Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34141 * 125.12942 * 2 1 4 4 C 1.38051 * 107.91959 * 180.02562 * 3 2 1 5 5 C 1.47132 * 126.82371 * 179.97438 * 4 3 2 6 6 O 1.21654 * 119.99997 * 180.02562 * 5 4 3 7 7 N 1.34768 * 119.99702 * 0.03959 * 5 4 3 8 8 C 1.36963 * 120.00174 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99604 * 359.97438 * 8 7 5 10 10 C 1.38978 * 120.00911 * 180.02562 * 8 7 5 11 11 N 1.31420 * 119.99269 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00606 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46939 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47273 * 120.00194 * 12 10 8 15 15 H 1.48503 * 109.46843 * 239.99809 * 12 10 8 16 16 C 1.46778 * 106.35454 * 0.02562 * 4 3 2 17 17 C 1.47685 * 126.54146 * 179.97438 * 16 4 3 18 18 C 1.34871 * 125.27013 * 144.99624 * 17 16 4 19 19 C 1.37932 * 114.69511 * 179.75272 * 18 17 16 20 20 C 1.33643 * 115.06802 * 0.25589 * 19 18 17 21 21 S 1.75853 * 109.77006 * 359.97438 * 20 19 18 22 22 N 1.31573 * 106.91482 * 0.22869 * 16 4 3 23 23 H 1.08999 * 109.47672 * 89.99713 * 1 2 3 24 24 H 1.08998 * 109.46909 * 209.99862 * 1 2 3 25 25 H 1.09003 * 109.47015 * 329.99068 * 1 2 3 26 26 H 1.08001 * 126.03958 * 0.04325 * 3 2 1 27 27 H 0.97005 * 120.00730 * 0.02562 * 7 5 4 28 28 H 0.97002 * 119.99702 * 180.02562 * 11 10 8 29 29 H 1.08002 * 122.65625 * 0.03466 * 18 17 16 30 30 H 1.08001 * 122.46881 * 180.26825 * 19 18 17 31 31 H 1.08000 * 125.11408 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2369 1.0971 0.0000 4 6 3.5556 0.6886 -0.0006 5 6 4.7464 1.5527 -0.0013 6 8 5.8575 1.0573 -0.0023 7 7 4.6063 2.8931 -0.0007 8 6 5.7147 3.6976 -0.0008 9 1 6.7012 3.2577 -0.0011 10 6 5.5704 5.0799 0.0004 11 7 4.3701 5.6150 0.0012 12 14 7.0822 6.1770 -0.0006 13 1 8.3051 5.3345 -0.0020 14 1 7.0703 7.0352 -1.2123 15 1 7.0730 7.0334 1.2126 16 6 3.5337 -0.7790 -0.0016 17 6 4.7070 -1.6759 -0.0030 18 6 4.7783 -2.8659 0.6278 19 6 5.9794 -3.5270 0.4769 20 6 6.8887 -2.8872 -0.2647 21 16 6.2288 -1.3565 -0.8250 22 7 2.2693 -1.1430 -0.0066 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8883 2.1193 0.0007 27 1 3.7204 3.2883 0.0007 28 1 4.2693 6.5798 0.0016 29 1 3.9582 -3.2714 1.2017 30 1 6.1710 -4.4909 0.9248 31 1 7.8794 -3.2553 -0.4872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160277499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = 78.221604 kcal Electronic energy + Delta-G solvation = -18401.169114 eV Core-core repulsion = 15390.322149 eV Total energy + Delta-G solvation = -3010.846965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64397 -37.75427 -37.15492 -34.04285 -33.12140 -31.46057 -29.97361 -29.12117 -26.45375 -25.01255 -23.63222 -21.90861 -20.57238 -19.24902 -18.42980 -18.06560 -16.91380 -16.27390 -15.38536 -15.31725 -14.93311 -14.52266 -14.01053 -13.53853 -13.39604 -13.01812 -12.74162 -12.67289 -12.40616 -12.07383 -11.99151 -11.70870 -11.57073 -11.14616 -10.62911 -10.37698 -10.25588 -10.04180 -9.56748 -9.45326 -8.63677 -8.34194 -8.02743 -7.79041 -7.49330 -6.49508 -3.84330 1.18603 2.00580 2.07274 2.62347 2.65991 2.81511 3.17291 3.24886 3.32262 3.37226 4.13789 4.40273 4.57281 4.81450 5.07831 5.13065 5.17196 5.34286 5.36615 5.46436 5.59923 5.88916 5.95188 6.01136 6.31860 6.51119 6.61766 6.85482 6.91136 7.13321 7.50035 7.84790 8.04337 8.57077 9.12647 9.49441 10.03403 10.68420 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.006230 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.383796 B = 4493.008336 C = 6110.626342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.373 5.373 3 C 0.076 3.924 4 C -0.241 4.241 5 C 0.507 3.493 6 O -0.579 6.579 7 N -0.550 5.550 8 C -0.291 4.291 9 H 0.108 0.892 10 C 0.021 3.979 11 N -0.899 5.899 12 Si 0.931 3.069 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.180 3.820 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.267 4.267 21 S 0.280 5.720 22 N -0.287 5.287 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.184 0.816 27 H 0.390 0.610 28 H 0.272 0.728 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 -10.380 -0.694 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 C -0.071 4.071 4 C -0.257 4.257 5 C 0.294 3.706 6 O -0.466 6.466 7 N -0.184 5.184 8 C -0.420 4.420 9 H 0.126 0.874 10 C -0.181 4.181 11 N -0.540 5.540 12 Si 0.758 3.242 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.011 3.989 17 C -0.246 4.246 18 C -0.160 4.160 19 C -0.180 4.180 20 C -0.405 4.405 21 S 0.548 5.452 22 N -0.109 5.109 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.201 0.799 27 H 0.223 0.777 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.448 -10.211 -1.618 11.686 hybrid contribution -0.163 0.518 1.072 1.202 sum -5.611 -9.692 -0.546 11.212 Atomic orbital electron populations 1.21869 0.74275 1.04466 1.03343 1.47930 1.06603 1.03353 1.57539 1.22971 0.90693 0.93226 1.00209 1.21772 0.93468 0.92538 1.17903 1.16798 0.87036 0.82084 0.84660 1.90530 1.25544 1.73072 1.57492 1.41756 1.09640 1.03879 1.63127 1.19835 0.88387 0.87289 1.46523 0.87381 1.25302 0.98144 0.97379 0.97245 1.69613 1.21718 1.12575 1.50068 0.85768 0.81165 0.79551 0.77723 1.19036 1.20717 1.20736 1.20666 0.89753 0.90499 0.97999 1.21775 0.96824 0.97591 1.08401 1.20125 0.98837 0.94295 1.02695 1.19776 0.93428 1.01532 1.03273 1.26339 1.04461 1.01356 1.08303 1.85173 1.03773 1.09979 1.46318 1.77288 1.01134 1.06791 1.25733 0.90799 0.89420 0.89283 0.79937 0.77650 0.91804 0.85033 0.85380 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 11.39 59.85 0.68 1.64 16 2 N -0.37 -5.72 3.95 -67.62 -0.27 -5.98 16 3 C 0.08 1.28 10.94 -16.61 -0.18 1.10 16 4 C -0.24 -5.04 6.32 -102.91 -0.65 -5.69 16 5 C 0.51 12.33 7.76 -12.66 -0.10 12.23 16 6 O -0.58 -15.17 12.52 5.23 0.07 -15.10 16 7 N -0.55 -13.79 5.27 -12.04 -0.06 -13.85 16 8 C -0.29 -7.87 9.68 -14.99 -0.15 -8.02 16 9 H 0.11 3.05 7.15 -52.48 -0.38 2.68 16 10 C 0.02 0.55 5.50 -17.45 -0.10 0.46 16 11 N -0.90 -23.63 13.05 55.50 0.72 -22.90 16 12 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C 0.18 3.62 7.24 -80.67 -0.58 3.03 16 17 C -0.13 -2.43 6.11 -36.92 -0.23 -2.65 16 18 C -0.13 -2.12 10.10 -40.89 -0.41 -2.53 16 19 C -0.15 -2.23 10.16 -41.30 -0.42 -2.65 16 20 C -0.27 -4.07 11.22 29.12 0.33 -3.74 16 21 S 0.28 5.21 19.79 -107.50 -2.13 3.09 16 22 N -0.29 -5.25 12.51 34.51 0.43 -4.82 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.18 2.56 7.48 -52.49 -0.39 2.16 16 27 H 0.39 9.21 6.85 -40.82 -0.28 8.93 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -31.92 292.76 -6.37 -38.29 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -2.72 Total: 8.19 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.80 Total: -6.80 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.83 Total: -47.55 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.07 Total: -15.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.13 Total: 3.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.92 -6.37 -38.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160277499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.510 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds