Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99695 * 2 1 4 4 O 1.20831 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99956 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.49843 * 300.05444 * 5 3 2 7 7 C 1.53040 * 109.50327 * 60.15843 * 5 3 2 8 8 C 1.53037 * 109.54181 * 181.31898 * 7 5 3 9 9 C 1.53196 * 109.31040 * 298.63376 * 8 7 5 10 10 N 1.46920 * 108.77435 * 54.63686 * 9 8 7 11 11 S 1.65606 * 120.63323 * 126.37256 * 10 9 8 12 12 O 1.42097 * 106.40018 * 203.53618 * 11 10 9 13 13 O 1.42106 * 106.39822 * 336.45333 * 11 10 9 14 14 C 1.76201 * 107.21865 * 89.99497 * 11 10 9 15 15 H 1.08000 * 119.99871 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99686 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99760 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46943 * 120.00110 * 18 16 14 21 21 H 1.48500 * 109.47342 * 240.00031 * 18 16 14 22 22 C 1.46926 * 118.73951 * 306.38547 * 10 9 8 23 23 H 1.09002 * 109.47337 * 300.00268 * 1 2 3 24 24 H 1.09005 * 109.47070 * 60.00524 * 1 2 3 25 25 H 1.09008 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.45820 * 61.29430 * 7 5 3 27 27 H 1.09003 * 109.45295 * 301.33649 * 7 5 3 28 28 H 1.08999 * 109.50017 * 178.67783 * 8 7 5 29 29 H 1.09004 * 109.49998 * 58.58381 * 8 7 5 30 30 H 1.08998 * 109.58545 * 174.42116 * 9 8 7 31 31 H 1.08999 * 109.58713 * 294.84595 * 9 8 7 32 32 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 33 33 H 1.08998 * 109.58617 * 173.39731 * 22 10 9 34 34 H 1.08996 * 109.58899 * 293.68332 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9568 0.7800 0.8885 7 6 4.1135 0.5852 -1.2523 8 6 5.6430 0.6360 -1.2373 9 6 6.1015 2.0976 -1.2513 10 7 5.4633 2.8041 -0.1323 11 16 6.3746 3.6519 0.9601 12 8 5.6033 3.7304 2.1509 13 8 7.6796 3.0911 0.9149 14 6 6.5195 5.2991 0.3516 15 1 6.0492 5.5735 -0.5811 16 6 7.2341 6.2374 1.0657 17 7 7.8080 5.9028 2.2007 18 14 7.3883 7.9835 0.4202 19 1 6.6575 8.1018 -0.8671 20 1 6.8077 8.9291 1.4072 21 1 8.8218 8.3080 0.2078 22 6 4.0012 2.7439 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 3.7418 1.0962 -2.1404 27 1 3.7848 -0.4540 -1.2671 28 1 6.0326 0.1240 -2.1172 29 1 6.0145 0.1467 -0.3369 30 1 7.1849 2.1418 -1.1410 31 1 5.8086 2.5635 -2.1922 32 1 8.3105 6.5631 2.7032 33 1 3.6989 3.2144 0.9350 34 1 3.5371 3.2646 -0.8381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131076527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = -210.586296 kcal Electronic energy + Delta-G solvation = -20487.039684 eV Core-core repulsion = 17124.067397 eV Total energy + Delta-G solvation = -3362.972286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74074 -39.19057 -37.55603 -37.43268 -36.16820 -35.20460 -33.60658 -32.31881 -28.69787 -28.26890 -25.53306 -25.20433 -22.39489 -21.21254 -20.75746 -19.21894 -18.55835 -18.34364 -17.58771 -17.39920 -16.95859 -16.60413 -15.95972 -15.45071 -15.31667 -14.92720 -14.77274 -14.50182 -13.99317 -13.94732 -13.70533 -13.31992 -13.11214 -13.03983 -12.66238 -12.56525 -12.53171 -12.46590 -12.30140 -11.95359 -11.89521 -11.77189 -11.44734 -11.31112 -11.27811 -10.97858 -9.84826 -8.76437 -7.50555 0.24312 1.09962 1.31646 1.32531 1.50566 1.68547 2.19549 2.55579 2.78357 3.48585 3.68494 3.74627 3.84741 4.09184 4.11682 4.27515 4.33784 4.35644 4.41768 4.42584 4.58811 4.73666 4.80862 4.84809 4.96571 5.02707 5.13210 5.21045 5.30447 5.33910 5.40636 5.88282 5.91824 6.66815 6.76457 8.19083 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.005505 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.894033 B = 5084.884665 C = 5485.388972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.535 6.535 5 C -0.095 4.095 6 H 0.114 0.886 7 C -0.098 4.098 8 C -0.125 4.125 9 C 0.104 3.896 10 N -1.006 6.006 11 S 2.718 3.282 12 O -1.041 7.041 13 O -1.033 7.033 14 C -1.043 5.043 15 H 0.117 0.883 16 C 0.069 3.931 17 N -0.894 5.894 18 Si 0.990 3.010 19 H -0.249 1.249 20 H -0.260 1.260 21 H -0.255 1.255 22 C 0.137 3.863 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.136 0.864 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.299 0.701 33 H 0.070 0.930 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -11.290 -9.823 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.116 4.116 6 H 0.132 0.868 7 C -0.135 4.135 8 C -0.164 4.164 9 C -0.021 4.021 10 N -0.844 5.844 11 S 2.820 3.180 12 O -1.032 7.032 13 O -1.023 7.023 14 C -1.177 5.177 15 H 0.135 0.865 16 C -0.143 4.143 17 N -0.525 5.525 18 Si 0.808 3.192 19 H -0.172 1.172 20 H -0.184 1.184 21 H -0.180 1.180 22 C 0.010 3.990 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.154 0.846 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.933 -11.370 -8.866 17.509 hybrid contribution -0.120 1.535 -0.008 1.540 sum -10.053 -9.835 -8.875 16.630 Atomic orbital electron populations 1.23594 0.74692 1.05866 1.02540 1.86494 1.25014 1.32043 1.83555 1.23668 0.91690 0.81441 0.71138 1.90672 1.67749 1.37444 1.46560 1.21472 0.86945 0.98699 1.04514 0.86821 1.21503 0.95696 1.01939 0.94358 1.21924 0.95188 0.94959 1.04352 1.21720 0.97856 0.93453 0.89047 1.57701 1.15233 1.67169 1.44272 1.00037 0.71090 0.75027 0.71823 1.93291 1.72512 1.89025 1.48334 1.93295 1.40789 1.81041 1.87188 1.31036 1.46104 1.20318 1.20216 0.86475 1.26029 0.89421 1.06284 0.92596 1.69985 1.29045 1.39437 1.14068 0.85104 0.79721 0.74575 0.79778 1.17166 1.18407 1.17952 1.21087 0.79539 0.95069 1.03264 0.92414 0.91635 0.84625 0.89984 0.87803 0.86642 0.91906 0.90252 0.89549 0.89052 0.91107 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.87 10.45 -51.44 -0.54 -8.41 16 3 C 0.48 13.31 7.26 71.23 0.52 13.83 16 4 O -0.53 -18.14 15.67 21.95 0.34 -17.80 16 5 C -0.10 -2.68 2.78 -11.46 -0.03 -2.71 16 6 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 7 C -0.10 -2.00 5.11 30.62 0.16 -1.84 16 8 C -0.13 -2.83 6.08 30.67 0.19 -2.64 16 9 C 0.10 3.25 6.48 86.37 0.56 3.81 16 10 N -1.01 -40.67 3.29 -513.08 -1.69 -42.36 16 11 S 2.72 148.81 5.01 -56.49 -0.28 148.52 16 12 O -1.04 -63.53 16.61 -128.00 -2.13 -65.65 16 13 O -1.03 -61.23 16.61 -128.00 -2.13 -63.36 16 14 C -1.04 -58.88 9.75 67.73 0.66 -58.22 16 15 H 0.12 6.03 7.81 -2.91 -0.02 6.01 16 16 C 0.07 3.93 5.46 84.65 0.46 4.40 16 17 N -0.89 -54.09 13.19 21.45 0.28 -53.80 16 18 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 C 0.14 4.97 5.11 86.36 0.44 5.41 16 23 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 24 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 25 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 2.77 6.92 -2.39 -0.02 2.75 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.30 16.17 8.31 -92.71 -0.77 15.40 16 33 H 0.07 2.99 6.91 -2.39 -0.02 2.98 16 34 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 Total: -1.00 -79.93 301.37 1.14 -78.79 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.10 Total: 16.35 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 4.15 Total: -36.37 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -1.40 Total: -96.16 kcal Atomic # 8 Polarization: -150.78 SS G_CDS: -4.45 Total: -155.22 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 148.81 SS G_CDS: -0.28 Total: 148.52 kcal Total: -79.93 1.14 -78.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131076527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.794 kcal (2) G-P(sol) polarization free energy of solvation -79.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds