Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99976 * 2 1 4 4 O 1.20824 * 119.99871 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00024 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.49991 * 59.94182 * 5 3 2 7 7 C 1.53035 * 109.50218 * 299.84230 * 5 3 2 8 8 C 1.53039 * 109.54147 * 178.68218 * 7 5 3 9 9 C 1.52765 * 109.38205 * 61.23852 * 8 7 5 10 10 N 1.46926 * 109.00911 * 305.59171 * 9 8 7 11 11 S 1.65604 * 120.62665 * 233.58647 * 10 9 8 12 12 O 1.42099 * 106.39818 * 156.17745 * 11 10 9 13 13 O 1.42097 * 106.40313 * 23.25478 * 11 10 9 14 14 C 1.76203 * 107.21290 * 269.71486 * 11 10 9 15 15 H 1.07991 * 120.00454 * 359.72757 * 14 11 10 16 16 C 1.37885 * 119.99682 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.72372 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.72804 * 16 14 11 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 C 1.46920 * 118.73758 * 53.30691 * 10 9 8 23 23 H 1.08996 * 109.47331 * 60.00131 * 1 2 3 24 24 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47192 * 299.99371 * 1 2 3 26 26 H 1.09006 * 109.45980 * 298.70487 * 7 5 3 27 27 H 1.08997 * 109.46075 * 58.67459 * 7 5 3 28 28 H 1.09000 * 109.49926 * 181.31153 * 8 7 5 29 29 H 1.08993 * 109.49857 * 301.41534 * 8 7 5 30 30 H 1.08999 * 109.50951 * 185.70565 * 9 8 7 31 31 H 1.09006 * 109.43145 * 65.42853 * 9 8 7 32 32 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.58889 * 66.43456 * 22 10 9 34 34 H 1.09003 * 109.58443 * 186.86147 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9569 0.7798 -0.8885 7 6 4.1135 0.5851 1.2522 8 6 5.6430 0.6358 1.2373 9 6 6.1020 2.0928 1.2480 10 7 5.4633 2.8040 0.1322 11 16 6.3748 3.6516 -0.9602 12 8 5.6037 3.7296 -2.1512 13 8 7.6798 3.0912 -0.9144 14 6 6.5191 5.2990 -0.3520 15 1 6.0446 5.5749 0.5780 16 6 7.2329 6.2376 -1.0667 17 7 7.8105 5.9018 -2.1995 18 14 7.3796 7.9861 -0.4258 19 1 8.0379 7.9719 0.9052 20 1 8.1914 8.7934 -1.3716 21 1 6.0255 8.5831 -0.3021 22 6 4.0013 2.7438 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.7418 1.0961 2.1404 27 1 3.7851 -0.4541 1.2671 28 1 6.0326 0.1240 2.1173 29 1 6.0145 0.1466 0.3370 30 1 7.1854 2.1340 1.1354 31 1 5.8127 2.5573 2.1908 32 1 8.3130 6.5620 -2.7020 33 1 3.5372 3.2623 0.8394 34 1 3.6990 3.2143 -0.9351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156930817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -210.534169 kcal Electronic energy + Delta-G solvation = -20487.683302 eV Core-core repulsion = 17124.713276 eV Total energy + Delta-G solvation = -3362.970026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74377 -39.20460 -37.55824 -37.43389 -36.16834 -35.20019 -33.60475 -32.34430 -28.69890 -28.26277 -25.53984 -25.20592 -22.39180 -21.21260 -20.75257 -19.21832 -18.55640 -18.34290 -17.58626 -17.39864 -16.95655 -16.60603 -15.96066 -15.45113 -15.32229 -14.92907 -14.77911 -14.50418 -13.97502 -13.95014 -13.71366 -13.33809 -13.11154 -13.01146 -12.66297 -12.56323 -12.52951 -12.46321 -12.33150 -11.95040 -11.89640 -11.77263 -11.45130 -11.30969 -11.24878 -10.99576 -9.84985 -8.75941 -7.50322 0.24276 1.09919 1.32405 1.35120 1.48044 1.68488 2.19757 2.56238 2.78279 3.48560 3.68473 3.74520 3.84675 4.09856 4.11598 4.27365 4.33737 4.35630 4.41946 4.42623 4.58818 4.73648 4.80784 4.84830 4.96481 5.02709 5.13373 5.20955 5.30392 5.33948 5.40635 5.87941 5.91868 6.66759 6.76498 8.19198 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027584 B = 0.005508 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.837909 B = 5082.583437 C = 5485.433015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.535 6.535 5 C -0.096 4.096 6 H 0.114 0.886 7 C -0.097 4.097 8 C -0.126 4.126 9 C 0.104 3.896 10 N -1.006 6.006 11 S 2.718 3.282 12 O -1.042 7.042 13 O -1.033 7.033 14 C -1.045 5.045 15 H 0.117 0.883 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.989 3.011 19 H -0.248 1.248 20 H -0.262 1.262 21 H -0.254 1.254 22 C 0.137 3.863 23 H 0.057 0.943 24 H 0.136 0.864 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.299 0.701 33 H 0.083 0.917 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 -11.290 9.826 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.117 4.117 6 H 0.132 0.868 7 C -0.135 4.135 8 C -0.165 4.165 9 C -0.021 4.021 10 N -0.844 5.844 11 S 2.821 3.179 12 O -1.032 7.032 13 O -1.023 7.023 14 C -1.178 5.178 15 H 0.136 0.864 16 C -0.143 4.143 17 N -0.525 5.525 18 Si 0.807 3.193 19 H -0.171 1.171 20 H -0.186 1.186 21 H -0.177 1.177 22 C 0.010 3.990 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.939 -11.368 8.865 17.510 hybrid contribution -0.136 1.530 0.018 1.536 sum -10.075 -9.838 8.883 16.649 Atomic orbital electron populations 1.23591 0.74691 1.05867 1.02539 1.86493 1.25014 1.32046 1.83556 1.23665 0.91686 0.81440 0.71139 1.90671 1.67750 1.37444 1.46557 1.21474 0.86953 0.98718 1.04514 0.86831 1.21502 0.95685 1.01945 0.94359 1.21853 0.95210 0.95018 1.04377 1.21628 0.97853 0.93443 0.89147 1.57698 1.15211 1.67003 1.44456 1.00013 0.71077 0.75022 0.71807 1.93292 1.72531 1.89032 1.48326 1.93293 1.40785 1.81050 1.87181 1.30994 1.46111 1.20279 1.20415 0.86444 1.26030 0.89415 1.06302 0.92554 1.69979 1.28870 1.39567 1.14089 0.85176 0.79992 0.74424 0.79680 1.17108 1.18565 1.17744 1.21088 0.79547 0.95073 1.03248 0.92416 0.84626 0.91634 0.89976 0.87801 0.86596 0.91930 0.90261 0.89572 0.89045 0.89905 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.87 10.45 -51.45 -0.54 -8.41 16 3 C 0.48 13.31 7.26 71.23 0.52 13.83 16 4 O -0.53 -18.15 15.67 21.97 0.34 -17.80 16 5 C -0.10 -2.69 2.78 -11.46 -0.03 -2.72 16 6 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 7 C -0.10 -2.00 5.11 30.62 0.16 -1.84 16 8 C -0.13 -2.83 6.07 30.53 0.19 -2.65 16 9 C 0.10 3.25 6.45 86.22 0.56 3.80 16 10 N -1.01 -40.65 3.30 -513.85 -1.69 -42.35 16 11 S 2.72 148.83 5.01 -56.49 -0.28 148.55 16 12 O -1.04 -63.54 16.61 -128.00 -2.13 -65.67 16 13 O -1.03 -61.24 16.60 -128.00 -2.12 -63.37 16 14 C -1.04 -58.91 9.75 67.74 0.66 -58.25 16 15 H 0.12 6.01 7.81 -2.92 -0.02 5.99 16 16 C 0.07 3.96 5.46 84.66 0.46 4.42 16 17 N -0.89 -54.11 13.19 21.45 0.28 -53.82 16 18 Si 0.99 42.00 29.54 68.60 2.03 44.02 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 22 C 0.14 4.97 5.11 86.36 0.44 5.41 16 23 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 24 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 26 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.77 6.91 -2.39 -0.02 2.75 16 31 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.30 16.27 8.31 -92.71 -0.77 15.50 16 33 H 0.08 2.77 7.95 -2.39 -0.02 2.75 16 34 H 0.07 3.00 6.92 -2.39 -0.02 2.98 16 Total: -1.00 -79.84 301.33 1.13 -78.71 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.10 Total: 16.52 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 4.14 Total: -36.39 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -1.41 Total: -96.17 kcal Atomic # 8 Polarization: -150.80 SS G_CDS: -4.44 Total: -155.24 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 148.83 SS G_CDS: -0.28 Total: 148.55 kcal Total: -79.84 1.13 -78.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156930817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.823 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds