Wall clock time and date at job start Mon Mar 30 2020 02:03:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34230 * 117.00209 * 2 1
4 4 O 1.20826 * 119.99496 * 359.97438 * 3 2 1
5 5 C 1.50693 * 120.00217 * 180.02562 * 3 2 1
6 6 H 1.08999 * 109.70154 * 9.37654 * 5 3 2
7 7 C 1.53192 * 109.58414 * 249.02155 * 5 3 2
8 8 C 1.53045 * 109.31021 * 185.57697 * 7 5 3
9 9 C 1.53042 * 109.53818 * 61.36715 * 8 7 5
10 10 C 1.53192 * 109.31111 * 298.63180 * 9 8 7
11 11 N 1.46926 * 109.58838 * 129.73139 * 5 3 2
12 12 S 1.65596 * 120.62966 * 353.39836 * 11 5 3
13 13 O 1.42104 * 106.40276 * 195.77423 * 12 11 5
14 14 O 1.42095 * 106.40379 * 328.69291 * 12 11 5
15 15 C 1.76200 * 107.21992 * 82.23576 * 12 11 5
16 16 H 1.07998 * 119.99914 * 0.02562 * 15 12 11
17 17 C 1.37884 * 119.99716 * 180.02562 * 15 12 11
18 18 N 1.31514 * 119.99318 * 180.02562 * 17 15 12
19 19 Si 1.86794 * 120.00222 * 359.97438 * 17 15 12
20 20 H 1.48496 * 109.47148 * 90.00031 * 19 17 15
21 21 H 1.48502 * 109.47005 * 210.00554 * 19 17 15
22 22 H 1.48501 * 109.47373 * 330.00153 * 19 17 15
23 23 H 1.08993 * 109.47714 * 60.00005 * 1 2 3
24 24 H 1.09004 * 109.47088 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.47245 * 299.99654 * 1 2 3
26 26 H 1.08999 * 109.50145 * 305.52928 * 7 5 3
27 27 H 1.09000 * 109.50052 * 65.59521 * 7 5 3
28 28 H 1.09005 * 109.45450 * 181.38751 * 8 7 5
29 29 H 1.08996 * 109.46125 * 301.35393 * 8 7 5
30 30 H 1.08996 * 109.49629 * 58.58538 * 9 8 7
31 31 H 1.09002 * 109.49371 * 178.65188 * 9 8 7
32 32 H 1.09001 * 109.58616 * 174.42261 * 10 9 8
33 33 H 1.09001 * 109.58611 * 294.70615 * 10 9 8
34 34 H 0.97008 * 119.99759 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9862 0.2830 -0.1681
7 6 4.0526 1.8175 1.3470
8 6 5.5677 2.0263 1.2915
9 6 5.9034 3.0534 0.2076
10 6 5.4381 2.5247 -1.1528
11 7 4.0115 2.1844 -1.0651
12 16 2.9259 2.8141 -2.1455
13 8 3.6893 3.3255 -3.2296
14 8 1.9064 1.8373 -2.3055
15 6 2.1668 4.2037 -1.3724
16 1 2.4516 4.4860 -0.3696
17 6 1.2094 4.9305 -2.0478
18 7 0.6432 5.9679 -1.4709
19 14 0.7175 4.4426 -3.7825
20 1 -0.4111 3.4793 -3.7245
21 1 0.2986 5.6513 -4.5367
22 1 1.8741 3.8093 -4.4654
23 1 -0.3634 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 3.5616 2.7682 1.5550
27 1 3.8119 1.1037 2.1349
28 1 5.9198 2.3891 2.2572
29 1 6.0564 1.0802 1.0589
30 1 5.3950 3.9924 0.4264
31 1 6.9805 3.2194 0.1850
32 1 5.5846 3.2924 -1.9126
33 1 6.0124 1.6363 -1.4155
34 1 -0.0301 6.4796 -1.9462
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000156930005.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:03:26
Heat of formation + Delta-G solvation = -150.173516 kcal
Electronic energy + Delta-G solvation = -21816.796802 eV
Core-core repulsion = 18456.444211 eV
Total energy + Delta-G solvation = -3360.352592 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 277.086 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.09622 -37.87192 -36.08981 -35.23022 -34.44812 -32.87244 -32.09209 -31.26934
-27.39095 -26.23440 -24.61718 -23.52050 -20.73689 -20.29798 -18.47691 -17.60264
-17.18064 -16.63493 -15.97758 -15.59262 -15.01881 -14.86877 -14.38639 -13.92693
-13.76139 -13.45263 -13.24077 -13.10504 -12.75540 -12.52271 -12.09121 -11.67152
-11.61217 -11.35594 -11.15914 -10.97201 -10.74492 -10.65462 -10.64128 -10.50154
-10.20358 -10.00702 -9.84575 -9.52793 -9.06485 -9.02516 -8.35281 -6.63048
-5.04933 1.94194 2.80377 3.12550 3.16300 3.24116 3.32243 4.04844
4.18492 4.74300 4.90184 4.99345 5.02862 5.26370 5.33781 5.42169
5.47486 5.61140 5.65062 5.73967 5.82491 5.85839 5.88532 5.97326
6.08731 6.17910 6.23475 6.29974 6.51804 6.55297 7.04932 7.21278
7.65968 8.41848 8.46107 8.89339 10.50382
Molecular weight = 277.09amu
Principal moments of inertia in cm(-1)
A = 0.017962 B = 0.011102 C = 0.008610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.458376 B = 2521.419470 C = 3251.371155
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 O -0.359 6.359
3 C 0.437 3.563
4 O -0.442 6.442
5 C 0.177 3.823
6 H 0.095 0.905
7 C -0.126 4.126
8 C -0.110 4.110
9 C -0.139 4.139
10 C 0.126 3.874
11 N -0.993 5.993
12 S 2.666 3.334
13 O -1.006 7.006
14 O -1.008 7.008
15 C -0.967 4.967
16 H 0.123 0.877
17 C 0.154 3.846
18 N -0.827 5.827
19 Si 0.797 3.203
20 H -0.250 1.250
21 H -0.257 1.257
22 H -0.224 1.224
23 H 0.071 0.929
24 H 0.091 0.909
25 H 0.056 0.944
26 H 0.084 0.916
27 H 0.075 0.925
28 H 0.067 0.933
29 H 0.064 0.936
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.099 0.901
33 H 0.063 0.937
34 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.026 -9.639 5.814 13.269
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 O -0.276 6.276
3 C 0.276 3.724
4 O -0.325 6.325
5 C 0.069 3.931
6 H 0.113 0.887
7 C -0.165 4.165
8 C -0.148 4.148
9 C -0.178 4.178
10 C 0.001 3.999
11 N -0.830 5.830
12 S 2.771 3.229
13 O -0.996 6.996
14 O -0.998 6.998
15 C -1.103 5.103
16 H 0.141 0.859
17 C -0.064 4.064
18 N -0.458 5.458
19 Si 0.617 3.383
20 H -0.174 1.174
21 H -0.181 1.181
22 H -0.146 1.146
23 H 0.089 0.911
24 H 0.109 0.891
25 H 0.075 0.925
26 H 0.103 0.897
27 H 0.094 0.906
28 H 0.086 0.914
29 H 0.082 0.918
30 H 0.094 0.906
31 H 0.091 0.909
32 H 0.117 0.883
33 H 0.081 0.919
34 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 6.525 -9.553 4.934 12.577
hybrid contribution -0.780 0.408 -0.222 0.908
sum 5.745 -9.145 4.712 11.783
Atomic orbital electron populations
1.23143 0.76668 1.02452 1.02971 1.86315 1.23182 1.33315 1.84769
1.23311 0.91426 0.82685 0.75016 1.91051 1.66146 1.34394 1.40860
1.20137 0.87659 0.95306 0.90000 0.88716 1.21910 0.97208 1.02963
0.94453 1.21426 0.94738 0.99507 0.99116 1.21966 1.01004 0.99759
0.95085 1.21350 0.79809 1.00631 0.98132 1.57765 1.19151 1.60731
1.45383 1.01722 0.72593 0.75990 0.72592 1.93448 1.72275 1.81162
1.52762 1.93371 1.57091 1.63469 1.85862 1.30144 1.35003 1.30206
1.14972 0.85918 1.24338 0.92443 0.92484 0.97091 1.69995 1.22983
1.15359 1.37443 0.87968 0.83830 0.81291 0.85193 1.17391 1.18118
1.14637 0.91069 0.89074 0.92502 0.89712 0.90638 0.91427 0.91767
0.90624 0.90935 0.88303 0.91852 0.91347
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.68 10.56 101.05 1.07 1.75 16
2 O -0.36 -6.74 10.57 -39.49 -0.42 -7.16 16
3 C 0.44 9.16 4.45 36.00 0.16 9.32 16
4 O -0.44 -11.03 12.02 -26.47 -0.32 -11.35 16
5 C 0.18 3.11 3.34 -68.75 -0.23 2.88 16
6 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
7 C -0.13 -1.80 5.35 -26.61 -0.14 -1.94 16
8 C -0.11 -1.28 5.88 -26.69 -0.16 -1.43 16
9 C -0.14 -1.83 6.08 -26.61 -0.16 -2.00 16
10 C 0.13 2.02 6.42 -3.71 -0.02 2.00 16
11 N -0.99 -20.00 3.29 -107.70 -0.35 -20.35 16
12 S 2.67 69.74 3.58 -107.50 -0.38 69.36 16
13 O -1.01 -27.67 14.52 -57.17 -0.83 -28.50 16
14 O -1.01 -27.72 13.13 -66.80 -0.88 -28.59 16
15 C -0.97 -28.12 7.83 30.60 0.24 -27.88 16
16 H 0.12 3.67 8.00 -52.49 -0.42 3.25 16
17 C 0.15 4.62 5.47 -17.82 -0.10 4.52 16
18 N -0.83 -24.90 13.96 55.43 0.77 -24.13 16
19 Si 0.80 21.53 26.54 -169.99 -4.51 17.02 16
20 H -0.25 -6.65 7.11 56.52 0.40 -6.25 16
21 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16
22 H -0.22 -6.14 5.61 56.52 0.32 -5.83 16
23 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16
24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16
25 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16
26 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16
27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
32 H 0.10 1.71 6.92 -51.93 -0.36 1.35 16
33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 285.57 15.07 4.30 4.30
Total: -1.00 -35.45 285.57 -6.61 -42.06
By element:
Atomic # 1 Polarization: 4.77 SS G_CDS: -4.65 Total: 0.12 kcal
Atomic # 6 Polarization: -13.43 SS G_CDS: 0.65 Total: -12.78 kcal
Atomic # 7 Polarization: -44.90 SS G_CDS: 0.42 Total: -44.48 kcal
Atomic # 8 Polarization: -73.15 SS G_CDS: -2.44 Total: -75.60 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -4.51 Total: 17.02 kcal
Atomic # 16 Polarization: 69.74 SS G_CDS: -0.38 Total: 69.36 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -35.45 -6.61 -42.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156930005.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.111 kcal
(2) G-P(sol) polarization free energy of solvation -35.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds