Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36973 * 119.99694 * 2 1 4 4 H 1.08002 * 119.99423 * 188.12743 * 3 2 1 5 5 C 1.38975 * 120.00319 * 8.13381 * 3 2 1 6 6 N 1.31415 * 120.00167 * 8.26290 * 5 3 2 7 7 Si 1.86798 * 119.99863 * 188.25902 * 5 3 2 8 8 H 1.48498 * 109.47466 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47064 * 120.00167 * 7 5 3 10 10 H 1.48498 * 109.47170 * 239.99865 * 7 5 3 11 11 C 1.34777 * 119.99959 * 180.02562 * 2 1 3 12 12 O 1.21650 * 119.99885 * 184.10896 * 11 2 1 13 13 C 1.47149 * 119.99706 * 4.10660 * 11 2 1 14 14 C 1.38098 * 126.82439 * 309.83984 * 13 11 2 15 15 N 1.34114 * 107.87403 * 180.27996 * 14 13 11 16 16 H 0.97002 * 125.15051 * 179.70996 * 15 14 13 17 17 N 1.39764 * 109.70267 * 359.74363 * 15 14 13 18 18 C 1.31383 * 109.10188 * 359.97438 * 17 15 14 19 19 C 1.48262 * 126.51712 * 179.97438 * 18 17 15 20 20 C 1.39405 * 122.77915 * 324.99911 * 19 18 17 21 21 C 1.33034 * 114.92124 * 180.02562 * 20 19 18 22 22 S 1.75816 * 109.94436 * 0.02562 * 21 20 19 23 23 C 1.34631 * 122.78216 * 145.05375 * 19 18 17 24 24 H 1.08997 * 109.46929 * 174.14238 * 1 2 3 25 25 H 1.08997 * 109.47279 * 294.14611 * 1 2 3 26 26 H 1.08999 * 109.47004 * 54.14553 * 1 2 3 27 27 H 0.96995 * 120.00560 * 180.02562 * 6 5 3 28 28 H 1.08004 * 126.06590 * 359.97438 * 14 13 11 29 29 H 1.08004 * 122.54157 * 0.07271 * 20 19 18 30 30 H 1.07997 * 125.03425 * 180.02562 * 21 20 19 31 31 H 1.08003 * 125.23017 * 0.21628 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1863 0.0000 4 1 3.2217 1.1909 -0.1322 5 6 1.4654 2.3838 0.1703 6 7 0.1914 2.3725 0.4924 7 14 2.3565 4.0095 -0.0586 8 1 3.7742 3.7508 -0.4170 9 1 1.7047 4.7824 -1.1462 10 1 2.2989 4.7877 1.2048 11 6 2.1389 -1.1672 -0.0005 12 8 3.3531 -1.1686 0.0750 13 6 1.4059 -2.4398 -0.0924 14 6 0.3285 -2.8319 0.6774 15 7 -0.0374 -4.0590 0.2788 16 1 -0.7677 -4.5741 0.6560 17 7 0.7933 -4.4836 -0.7620 18 6 1.6724 -3.5424 -1.0216 19 6 2.7365 -3.5893 -2.0530 20 6 3.4110 -4.7622 -2.3888 21 6 4.3365 -4.6254 -3.3346 22 16 4.4067 -2.9514 -3.8674 23 6 3.1320 -2.5025 -2.7422 24 1 -0.3633 -1.0223 -0.1049 25 1 -0.3633 0.4204 0.9377 26 1 -0.3633 0.6019 -0.8329 27 1 -0.2864 3.2082 0.6109 28 1 -0.1341 -2.2548 1.4645 29 1 3.1978 -5.7103 -1.9174 30 1 4.9535 -5.4244 -3.7184 31 1 2.7313 -1.5071 -2.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189209277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = 94.650430 kcal Electronic energy + Delta-G solvation = -18887.471237 eV Core-core repulsion = 15877.336679 eV Total energy + Delta-G solvation = -3010.134558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69089 -37.92640 -37.43632 -34.60270 -31.68789 -31.48509 -29.81383 -28.83676 -26.22641 -24.68496 -24.10118 -21.89833 -21.18500 -19.26971 -18.21583 -17.30090 -17.13046 -16.77471 -15.71837 -15.07109 -14.43221 -14.38621 -13.96831 -13.73335 -13.42215 -12.80538 -12.63845 -12.41928 -12.15445 -12.14921 -11.61930 -11.34130 -11.03373 -10.90091 -10.66709 -10.53312 -10.31922 -10.20896 -9.58947 -9.07429 -8.57337 -8.43880 -8.16527 -7.82231 -7.79613 -6.25409 -3.80620 1.20842 1.89221 2.04886 2.21200 2.43669 3.07565 3.15140 3.24972 3.32334 3.39893 4.08818 4.16284 4.72493 5.07685 5.09637 5.26207 5.31710 5.53384 5.68523 5.91681 6.02558 6.09278 6.19685 6.40516 6.58294 6.68002 6.82216 7.04722 7.38350 7.46114 7.56649 7.86907 8.10777 8.51403 9.20533 9.45902 10.04010 10.69288 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.006424 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.122308 B = 4357.826307 C = 5623.506517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.440 5.440 3 C -0.295 4.295 4 H 0.105 0.895 5 C 0.026 3.974 6 N -0.887 5.887 7 Si 0.929 3.071 8 H -0.267 1.267 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.508 3.492 12 O -0.584 6.584 13 C -0.228 4.228 14 C 0.079 3.921 15 N -0.475 5.475 16 H 0.437 0.563 17 N -0.292 5.292 18 C 0.169 3.831 19 C -0.035 4.035 20 C -0.105 4.105 21 C -0.229 4.229 22 S 0.106 5.894 23 C -0.151 4.151 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.265 0.735 28 H 0.185 0.815 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -10.420 -4.233 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.423 4.423 4 H 0.123 0.877 5 C -0.176 4.176 6 N -0.528 5.528 7 Si 0.756 3.244 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.295 3.705 12 O -0.469 6.469 13 C -0.243 4.243 14 C -0.069 4.069 15 N -0.182 5.182 16 H 0.281 0.719 17 N -0.115 5.115 18 C -0.001 4.001 19 C -0.049 4.049 20 C -0.136 4.136 21 C -0.364 4.364 22 S 0.369 5.631 23 C -0.289 4.289 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.202 0.798 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.163 -10.588 -5.532 11.947 hybrid contribution -0.950 0.727 1.617 2.011 sum -1.113 -9.861 -3.915 10.668 Atomic orbital electron populations 1.21944 0.80681 0.96964 1.04288 1.43598 1.05932 1.04541 1.61720 1.19846 0.94110 0.82019 1.46365 0.87676 1.25311 0.95931 0.99755 0.96606 1.70102 1.08649 1.27210 1.46820 0.85807 0.79632 0.81105 0.77895 1.19161 1.20694 1.20743 1.16832 0.86794 0.81781 0.85075 1.90630 1.13357 1.86674 1.56274 1.21654 1.01298 0.98740 1.02612 1.22994 0.96403 0.87372 1.00115 1.45752 1.28933 1.14180 1.29328 0.71949 1.77127 1.06267 1.22147 1.05923 1.21245 0.93615 0.90799 0.94482 1.16620 0.97724 0.93130 0.97397 1.20024 0.96553 0.98736 0.98293 1.25313 1.06064 0.99849 1.05162 1.84085 1.36710 1.02739 1.39560 1.25819 1.00411 1.02741 0.99909 0.95194 0.90153 0.92715 0.92442 0.79812 0.84217 0.81922 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.33 8.35 59.85 0.50 2.83 16 2 N -0.44 -11.18 3.02 -123.52 -0.37 -11.55 16 3 C -0.30 -8.10 9.52 -14.98 -0.14 -8.24 16 4 H 0.11 3.02 7.22 -52.49 -0.38 2.65 16 5 C 0.03 0.67 5.38 -17.46 -0.09 0.57 16 6 N -0.89 -22.85 9.69 55.50 0.54 -22.31 16 7 Si 0.93 20.52 29.56 -169.99 -5.03 15.50 16 8 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.51 12.59 6.24 -12.64 -0.08 12.51 16 12 O -0.58 -16.41 16.33 5.23 0.09 -16.33 16 13 C -0.23 -4.70 5.28 -102.95 -0.54 -5.24 16 14 C 0.08 1.27 9.62 -16.61 -0.16 1.11 16 15 N -0.47 -6.67 7.20 30.83 0.22 -6.45 16 16 H 0.44 4.16 8.96 -182.85 -1.64 2.52 16 17 N -0.29 -5.04 12.66 34.58 0.44 -4.60 16 18 C 0.17 3.28 7.07 -80.55 -0.57 2.71 16 19 C -0.03 -0.65 5.74 -106.62 -0.61 -1.26 16 20 C -0.11 -1.63 10.01 -40.95 -0.41 -2.04 16 21 C -0.23 -3.08 11.19 28.93 0.32 -2.76 16 22 S 0.11 1.55 23.32 -107.50 -2.51 -0.96 16 23 C -0.15 -2.77 10.07 29.46 0.30 -2.48 16 24 H 0.03 0.57 4.43 -51.93 -0.23 0.34 16 25 H 0.08 1.86 6.71 -51.93 -0.35 1.51 16 26 H 0.05 1.29 7.47 -51.93 -0.39 0.90 16 27 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.19 2.49 7.60 -52.48 -0.40 2.09 16 29 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 30 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.17 3.43 7.39 -52.48 -0.39 3.05 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -32.18 285.80 -7.56 -39.74 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.75 Total: 4.94 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.49 Total: -2.29 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.82 Total: -44.92 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.18 -7.56 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189209277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.388 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds