Wall clock time and date at job start Mon Mar 30 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00277 * 2 1 4 4 N 1.46503 * 109.46922 * 125.00250 * 3 2 1 5 5 C 1.36884 * 127.17453 * 89.97941 * 4 3 2 6 6 S 1.76204 * 126.36790 * 359.96190 * 5 4 3 7 7 C 1.76198 * 99.99829 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 6 5 9 9 C 1.38545 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31715 * 120.00023 * 359.72870 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47273 * 59.99875 * 11 9 7 13 13 H 1.48495 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47290 * 300.00071 * 11 9 7 15 15 N 1.31585 * 107.26268 * 180.22763 * 5 4 3 16 16 N 1.28510 * 110.10667 * 359.61256 * 15 5 4 17 17 C 1.31802 * 109.93105 * 0.39475 * 16 15 5 18 18 C 1.46958 * 126.47660 * 179.75697 * 17 16 15 19 19 C 1.36412 * 125.97151 * 344.72478 * 18 17 16 20 20 C 1.40716 * 106.71644 * 179.85052 * 19 18 17 21 21 C 1.34869 * 107.09419 * 0.40410 * 20 19 18 22 22 O 1.34294 * 108.73962 * 359.74842 * 21 20 19 23 23 H 1.08007 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00369 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00173 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47266 * 5.00842 * 3 2 1 27 27 H 1.08996 * 109.47630 * 244.99897 * 3 2 1 28 28 H 0.97000 * 119.99652 * 180.02562 * 10 9 7 29 29 H 1.07996 * 126.63801 * 359.97438 * 19 18 17 30 30 H 1.08005 * 126.45060 * 180.17682 * 20 19 18 31 31 H 1.08003 * 125.63062 * 179.72885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.2926 0.8997 1.1447 6 16 5.1739 0.1970 -0.2097 7 6 6.7322 -0.0962 0.5584 8 1 6.8809 0.1655 1.5956 9 6 7.7669 -0.6627 -0.1682 10 7 7.5840 -0.9868 -1.4317 11 14 9.4188 -0.9743 0.6462 12 1 9.2383 -1.8990 1.7940 13 1 10.3493 -1.5824 -0.3384 14 1 9.9824 0.3115 1.1305 15 7 4.7589 1.1014 2.3585 16 7 3.8517 1.6329 3.0975 17 6 2.7442 1.7963 2.4019 18 6 1.4814 2.3667 2.8912 19 6 1.1401 2.5540 4.1986 20 6 -0.1460 3.1249 4.2034 21 6 -0.5292 3.2498 2.9163 22 8 0.4555 2.7912 2.1266 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0897 27 1 2.6213 1.4026 -0.9313 28 1 8.3084 -1.3838 -1.9403 29 1 1.7415 2.3128 5.0626 30 1 -0.7199 3.4064 5.0740 31 1 -1.4723 3.6519 2.5768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029547383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:28 Heat of formation + Delta-G solvation = 90.914573 kcal Electronic energy + Delta-G solvation = -18392.549658 eV Core-core repulsion = 15382.253102 eV Total energy + Delta-G solvation = -3010.296557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.86315 -43.24700 -37.20783 -34.76346 -34.17113 -33.78090 -32.71893 -29.60473 -27.88337 -27.74977 -24.17814 -23.95883 -22.29103 -21.53107 -21.17078 -19.92939 -19.07020 -17.77516 -17.52639 -17.05271 -16.93445 -16.69525 -16.19167 -15.76885 -14.96983 -14.68532 -14.02779 -13.88903 -13.53043 -13.48241 -13.40620 -13.01067 -13.00763 -12.59769 -12.53539 -12.03960 -11.81356 -11.70535 -11.28164 -11.10492 -10.90896 -10.84143 -10.59011 -9.50384 -8.63656 -8.53938 -6.33512 -0.05604 0.55439 1.00957 1.10905 1.36789 1.41858 1.50168 1.55965 1.60042 1.90346 2.06972 2.11819 2.87147 2.97841 3.43894 3.59374 3.75153 4.02723 4.05194 4.13533 4.27624 4.42879 4.49160 4.80446 4.90548 4.92739 5.00398 5.03668 5.44827 5.53109 5.54089 5.55119 5.76500 6.03292 6.19617 6.93802 7.58464 8.55154 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.029002 B = 0.004909 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.222478 B = 5702.367562 C = 6490.175779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.206 4.206 3 C 0.134 3.866 4 N -0.462 5.462 5 C 0.164 3.836 6 S 0.135 5.865 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.035 3.965 10 N -0.903 5.903 11 Si 0.995 3.005 12 H -0.268 1.268 13 H -0.264 1.264 14 H -0.268 1.268 15 N -0.339 5.339 16 N -0.298 5.298 17 C 0.230 3.770 18 C 0.022 3.978 19 C -0.149 4.149 20 C -0.217 4.217 21 C -0.003 4.003 22 O -0.179 6.179 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.282 0.718 29 H 0.151 0.849 30 H 0.186 0.814 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 6.433 3.214 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.225 4.225 3 C 0.013 3.987 4 N -0.158 5.158 5 C -0.209 4.209 6 S 0.367 5.633 7 C -0.712 4.712 8 H 0.104 0.896 9 C -0.171 4.171 10 N -0.539 5.539 11 Si 0.816 3.184 12 H -0.193 1.193 13 H -0.188 1.188 14 H -0.193 1.193 15 N -0.185 5.185 16 N -0.140 5.140 17 C -0.037 4.037 18 C -0.029 4.029 19 C -0.172 4.172 20 C -0.236 4.236 21 C -0.071 4.071 22 O -0.075 6.075 23 H 0.140 0.860 24 H 0.140 0.860 25 H 0.116 0.884 26 H 0.141 0.859 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.204 0.796 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -19.033 6.116 2.684 20.171 hybrid contribution 0.926 -0.147 0.708 1.175 sum -18.107 5.970 3.392 19.365 Atomic orbital electron populations 1.24170 0.94161 1.04109 0.94282 1.22952 0.97291 0.96870 1.05362 1.21290 0.91460 0.99108 0.86809 1.46732 1.10071 1.47550 1.11415 1.28177 0.86774 1.03563 1.02363 1.83085 1.07640 1.69553 1.03063 1.23300 0.97251 1.48982 1.01691 0.89596 1.25888 1.02792 0.93090 0.95357 1.70023 1.35255 1.39968 1.08611 0.85052 0.76095 0.79019 0.78222 1.19309 1.18820 1.19281 1.74693 1.23058 1.20036 1.00669 1.74281 0.96993 1.16608 1.26152 1.21668 0.94634 1.04505 0.82919 1.18117 0.86499 1.08697 0.89609 1.22081 0.98191 1.01976 0.94955 1.22126 0.95695 1.06204 0.99586 1.25287 0.93179 0.99583 0.89074 1.84033 1.23152 1.62558 1.37731 0.85994 0.85960 0.88360 0.85939 0.87694 0.90906 0.83075 0.79636 0.72436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 14.32 67.79 0.97 -1.48 16 2 C -0.21 -5.55 9.85 25.65 0.25 -5.29 16 3 C 0.13 4.02 6.26 85.63 0.54 4.56 16 4 N -0.46 -18.67 2.83 -519.07 -1.47 -20.14 16 5 C 0.16 8.08 8.06 179.35 1.45 9.53 16 6 S 0.14 7.01 21.39 -56.49 -1.21 5.81 16 7 C -0.56 -32.87 9.36 67.89 0.64 -32.24 16 8 H 0.09 5.23 6.92 -2.91 -0.02 5.21 16 9 C 0.04 1.96 5.49 84.78 0.47 2.42 16 10 N -0.90 -50.88 13.22 21.60 0.29 -50.60 16 11 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 N -0.34 -18.20 11.02 -56.47 -0.62 -18.82 16 16 N -0.30 -14.34 12.23 -51.20 -0.63 -14.96 16 17 C 0.23 9.33 7.89 135.80 1.07 10.41 16 18 C 0.02 0.70 7.06 24.13 0.17 0.87 16 19 C -0.15 -3.89 10.85 22.45 0.24 -3.64 16 20 C -0.22 -3.59 10.88 22.10 0.24 -3.35 16 21 C 0.00 -0.04 12.08 67.05 0.81 0.77 16 22 O -0.18 -4.13 9.02 -7.35 -0.07 -4.19 16 23 H 0.12 1.76 7.84 -2.91 -0.02 1.74 16 24 H 0.12 1.89 8.06 -2.91 -0.02 1.86 16 25 H 0.10 3.08 8.06 -2.91 -0.02 3.06 16 26 H 0.12 3.01 6.22 -2.39 -0.01 2.99 16 27 H 0.10 3.15 7.86 -2.39 -0.02 3.13 16 28 H 0.28 14.66 8.32 -92.71 -0.77 13.89 16 29 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.26 0.63 8.06 -2.91 -0.02 0.60 16 Total: -1.00 -74.48 300.12 6.32 -68.16 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.16 Total: 5.94 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 6.84 Total: -17.46 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -2.43 Total: -104.52 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.07 Total: -4.19 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.21 Total: 5.81 kcal Total: -74.48 6.32 -68.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029547383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.078 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds