22 -51.93 -0.32 0.98 16 27 H 0.11 1.57 7.86 -51.93 -0.41 1.16 16 28 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 29 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.21 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -31.76 300.12 -6.83 -38.59 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.76 Total: 0.19 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.46 Total: -12.83 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 1.14 Total: -45.59 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.30 Total: 1.36 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.76 -6.83 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029547383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.307 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds