Wall clock time and date at job start Mon Mar 30 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34141 * 125.12942 * 2 1 4 4 C 1.38051 * 107.91959 * 180.02562 * 3 2 1 5 5 C 1.47132 * 126.82371 * 179.97438 * 4 3 2 6 6 O 1.21654 * 119.99997 * 180.02562 * 5 4 3 7 7 N 1.34768 * 119.99702 * 0.03959 * 5 4 3 8 8 C 1.36963 * 120.00174 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99604 * 359.97438 * 8 7 5 10 10 C 1.38978 * 120.00911 * 180.02562 * 8 7 5 11 11 N 1.31420 * 119.99269 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00606 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46939 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47273 * 120.00194 * 12 10 8 15 15 H 1.48503 * 109.46843 * 239.99809 * 12 10 8 16 16 C 1.46778 * 106.35454 * 0.02562 * 4 3 2 17 17 C 1.47685 * 126.54146 * 179.97438 * 16 4 3 18 18 C 1.34871 * 125.27013 * 144.99624 * 17 16 4 19 19 C 1.37932 * 114.69511 * 179.75272 * 18 17 16 20 20 C 1.33643 * 115.06802 * 0.25589 * 19 18 17 21 21 S 1.75853 * 109.77006 * 359.97438 * 20 19 18 22 22 N 1.31573 * 106.91482 * 0.22869 * 16 4 3 23 23 H 1.08999 * 109.47672 * 89.99713 * 1 2 3 24 24 H 1.08998 * 109.46909 * 209.99862 * 1 2 3 25 25 H 1.09003 * 109.47015 * 329.99068 * 1 2 3 26 26 H 1.08001 * 126.03958 * 0.04325 * 3 2 1 27 27 H 0.97005 * 120.00730 * 0.02562 * 7 5 4 28 28 H 0.97002 * 119.99702 * 180.02562 * 11 10 8 29 29 H 1.08002 * 122.65625 * 0.03466 * 18 17 16 30 30 H 1.08001 * 122.46881 * 180.26825 * 19 18 17 31 31 H 1.08000 * 125.11408 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2369 1.0971 0.0000 4 6 3.5556 0.6886 -0.0006 5 6 4.7464 1.5527 -0.0013 6 8 5.8575 1.0573 -0.0023 7 7 4.6063 2.8931 -0.0007 8 6 5.7147 3.6976 -0.0008 9 1 6.7012 3.2577 -0.0011 10 6 5.5704 5.0799 0.0004 11 7 4.3701 5.6150 0.0012 12 14 7.0822 6.1770 -0.0006 13 1 8.3051 5.3345 -0.0020 14 1 7.0703 7.0352 -1.2123 15 1 7.0730 7.0334 1.2126 16 6 3.5337 -0.7790 -0.0016 17 6 4.7070 -1.6759 -0.0030 18 6 4.7783 -2.8659 0.6278 19 6 5.9794 -3.5270 0.4769 20 6 6.8887 -2.8872 -0.2647 21 16 6.2288 -1.3565 -0.8250 22 7 2.2693 -1.1430 -0.0066 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8883 2.1193 0.0007 27 1 3.7204 3.2883 0.0007 28 1 4.2693 6.5798 0.0016 29 1 3.9582 -3.2714 1.2017 30 1 6.1710 -4.4909 0.9248 31 1 7.8794 -3.2553 -0.4872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160277499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:41 Heat of formation + Delta-G solvation = 56.892265 kcal Electronic energy + Delta-G solvation = -18402.094024 eV Core-core repulsion = 15390.322149 eV Total energy + Delta-G solvation = -3011.771875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.02810 -39.60068 -38.43218 -35.94978 -34.37296 -33.35180 -31.43877 -30.39048 -27.74548 -26.76401 -24.97846 -23.42063 -21.88094 -20.89794 -20.09802 -19.55139 -18.42314 -17.77042 -16.92273 -16.57399 -16.32859 -16.17029 -15.74150 -15.13421 -14.95341 -14.45420 -14.03731 -13.90602 -13.52730 -13.43924 -13.29308 -13.23655 -12.95269 -12.90733 -12.35663 -12.10985 -11.98358 -11.56235 -11.29524 -10.75370 -10.41264 -9.98253 -9.75280 -9.15778 -8.96196 -8.45268 -5.88340 -0.15928 0.60499 0.72569 1.27145 1.38231 1.44864 1.47040 1.54970 1.59321 2.03015 2.32730 2.59317 3.17736 3.37535 3.48457 3.61884 4.03644 4.30693 4.44971 4.45504 4.53634 4.65397 4.69884 4.72299 4.78099 5.20314 5.24498 5.46056 5.50625 5.67837 5.91038 6.05217 6.46968 6.64744 7.15500 7.58829 8.15398 8.72977 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.006230 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.383796 B = 4493.008336 C = 6110.626342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.358 5.358 3 C 0.105 3.895 4 C -0.292 4.292 5 C 0.508 3.492 6 O -0.604 6.604 7 N -0.561 5.561 8 C -0.323 4.323 9 H 0.084 0.916 10 C -0.012 4.012 11 N -0.919 5.919 12 Si 0.992 3.008 13 H -0.273 1.273 14 H -0.272 1.272 15 H -0.272 1.272 16 C 0.166 3.834 17 C -0.156 4.156 18 C -0.117 4.117 19 C -0.147 4.147 20 C -0.243 4.243 21 S 0.200 5.800 22 N -0.296 5.296 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.213 0.787 27 H 0.394 0.606 28 H 0.278 0.722 29 H 0.146 0.854 30 H 0.168 0.832 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -11.286 -0.189 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.138 5.138 3 C -0.045 4.045 4 C -0.308 4.308 5 C 0.297 3.703 6 O -0.492 6.492 7 N -0.197 5.197 8 C -0.453 4.453 9 H 0.102 0.898 10 C -0.212 4.212 11 N -0.560 5.560 12 Si 0.816 3.184 13 H -0.197 1.197 14 H -0.197 1.197 15 H -0.198 1.198 16 C -0.002 4.002 17 C -0.276 4.276 18 C -0.151 4.151 19 C -0.178 4.178 20 C -0.381 4.381 21 S 0.467 5.533 22 N -0.119 5.119 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.139 0.861 26 H 0.229 0.771 27 H 0.228 0.772 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.737 -11.151 -1.113 13.076 hybrid contribution 0.071 0.597 0.933 1.110 sum -6.666 -10.554 -0.180 12.484 Atomic orbital electron populations 1.22443 0.70493 1.06785 1.05448 1.48451 1.08498 1.02150 1.54737 1.23294 0.89560 0.94683 0.96949 1.21562 0.93836 0.92817 1.22562 1.17370 0.88024 0.82120 0.82798 1.90526 1.27139 1.73710 1.57853 1.41700 1.09277 1.04061 1.64615 1.19747 0.88227 0.88323 1.48979 0.89812 1.26006 1.00918 0.97855 0.96417 1.69661 1.22893 1.13102 1.50295 0.84877 0.77658 0.77673 0.78204 1.19708 1.19686 1.19764 1.20862 0.90632 0.90358 0.98330 1.21945 0.96681 0.98782 1.10148 1.20485 0.99948 0.93327 1.01363 1.20172 0.92257 1.02711 1.02621 1.26596 1.05673 0.98799 1.07001 1.85336 1.05616 1.13843 1.48460 1.77234 1.00609 1.08014 1.26039 0.88733 0.88070 0.86122 0.77072 0.77151 0.91287 0.83624 0.81435 0.79399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.39 127.77 1.46 2.77 16 2 N -0.36 -10.20 3.95 -367.86 -1.45 -11.65 16 3 C 0.10 3.40 10.94 84.30 0.92 4.32 16 4 C -0.29 -12.40 6.32 -18.75 -0.12 -12.52 16 5 C 0.51 25.79 7.76 86.58 0.67 26.46 16 6 O -0.60 -33.42 12.52 -4.20 -0.05 -33.47 16 7 N -0.56 -29.12 5.27 -310.23 -1.64 -30.76 16 8 C -0.32 -18.18 9.68 84.07 0.81 -17.37 16 9 H 0.08 5.01 7.15 -2.91 -0.02 4.99 16 10 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 11 N -0.92 -48.37 13.05 21.67 0.28 -48.09 16 12 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 C 0.17 6.75 7.24 43.91 0.32 7.07 16 17 C -0.16 -6.10 6.11 23.99 0.15 -5.95 16 18 C -0.12 -3.79 10.10 21.42 0.22 -3.58 16 19 C -0.15 -4.05 10.16 21.15 0.21 -3.83 16 20 C -0.24 -7.05 11.22 66.78 0.75 -6.30 16 21 S 0.20 7.73 19.79 -56.49 -1.12 6.61 16 22 N -0.30 -10.51 12.51 -44.74 -0.56 -11.07 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.12 1.14 8.13 -2.39 -0.02 1.12 16 26 H 0.21 5.47 7.48 -2.91 -0.02 5.45 16 27 H 0.39 19.05 6.85 -92.70 -0.63 18.41 16 28 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.19 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -72.10 292.76 3.89 -68.21 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.54 Total: 24.83 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.86 Total: -9.09 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.37 Total: -101.57 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.12 Total: 6.61 kcal Total: -72.10 3.89 -68.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160277499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.097 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds