Wall clock time and date at job start Mon Mar 30 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 F 1.39900 * 109.47003 * 59.99932 * 18 17 15 20 20 F 1.39899 * 109.47456 * 180.02562 * 18 17 15 21 21 F 1.39903 * 109.46794 * 300.00303 * 18 17 15 22 22 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 23 23 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 25 25 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 26 26 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 27 27 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 28 28 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47215 * 300.01034 * 17 15 14 30 30 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 9 7.0655 -8.8445 0.8008 20 9 5.6734 -10.5225 1.4842 21 9 5.2962 -9.4644 -0.5049 22 7 3.6647 -3.5705 0.9089 23 1 -0.4850 0.8400 0.0004 24 1 3.8711 -0.6780 -0.9023 25 1 3.8785 -0.6824 0.8776 26 1 5.2837 -2.6015 -1.7660 27 1 5.6844 -5.1081 -1.1009 28 1 3.6742 -5.9850 2.0407 29 1 5.2048 -8.1442 2.5484 30 1 3.8259 -8.6269 1.5316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:52 Heat of formation + Delta-G solvation = -102.235411 kcal Electronic energy + Delta-G solvation = -20836.511802 eV Core-core repulsion = 16833.230022 eV Total energy + Delta-G solvation = -4003.281780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.26766 -47.81437 -47.67003 -40.89721 -39.49579 -35.02931 -33.43002 -32.33942 -31.11091 -29.50979 -27.27177 -24.71707 -22.74211 -21.79191 -20.39623 -19.89041 -18.78154 -18.73705 -17.76302 -17.07450 -16.82270 -16.47289 -15.80893 -15.37081 -14.68426 -14.64065 -14.42127 -14.12827 -14.08082 -13.86110 -13.83093 -13.75908 -13.14816 -12.93983 -12.62739 -12.45917 -12.24745 -12.13280 -11.24725 -10.94218 -10.62428 -10.28621 -10.07493 -9.89085 -9.59589 -8.81066 -8.31687 -7.66126 -6.27803 -4.30698 1.99458 2.15269 2.65811 2.72894 3.13043 3.17998 3.20850 3.41574 3.50266 3.50471 3.80066 3.97725 4.18945 4.45583 4.69096 4.72646 4.99866 5.33955 5.58613 6.01528 6.28448 6.34257 6.41829 6.57487 7.14393 7.19738 7.38727 7.72141 7.91264 8.27553 8.44162 8.81043 9.26811 10.84799 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.051120 B = 0.003314 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.602669 B = 8446.928393 C = 8675.738255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.256 3.744 14 N -0.622 5.622 15 C 0.523 3.477 16 O -0.498 6.498 17 C -0.192 4.192 18 C 0.474 3.526 19 F -0.172 7.172 20 F -0.183 7.183 21 F -0.171 7.171 22 N -0.293 5.293 23 H 0.269 0.731 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.171 0.829 27 H 0.163 0.837 28 H 0.415 0.585 29 H 0.142 0.858 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 -15.597 3.676 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.003 3.997 14 N -0.270 5.270 15 C 0.307 3.693 16 O -0.371 6.371 17 C -0.233 4.233 18 C 0.419 3.581 19 F -0.153 7.153 20 F -0.164 7.164 21 F -0.153 7.153 22 N -0.124 5.124 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.188 0.812 27 H 0.180 0.820 28 H 0.251 0.749 29 H 0.160 0.840 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.385 -14.753 3.765 18.430 hybrid contribution 0.533 0.401 -0.175 0.690 sum 10.918 -14.352 3.589 18.386 Atomic orbital electron populations 1.69869 1.06166 1.27367 1.48984 1.24832 0.94878 0.98823 0.94191 0.86885 0.80235 0.83779 0.79022 1.19681 1.18944 1.20552 1.21096 0.87728 0.95733 1.52904 0.89644 1.20087 0.97514 0.72837 0.98317 1.48652 1.32654 1.10186 1.18334 1.22578 0.95857 0.94638 0.96493 1.21549 1.11464 0.96902 1.01419 1.19035 0.99396 0.86410 0.94850 1.42192 1.47208 1.07277 1.30323 1.19678 0.80305 0.84271 0.85070 1.90775 1.38553 1.83108 1.24660 1.22912 1.04385 0.92898 1.03135 1.19632 0.79924 0.80692 0.77822 1.93236 1.37100 1.88668 1.96343 1.93203 1.96334 1.46678 1.80210 1.93244 1.88909 1.95697 1.37422 1.77396 1.23404 0.95456 1.16108 0.92122 0.92790 0.94370 0.81220 0.82006 0.74926 0.83960 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.82 9.79 -34.44 -0.34 -15.16 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 C 0.23 5.33 5.33 -5.20 -0.03 5.30 16 10 N -0.32 -6.92 3.67 -62.56 -0.23 -7.14 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.23 9.61 -39.83 -0.38 -5.61 16 13 C 0.26 4.78 8.11 -154.39 -1.25 3.53 16 14 N -0.62 -8.33 5.45 -11.13 -0.06 -8.39 16 15 C 0.52 6.39 7.57 -10.99 -0.08 6.31 16 16 O -0.50 -7.95 11.96 5.54 0.07 -7.88 16 17 C -0.19 -1.35 5.75 -27.89 -0.16 -1.51 16 18 C 0.47 4.59 2.89 37.16 0.11 4.70 16 19 F -0.17 -2.02 16.40 2.25 0.04 -1.98 16 20 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 21 F -0.17 -2.06 16.40 2.25 0.04 -2.02 16 22 N -0.29 -6.39 12.42 31.44 0.39 -6.00 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 25 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 26 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.16 2.91 5.92 -52.49 -0.31 2.60 16 28 H 0.41 4.16 8.82 -40.82 -0.36 3.80 16 29 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 0.58 8.14 -51.92 -0.42 0.15 16 LS Contribution 281.88 15.07 4.25 4.25 Total: -1.00 -34.10 281.88 -4.09 -38.19 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.29 Total: 2.48 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.43 Total: 0.37 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.87 Total: -46.93 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.11 Total: -5.57 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.10 -4.09 -38.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.045 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds