Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99695 * 2 1 4 4 O 1.20831 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99956 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.49843 * 300.05444 * 5 3 2 7 7 C 1.53040 * 109.50327 * 60.15843 * 5 3 2 8 8 C 1.53037 * 109.54181 * 181.31898 * 7 5 3 9 9 C 1.53196 * 109.31040 * 298.63376 * 8 7 5 10 10 N 1.46920 * 108.77435 * 54.63686 * 9 8 7 11 11 S 1.65606 * 120.63323 * 126.37256 * 10 9 8 12 12 O 1.42097 * 106.40018 * 203.53618 * 11 10 9 13 13 O 1.42106 * 106.39822 * 336.45333 * 11 10 9 14 14 C 1.76201 * 107.21865 * 89.99497 * 11 10 9 15 15 H 1.08000 * 119.99871 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99686 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99760 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46943 * 120.00110 * 18 16 14 21 21 H 1.48500 * 109.47342 * 240.00031 * 18 16 14 22 22 C 1.46926 * 118.73951 * 306.38547 * 10 9 8 23 23 H 1.09002 * 109.47337 * 300.00268 * 1 2 3 24 24 H 1.09005 * 109.47070 * 60.00524 * 1 2 3 25 25 H 1.09008 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.45820 * 61.29430 * 7 5 3 27 27 H 1.09003 * 109.45295 * 301.33649 * 7 5 3 28 28 H 1.08999 * 109.50017 * 178.67783 * 8 7 5 29 29 H 1.09004 * 109.49998 * 58.58381 * 8 7 5 30 30 H 1.08998 * 109.58545 * 174.42116 * 9 8 7 31 31 H 1.08999 * 109.58713 * 294.84595 * 9 8 7 32 32 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 33 33 H 1.08998 * 109.58617 * 173.39731 * 22 10 9 34 34 H 1.08996 * 109.58899 * 293.68332 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9568 0.7800 0.8885 7 6 4.1135 0.5852 -1.2523 8 6 5.6430 0.6360 -1.2373 9 6 6.1015 2.0976 -1.2513 10 7 5.4633 2.8041 -0.1323 11 16 6.3746 3.6519 0.9601 12 8 5.6033 3.7304 2.1509 13 8 7.6796 3.0911 0.9149 14 6 6.5195 5.2991 0.3516 15 1 6.0492 5.5735 -0.5811 16 6 7.2341 6.2374 1.0657 17 7 7.8080 5.9028 2.2007 18 14 7.3883 7.9835 0.4202 19 1 6.6575 8.1018 -0.8671 20 1 6.8077 8.9291 1.4072 21 1 8.8218 8.3080 0.2078 22 6 4.0012 2.7439 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 3.7418 1.0962 -2.1404 27 1 3.7848 -0.4540 -1.2671 28 1 6.0326 0.1240 -2.1172 29 1 6.0145 0.1467 -0.3369 30 1 7.1849 2.1418 -1.1410 31 1 5.8086 2.5635 -2.1922 32 1 8.3105 6.5631 2.7032 33 1 3.6989 3.2144 0.9350 34 1 3.5371 3.2646 -0.8381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131076527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = -183.438276 kcal Electronic energy + Delta-G solvation = -20485.862457 eV Core-core repulsion = 17124.067397 eV Total energy + Delta-G solvation = -3361.795060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61714 -37.95190 -36.38153 -35.31947 -33.97907 -33.10003 -32.25871 -31.08633 -27.84949 -26.11522 -24.32094 -23.90461 -21.24632 -19.96618 -18.80255 -17.74969 -17.11665 -16.58632 -16.42482 -16.09365 -15.09277 -14.95566 -14.28417 -14.12104 -13.88343 -13.71766 -13.32820 -13.14169 -12.81345 -12.50241 -12.23255 -11.99872 -11.36943 -11.30002 -11.22280 -10.97860 -10.93385 -10.83856 -10.74919 -10.57150 -10.30681 -10.26337 -10.03541 -10.00884 -9.24996 -8.92921 -8.26462 -6.69280 -5.31232 2.17911 2.23345 2.73265 3.06780 3.15038 3.22827 4.06360 4.42951 4.64426 4.73529 4.83128 4.87616 4.99474 5.07233 5.20870 5.28584 5.42984 5.48937 5.69217 5.75406 5.84917 5.91602 6.01849 6.09955 6.19894 6.22757 6.34544 6.41595 6.48305 6.76727 7.33356 7.52025 7.76543 7.99393 8.90088 10.24379 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.005505 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.894033 B = 5084.884665 C = 5485.388972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.502 6.502 5 C -0.095 4.095 6 H 0.114 0.886 7 C -0.105 4.105 8 C -0.131 4.131 9 C 0.118 3.882 10 N -1.011 6.011 11 S 2.713 3.287 12 O -1.002 7.002 13 O -1.001 7.001 14 C -1.019 5.019 15 H 0.103 0.897 16 C 0.132 3.868 17 N -0.846 5.846 18 Si 0.921 3.079 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.141 3.859 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.290 0.710 33 H 0.102 0.898 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -10.558 -7.583 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.389 6.389 5 C -0.116 4.116 6 H 0.132 0.868 7 C -0.143 4.143 8 C -0.170 4.170 9 C -0.008 4.008 10 N -0.845 5.845 11 S 2.815 3.185 12 O -0.993 6.993 13 O -0.992 6.992 14 C -1.153 5.153 15 H 0.122 0.878 16 C -0.085 4.085 17 N -0.476 5.476 18 Si 0.745 3.255 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.196 1.196 22 C 0.014 3.986 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.976 -10.597 -6.628 15.388 hybrid contribution -0.332 1.417 -0.684 1.608 sum -9.308 -9.180 -7.312 14.979 Atomic orbital electron populations 1.23243 0.76727 1.03422 1.02565 1.86516 1.23132 1.33736 1.84266 1.23808 0.91873 0.81208 0.71928 1.90680 1.67119 1.36257 1.44840 1.21543 0.86355 1.01107 1.02631 0.86792 1.21465 0.96623 1.00501 0.95706 1.21914 0.94505 0.97737 1.02866 1.21317 0.98872 0.90967 0.89669 1.58247 1.14671 1.67462 1.44117 1.00583 0.71477 0.74900 0.71574 1.93353 1.71903 1.88489 1.45516 1.93350 1.38749 1.80618 1.86454 1.30637 1.45854 1.19229 1.19551 0.87844 1.24759 0.90208 1.01000 0.92570 1.69900 1.27901 1.37343 1.12462 0.86129 0.78715 0.80874 0.79829 1.18585 1.19581 1.19588 1.21020 0.80982 0.92256 1.04342 0.91886 0.91997 0.88301 0.91302 0.90707 0.90536 0.91070 0.88490 0.92131 0.89928 0.88017 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.43 10.45 -39.27 -0.41 -4.84 16 3 C 0.47 6.87 7.26 36.00 0.26 7.13 16 4 O -0.50 -8.64 15.67 -18.75 -0.29 -8.93 16 5 C -0.10 -1.40 2.78 -91.65 -0.25 -1.65 16 6 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 7 C -0.11 -1.26 5.11 -26.69 -0.14 -1.39 16 8 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 9 C 0.12 1.92 6.48 -3.71 -0.02 1.89 16 10 N -1.01 -20.29 3.29 -113.52 -0.37 -20.67 16 11 S 2.71 71.82 5.01 -107.50 -0.54 71.28 16 12 O -1.00 -29.17 16.61 -57.17 -0.95 -30.11 16 13 O -1.00 -28.62 16.61 -57.17 -0.95 -29.57 16 14 C -1.02 -28.28 9.75 30.60 0.30 -27.98 16 15 H 0.10 2.66 7.81 -52.49 -0.41 2.25 16 16 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 17 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 18 Si 0.92 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.14 2.55 5.11 -3.71 -0.02 2.53 16 23 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 25 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.69 6.92 -51.93 -0.36 1.33 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.10 2.05 6.91 -51.93 -0.36 1.69 16 34 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -35.52 301.37 -6.81 -42.33 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.48 Total: 0.78 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 0.93 Total: -16.30 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.36 Total: -44.90 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -2.60 Total: -73.46 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 71.82 SS G_CDS: -0.54 Total: 71.28 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.52 -6.81 -42.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131076527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.110 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds