Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36973 * 119.99694 * 2 1 4 4 H 1.08002 * 119.99423 * 188.12743 * 3 2 1 5 5 C 1.38975 * 120.00319 * 8.13381 * 3 2 1 6 6 N 1.31415 * 120.00167 * 8.26290 * 5 3 2 7 7 Si 1.86798 * 119.99863 * 188.25902 * 5 3 2 8 8 H 1.48498 * 109.47466 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47064 * 120.00167 * 7 5 3 10 10 H 1.48498 * 109.47170 * 239.99865 * 7 5 3 11 11 C 1.34777 * 119.99959 * 180.02562 * 2 1 3 12 12 O 1.21650 * 119.99885 * 184.10896 * 11 2 1 13 13 C 1.47149 * 119.99706 * 4.10660 * 11 2 1 14 14 C 1.38098 * 126.82439 * 309.83984 * 13 11 2 15 15 N 1.34114 * 107.87403 * 180.27996 * 14 13 11 16 16 H 0.97002 * 125.15051 * 179.70996 * 15 14 13 17 17 N 1.39764 * 109.70267 * 359.74363 * 15 14 13 18 18 C 1.31383 * 109.10188 * 359.97438 * 17 15 14 19 19 C 1.48262 * 126.51712 * 179.97438 * 18 17 15 20 20 C 1.39405 * 122.77915 * 324.99911 * 19 18 17 21 21 C 1.33034 * 114.92124 * 180.02562 * 20 19 18 22 22 S 1.75816 * 109.94436 * 0.02562 * 21 20 19 23 23 C 1.34631 * 122.78216 * 145.05375 * 19 18 17 24 24 H 1.08997 * 109.46929 * 174.14238 * 1 2 3 25 25 H 1.08997 * 109.47279 * 294.14611 * 1 2 3 26 26 H 1.08999 * 109.47004 * 54.14553 * 1 2 3 27 27 H 0.96995 * 120.00560 * 180.02562 * 6 5 3 28 28 H 1.08004 * 126.06590 * 359.97438 * 14 13 11 29 29 H 1.08004 * 122.54157 * 0.07271 * 20 19 18 30 30 H 1.07997 * 125.03425 * 180.02562 * 21 20 19 31 31 H 1.08003 * 125.23017 * 0.21628 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1863 0.0000 4 1 3.2217 1.1909 -0.1322 5 6 1.4654 2.3838 0.1703 6 7 0.1914 2.3725 0.4924 7 14 2.3565 4.0095 -0.0586 8 1 3.7742 3.7508 -0.4170 9 1 1.7047 4.7824 -1.1462 10 1 2.2989 4.7877 1.2048 11 6 2.1389 -1.1672 -0.0005 12 8 3.3531 -1.1686 0.0750 13 6 1.4059 -2.4398 -0.0924 14 6 0.3285 -2.8319 0.6774 15 7 -0.0374 -4.0590 0.2788 16 1 -0.7677 -4.5741 0.6560 17 7 0.7933 -4.4836 -0.7620 18 6 1.6724 -3.5424 -1.0216 19 6 2.7365 -3.5893 -2.0530 20 6 3.4110 -4.7622 -2.3888 21 6 4.3365 -4.6254 -3.3346 22 16 4.4067 -2.9514 -3.8674 23 6 3.1320 -2.5025 -2.7422 24 1 -0.3633 -1.0223 -0.1049 25 1 -0.3633 0.4204 0.9377 26 1 -0.3633 0.6019 -0.8329 27 1 -0.2864 3.2082 0.6109 28 1 -0.1341 -2.2548 1.4645 29 1 3.1978 -5.7103 -1.9174 30 1 4.9535 -5.4244 -3.7184 31 1 2.7313 -1.5071 -2.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189209277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = 72.810232 kcal Electronic energy + Delta-G solvation = -18888.418299 eV Core-core repulsion = 15877.336679 eV Total energy + Delta-G solvation = -3011.081620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.10260 -39.80609 -38.67804 -36.59029 -33.65171 -32.80590 -31.33831 -30.13248 -28.11480 -26.52924 -25.44491 -23.47635 -22.52625 -20.80867 -19.52963 -19.05495 -18.54984 -18.34564 -17.53882 -16.31396 -16.29469 -15.95775 -15.75399 -15.36014 -14.84218 -14.32715 -14.05227 -13.90459 -13.67009 -13.48283 -13.34904 -13.06519 -12.83213 -12.66036 -12.28198 -12.11971 -11.98200 -11.81447 -11.04269 -10.88665 -10.45945 -9.83172 -9.70789 -9.59116 -9.11746 -8.23265 -5.87682 -0.08177 0.66620 0.73283 0.94575 1.07904 1.39728 1.42357 1.55858 1.84673 1.99384 2.27606 2.37746 3.10728 3.20425 3.55652 3.81759 4.11389 4.25062 4.37799 4.52669 4.57853 4.65944 4.72232 4.95835 5.17863 5.29242 5.41110 5.44720 5.46738 5.54013 6.09001 6.31475 6.50628 6.58144 7.20507 7.52031 8.10205 8.69246 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.006424 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.122308 B = 4357.826307 C = 5623.506517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.454 5.454 3 C -0.335 4.335 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.895 5.895 7 Si 0.989 3.011 8 H -0.276 1.276 9 H -0.269 1.269 10 H -0.271 1.271 11 C 0.511 3.489 12 O -0.630 6.630 13 C -0.280 4.280 14 C 0.111 3.889 15 N -0.445 5.445 16 H 0.461 0.539 17 N -0.291 5.291 18 C 0.155 3.845 19 C -0.048 4.048 20 C -0.126 4.126 21 C -0.202 4.202 22 S 0.140 5.860 23 C -0.193 4.193 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.272 0.728 28 H 0.216 0.784 29 H 0.156 0.844 30 H 0.206 0.794 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -11.828 -4.302 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.172 5.172 3 C -0.463 4.463 4 H 0.094 0.906 5 C -0.204 4.204 6 N -0.535 5.535 7 Si 0.813 3.187 8 H -0.201 1.201 9 H -0.194 1.194 10 H -0.196 1.196 11 C 0.300 3.700 12 O -0.518 6.518 13 C -0.295 4.295 14 C -0.039 4.039 15 N -0.154 5.154 16 H 0.310 0.690 17 N -0.114 5.114 18 C -0.014 4.014 19 C -0.063 4.063 20 C -0.156 4.156 21 C -0.337 4.337 22 S 0.403 5.597 23 C -0.332 4.332 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.233 0.767 29 H 0.174 0.826 30 H 0.223 0.777 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.987 -12.033 -5.599 13.309 hybrid contribution -0.746 1.080 1.646 2.105 sum -1.733 -10.953 -3.953 11.773 Atomic orbital electron populations 1.21813 0.79026 0.98580 1.02914 1.43773 1.07013 1.04329 1.62071 1.19740 0.93416 0.83858 1.49261 0.90592 1.26007 0.96779 1.02074 0.95582 1.70174 1.09120 1.28294 1.45929 0.84927 0.78095 0.77296 0.78370 1.20069 1.19397 1.19634 1.17377 0.86485 0.82922 0.83204 1.90567 1.15622 1.87661 1.57933 1.21394 1.04071 0.97949 1.06076 1.23267 0.94181 0.87608 0.98845 1.45775 1.28433 1.13490 1.27728 0.68999 1.77092 1.06170 1.21533 1.06612 1.21449 0.94448 0.90657 0.94876 1.16983 0.97945 0.94208 0.97178 1.20134 0.97437 0.98366 0.99665 1.25833 1.04734 0.99943 1.03225 1.83876 1.34514 1.03508 1.37778 1.25695 1.03104 1.01672 1.02713 0.91845 0.90950 0.94620 0.91808 0.76732 0.82627 0.77720 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.37 8.35 127.77 1.07 6.43 16 2 N -0.45 -23.96 3.02 -662.93 -2.00 -25.96 16 3 C -0.33 -19.20 9.52 84.07 0.80 -18.40 16 4 H 0.08 4.69 7.22 -2.91 -0.02 4.67 16 5 C 0.00 -0.18 5.38 84.93 0.46 0.27 16 6 N -0.90 -46.19 9.69 21.67 0.21 -45.98 16 7 Si 0.99 42.57 29.56 68.60 2.03 44.60 16 8 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 C 0.51 26.40 6.24 86.58 0.54 26.94 16 12 O -0.63 -37.47 16.33 -4.19 -0.07 -37.54 16 13 C -0.28 -11.58 5.28 -18.78 -0.10 -11.68 16 14 C 0.11 3.34 9.62 84.31 0.81 4.15 16 15 N -0.44 -11.16 7.20 -56.36 -0.41 -11.56 16 16 H 0.46 6.90 8.96 -213.53 -1.91 4.98 16 17 N -0.29 -9.52 12.66 -44.51 -0.56 -10.08 16 18 C 0.16 6.02 7.07 44.07 0.31 6.33 16 19 C -0.05 -1.82 5.74 -21.16 -0.12 -1.94 16 20 C -0.13 -3.75 10.01 21.39 0.21 -3.54 16 21 C -0.20 -4.97 11.19 66.66 0.75 -4.22 16 22 S 0.14 4.02 23.32 -56.49 -1.32 2.71 16 23 C -0.19 -7.48 10.07 66.99 0.67 -6.81 16 24 H 0.06 2.35 4.43 -2.39 -0.01 2.34 16 25 H 0.07 3.34 6.71 -2.39 -0.02 3.33 16 26 H 0.03 1.70 7.47 -2.39 -0.02 1.68 16 27 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 28 H 0.22 5.09 7.60 -2.91 -0.02 5.07 16 29 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 31 H 0.14 6.07 7.39 -2.91 -0.02 6.05 16 Total: -1.00 -73.42 285.80 2.56 -70.86 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.72 Total: 15.41 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.40 Total: -2.45 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -2.76 Total: -93.59 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.07 Total: -37.54 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.32 Total: 2.71 kcal Total: -73.42 2.56 -70.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189209277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.673 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds