Wall clock time and date at job start Mon Mar 30 2020 02:03:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34230 * 117.00209 * 2 1
4 4 O 1.20826 * 119.99496 * 359.97438 * 3 2 1
5 5 C 1.50693 * 120.00217 * 180.02562 * 3 2 1
6 6 H 1.08999 * 109.70154 * 9.37654 * 5 3 2
7 7 C 1.53192 * 109.58414 * 249.02155 * 5 3 2
8 8 C 1.53045 * 109.31021 * 185.57697 * 7 5 3
9 9 C 1.53042 * 109.53818 * 61.36715 * 8 7 5
10 10 C 1.53192 * 109.31111 * 298.63180 * 9 8 7
11 11 N 1.46926 * 109.58838 * 129.73139 * 5 3 2
12 12 S 1.65596 * 120.62966 * 353.39836 * 11 5 3
13 13 O 1.42104 * 106.40276 * 195.77423 * 12 11 5
14 14 O 1.42095 * 106.40379 * 328.69291 * 12 11 5
15 15 C 1.76200 * 107.21992 * 82.23576 * 12 11 5
16 16 H 1.07998 * 119.99914 * 0.02562 * 15 12 11
17 17 C 1.37884 * 119.99716 * 180.02562 * 15 12 11
18 18 N 1.31514 * 119.99318 * 180.02562 * 17 15 12
19 19 Si 1.86794 * 120.00222 * 359.97438 * 17 15 12
20 20 H 1.48496 * 109.47148 * 90.00031 * 19 17 15
21 21 H 1.48502 * 109.47005 * 210.00554 * 19 17 15
22 22 H 1.48501 * 109.47373 * 330.00153 * 19 17 15
23 23 H 1.08993 * 109.47714 * 60.00005 * 1 2 3
24 24 H 1.09004 * 109.47088 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.47245 * 299.99654 * 1 2 3
26 26 H 1.08999 * 109.50145 * 305.52928 * 7 5 3
27 27 H 1.09000 * 109.50052 * 65.59521 * 7 5 3
28 28 H 1.09005 * 109.45450 * 181.38751 * 8 7 5
29 29 H 1.08996 * 109.46125 * 301.35393 * 8 7 5
30 30 H 1.08996 * 109.49629 * 58.58538 * 9 8 7
31 31 H 1.09002 * 109.49371 * 178.65188 * 9 8 7
32 32 H 1.09001 * 109.58616 * 174.42261 * 10 9 8
33 33 H 1.09001 * 109.58611 * 294.70615 * 10 9 8
34 34 H 0.97008 * 119.99759 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9862 0.2830 -0.1681
7 6 4.0526 1.8175 1.3470
8 6 5.5677 2.0263 1.2915
9 6 5.9034 3.0534 0.2076
10 6 5.4381 2.5247 -1.1528
11 7 4.0115 2.1844 -1.0651
12 16 2.9259 2.8141 -2.1455
13 8 3.6893 3.3255 -3.2296
14 8 1.9064 1.8373 -2.3055
15 6 2.1668 4.2037 -1.3724
16 1 2.4516 4.4860 -0.3696
17 6 1.2094 4.9305 -2.0478
18 7 0.6432 5.9679 -1.4709
19 14 0.7175 4.4426 -3.7825
20 1 -0.4111 3.4793 -3.7245
21 1 0.2986 5.6513 -4.5367
22 1 1.8741 3.8093 -4.4654
23 1 -0.3634 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 3.5616 2.7682 1.5550
27 1 3.8119 1.1037 2.1349
28 1 5.9198 2.3891 2.2572
29 1 6.0564 1.0802 1.0589
30 1 5.3950 3.9924 0.4264
31 1 6.9805 3.2194 0.1850
32 1 5.5846 3.2924 -1.9126
33 1 6.0124 1.6363 -1.4155
34 1 -0.0301 6.4796 -1.9462
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000156930005.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:03:26
Heat of formation + Delta-G solvation = -177.540812 kcal
Electronic energy + Delta-G solvation = -21817.983537 eV
Core-core repulsion = 18456.444211 eV
Total energy + Delta-G solvation = -3361.539327 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 277.086 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.65965 -39.18837 -37.96983 -37.04551 -36.57081 -35.11033 -33.38787 -32.55411
-28.75515 -28.47569 -25.94095 -24.74684 -22.24330 -21.68228 -20.27756 -19.47166
-19.01706 -18.37304 -17.58551 -17.39147 -16.73921 -16.51017 -15.80849 -15.51189
-15.33182 -15.05143 -14.93183 -14.63421 -14.50396 -13.99944 -13.58493 -13.47829
-13.34702 -12.98769 -12.87700 -12.71372 -12.60057 -12.40581 -12.03349 -11.90217
-11.74176 -11.61808 -11.38131 -11.32853 -11.17806 -11.00933 -9.91693 -8.89535
-7.31184 0.00384 0.96997 1.06832 1.12976 1.21787 1.72378 1.86041
2.41526 2.49005 3.33030 3.61966 3.74680 3.90594 4.03312 4.14484
4.26655 4.31005 4.36005 4.40954 4.45050 4.71007 4.74705 4.76238
4.92404 5.03079 5.20065 5.25010 5.28601 5.46473 5.52115 5.53815
5.71711 6.14018 6.62629 6.84300 8.29732
Molecular weight = 277.09amu
Principal moments of inertia in cm(-1)
A = 0.017962 B = 0.011102 C = 0.008610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.458376 B = 2521.419470 C = 3251.371155
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.354 6.354
3 C 0.429 3.571
4 O -0.494 6.494
5 C 0.169 3.831
6 H 0.139 0.861
7 C -0.125 4.125
8 C -0.103 4.103
9 C -0.138 4.138
10 C 0.111 3.889
11 N -0.993 5.993
12 S 2.685 3.315
13 O -1.025 7.025
14 O -1.026 7.026
15 C -0.982 4.982
16 H 0.097 0.903
17 C 0.106 3.894
18 N -0.862 5.862
19 Si 0.822 3.178
20 H -0.248 1.248
21 H -0.220 1.220
22 H -0.231 1.231
23 H 0.038 0.962
24 H 0.140 0.860
25 H 0.062 0.938
26 H 0.049 0.951
27 H 0.108 0.892
28 H 0.091 0.909
29 H 0.097 0.903
30 H 0.045 0.955
31 H 0.110 0.890
32 H 0.078 0.922
33 H 0.105 0.895
34 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.949 -11.921 6.373 16.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.270 6.270
3 C 0.270 3.730
4 O -0.381 6.381
5 C 0.062 3.938
6 H 0.156 0.844
7 C -0.164 4.164
8 C -0.140 4.140
9 C -0.177 4.177
10 C -0.012 4.012
11 N -0.834 5.834
12 S 2.788 3.212
13 O -1.015 7.015
14 O -1.016 7.016
15 C -1.116 5.116
16 H 0.115 0.885
17 C -0.108 4.108
18 N -0.494 5.494
19 Si 0.639 3.361
20 H -0.172 1.172
21 H -0.142 1.142
22 H -0.154 1.154
23 H 0.057 0.943
24 H 0.158 0.842
25 H 0.081 0.919
26 H 0.068 0.932
27 H 0.126 0.874
28 H 0.110 0.890
29 H 0.115 0.885
30 H 0.064 0.936
31 H 0.128 0.872
32 H 0.096 0.904
33 H 0.124 0.876
34 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 8.439 -11.818 5.495 15.527
hybrid contribution -1.342 1.028 -0.279 1.713
sum 7.097 -10.790 5.216 13.928
Atomic orbital electron populations
1.23416 0.75540 1.05271 1.01667 1.86321 1.24370 1.32206 1.84061
1.24194 0.93028 0.82441 0.73296 1.91032 1.67548 1.36132 1.43344
1.20700 0.85446 0.96838 0.90793 0.84395 1.21993 0.99142 1.01916
0.93318 1.21472 0.92414 1.00522 0.99626 1.22001 1.02845 0.98897
0.93966 1.21801 0.77667 1.02150 0.99592 1.57409 1.19931 1.60724
1.45324 1.00864 0.72638 0.74875 0.72789 1.93412 1.72472 1.81700
1.53952 1.93339 1.58708 1.63024 1.86484 1.30641 1.35076 1.31894
1.14005 0.88504 1.25082 0.92861 0.92790 1.00059 1.70035 1.24069
1.16349 1.38969 0.87568 0.83383 0.82672 0.82427 1.17219 1.14167
1.15367 0.94330 0.84163 0.91946 0.93201 0.87403 0.89028 0.88482
0.93645 0.87183 0.90370 0.87648 0.90459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.10 10.56 113.37 1.20 2.29 16
2 O -0.35 -12.79 10.57 -51.20 -0.54 -13.33 16
3 C 0.43 17.82 4.45 71.23 0.32 18.14 16
4 O -0.49 -25.49 12.02 29.35 0.35 -25.14 16
5 C 0.17 5.57 3.34 44.23 0.15 5.71 16
6 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16
7 C -0.12 -3.24 5.35 30.67 0.16 -3.08 16
8 C -0.10 -1.92 5.88 30.62 0.18 -1.74 16
9 C -0.14 -3.25 6.08 30.67 0.19 -3.06 16
10 C 0.11 3.32 6.42 86.36 0.55 3.87 16
11 N -0.99 -38.86 3.29 -494.66 -1.63 -40.49 16
12 S 2.69 142.09 3.58 -56.49 -0.20 141.89 16
13 O -1.03 -56.83 14.52 -128.00 -1.86 -58.69 16
14 O -1.03 -57.01 13.13 -118.80 -1.56 -58.57 16
15 C -0.98 -59.46 7.83 67.74 0.53 -58.93 16
16 H 0.10 6.17 8.00 -2.91 -0.02 6.15 16
17 C 0.11 6.57 5.47 84.66 0.46 7.03 16
18 N -0.86 -53.64 13.96 21.45 0.30 -53.34 16
19 Si 0.82 44.24 26.54 68.60 1.82 46.06 16
20 H -0.25 -13.17 7.11 99.48 0.71 -12.46 16
21 H -0.22 -10.40 7.11 99.48 0.71 -9.69 16
22 H -0.23 -12.65 5.61 99.48 0.56 -12.09 16
23 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16
24 H 0.14 2.99 8.14 -2.38 -0.02 2.98 16
25 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16
26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16
28 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16
29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
31 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.08 2.65 6.92 -2.39 -0.02 2.63 16
33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16
34 H 0.29 16.08 8.31 -92.70 -0.77 15.31 16
Total: -1.00 -81.58 285.57 1.37 -80.20
By element:
Atomic # 1 Polarization: 10.22 SS G_CDS: 0.95 Total: 11.16 kcal
Atomic # 6 Polarization: -33.50 SS G_CDS: 3.74 Total: -29.76 kcal
Atomic # 7 Polarization: -92.50 SS G_CDS: -1.33 Total: -93.83 kcal
Atomic # 8 Polarization: -152.12 SS G_CDS: -3.61 Total: -155.72 kcal
Atomic # 14 Polarization: 44.24 SS G_CDS: 1.82 Total: 46.06 kcal
Atomic # 16 Polarization: 142.09 SS G_CDS: -0.20 Total: 141.89 kcal
Total: -81.58 1.37 -80.20 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156930005.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.337 kcal
(2) G-P(sol) polarization free energy of solvation -81.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds