Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 F 1.39900 * 109.47003 * 59.99932 * 18 17 15 20 20 F 1.39899 * 109.47456 * 180.02562 * 18 17 15 21 21 F 1.39903 * 109.46794 * 300.00303 * 18 17 15 22 22 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 23 23 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 25 25 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 26 26 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 27 27 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 28 28 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47215 * 300.01034 * 17 15 14 30 30 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 9 7.0655 -8.8445 0.8008 20 9 5.6734 -10.5225 1.4842 21 9 5.2962 -9.4644 -0.5049 22 7 3.6647 -3.5705 0.9089 23 1 -0.4850 0.8400 0.0004 24 1 3.8711 -0.6780 -0.9023 25 1 3.8785 -0.6824 0.8776 26 1 5.2837 -2.6015 -1.7660 27 1 5.6844 -5.1081 -1.1009 28 1 3.6742 -5.9850 2.0407 29 1 5.2048 -8.1442 2.5484 30 1 3.8259 -8.6269 1.5316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = -126.725314 kcal Electronic energy + Delta-G solvation = -20837.573764 eV Core-core repulsion = 16833.230022 eV Total energy + Delta-G solvation = -4004.343742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.05016 -48.57055 -48.51594 -42.27219 -40.67430 -36.33587 -35.24006 -33.52034 -32.49788 -31.00081 -29.00570 -25.74388 -24.36484 -22.95947 -21.84735 -21.12892 -19.64633 -19.52304 -19.11645 -18.66900 -17.99186 -17.66730 -16.90098 -16.82337 -16.19271 -15.56547 -15.46374 -15.24760 -15.03984 -14.92368 -14.77908 -14.68684 -14.63961 -14.41980 -13.93281 -13.85781 -13.48161 -13.00255 -12.96285 -12.65544 -12.20034 -11.82668 -11.69995 -11.49059 -11.10148 -10.87355 -9.80251 -9.15301 -8.37322 -6.47776 0.83749 1.13146 1.36419 1.37884 1.40571 1.49305 1.78202 2.15674 2.22899 2.29219 2.71906 2.95488 3.07837 3.09237 3.63110 3.93785 4.16685 4.20360 4.27354 4.59575 4.72577 4.85542 4.88532 5.10395 5.24550 5.84313 5.99140 6.12574 6.39155 6.57926 6.84384 7.03397 7.15384 8.79575 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.051120 B = 0.003314 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.602669 B = 8446.928393 C = 8675.738255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.230 1.230 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.060 3.940 12 C -0.294 4.294 13 C 0.263 3.737 14 N -0.616 5.616 15 C 0.522 3.478 16 O -0.537 6.537 17 C -0.175 4.175 18 C 0.469 3.531 19 F -0.188 7.188 20 F -0.176 7.176 21 F -0.189 7.189 22 N -0.343 5.343 23 H 0.272 0.728 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.209 0.791 27 H 0.168 0.832 28 H 0.430 0.570 29 H 0.185 0.815 30 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -15.493 4.130 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.153 1.153 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.088 4.088 12 C -0.325 4.325 13 C 0.009 3.991 14 N -0.266 5.266 15 C 0.309 3.691 16 O -0.412 6.412 17 C -0.215 4.215 18 C 0.414 3.586 19 F -0.169 7.169 20 F -0.157 7.157 21 F -0.171 7.171 22 N -0.173 5.173 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.226 0.774 27 H 0.185 0.815 28 H 0.269 0.731 29 H 0.202 0.798 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.117 -14.703 4.239 19.519 hybrid contribution -0.015 0.149 -0.321 0.354 sum 12.102 -14.555 3.918 19.330 Atomic orbital electron populations 1.70045 1.08568 1.28808 1.50638 1.25907 0.95753 1.03504 0.93225 0.85628 0.79883 0.77297 0.79630 1.18997 1.15265 1.20469 1.21234 0.90494 0.93757 1.53059 0.95417 1.19908 0.94157 0.74336 0.99706 1.48523 1.34277 1.10033 1.19685 1.23244 0.94360 0.94762 0.96385 1.21762 1.11854 0.97198 1.01710 1.19438 0.97667 0.87303 0.94728 1.42343 1.47759 1.05866 1.30642 1.20583 0.78715 0.85259 0.84587 1.90755 1.39998 1.83874 1.26557 1.22995 1.06198 0.88571 1.03691 1.20011 0.79654 0.81527 0.77383 1.93208 1.38455 1.88872 1.96372 1.93218 1.96259 1.46366 1.79859 1.93212 1.89009 1.95857 1.38998 1.77311 1.25610 0.96686 1.17730 0.91882 0.89991 0.93638 0.77446 0.81484 0.73064 0.79772 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 2 C 0.02 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.95 39.95 27.47 68.60 1.88 41.84 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.23 -8.28 6.54 99.48 0.65 -7.63 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.55 -30.98 9.79 25.60 0.25 -30.73 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.24 10.75 5.33 85.63 0.46 11.21 16 10 N -0.34 -14.87 3.67 -351.85 -1.29 -16.16 16 11 C 0.06 2.16 11.43 83.52 0.96 3.11 16 12 C -0.29 -10.68 9.61 22.11 0.21 -10.47 16 13 C 0.26 9.72 8.11 133.33 1.08 10.80 16 14 N -0.62 -15.64 5.45 -307.52 -1.68 -17.31 16 15 C 0.52 11.76 7.57 87.66 0.66 12.43 16 16 O -0.54 -16.62 11.96 -3.08 -0.04 -16.65 16 17 C -0.17 -1.85 5.75 29.84 0.17 -1.68 16 18 C 0.47 8.09 2.89 71.98 0.21 8.30 16 19 F -0.19 -4.16 16.40 44.97 0.74 -3.42 16 20 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 21 F -0.19 -4.34 16.40 44.97 0.74 -3.61 16 22 N -0.34 -15.12 12.42 -54.45 -0.68 -15.80 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.08 3.22 7.12 -2.39 -0.02 3.20 16 25 H 0.05 1.97 7.57 -2.39 -0.02 1.96 16 26 H 0.21 5.47 8.06 -2.91 -0.02 5.45 16 27 H 0.17 5.90 5.92 -2.91 -0.02 5.88 16 28 H 0.43 7.88 8.82 -92.71 -0.82 7.06 16 29 H 0.18 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.18 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -78.90 281.88 5.56 -73.34 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.34 Total: 12.35 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.46 Total: 4.27 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.34 Total: -106.24 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.04 Total: -16.65 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 2.25 Total: -8.91 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.84 kcal Total: -78.90 5.56 -73.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.381 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds