Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 5 5 C 1.34770 * 120.00256 * 154.99855 * 4 3 2 6 6 O 1.21582 * 120.00147 * 0.02562 * 5 4 3 7 7 C 1.47671 * 120.00183 * 179.97438 * 5 4 3 8 8 C 1.40783 * 119.45962 * 0.02562 * 7 5 4 9 9 C 1.35100 * 121.43519 * 179.97438 * 8 7 5 10 10 C 1.41936 * 120.26052 * 0.02562 * 9 8 7 11 11 C 1.46122 * 118.83386 * 359.97438 * 10 9 8 12 12 C 1.37984 * 119.46441 * 179.72536 * 7 5 4 13 13 N 1.32492 * 110.46614 * 180.02562 * 11 10 9 14 14 S 1.55535 * 109.37726 * 0.02562 * 13 11 10 15 15 N 1.32277 * 130.72333 * 180.02562 * 10 9 8 16 16 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 17 17 N 1.27942 * 120.00249 * 235.00408 * 16 3 2 18 18 Si 1.86805 * 119.99689 * 55.00261 * 16 3 2 19 19 H 1.48493 * 109.47166 * 89.99798 * 18 16 3 20 20 H 1.48499 * 109.46895 * 210.00170 * 18 16 3 21 21 H 1.48507 * 109.46902 * 329.99805 * 18 16 3 22 22 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 23 23 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 24 24 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 26 26 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 27 27 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 28 28 H 0.97005 * 119.99374 * 334.99789 * 4 3 2 29 29 H 1.08002 * 119.28358 * 359.97438 * 8 7 5 30 30 H 1.07998 * 119.87139 * 180.02562 * 9 8 7 31 31 H 1.07997 * 120.15114 * 0.02562 * 12 7 5 32 32 H 0.97000 * 119.99726 * 180.02562 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6524 2.0975 -1.2518 5 6 1.5256 3.4384 -1.2995 6 8 1.7332 4.1045 -0.3038 7 6 1.1355 4.0987 -2.5614 8 6 0.8983 3.3165 -3.7077 9 6 0.5390 3.8787 -4.8824 10 6 0.3922 5.2867 -4.9862 11 6 0.6355 6.1097 -3.8036 12 6 1.0033 5.4718 -2.5963 13 7 0.4517 7.3912 -4.0853 14 16 0.0427 7.5378 -5.5787 15 7 0.0544 6.0455 -6.0157 16 6 3.5419 1.4443 0.1239 17 7 4.1057 2.1067 1.0622 18 14 4.5806 0.4795 -1.0926 19 1 4.9231 1.3468 -2.2482 20 1 5.8282 0.0255 -0.4273 21 1 3.8160 -0.7011 -1.5692 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6053 1.9815 0.8418 28 1 1.4871 1.5661 -2.0463 29 1 1.0058 2.2436 -3.6465 30 1 0.3629 3.2545 -5.7459 31 1 1.1846 6.0570 -1.7069 32 1 5.0724 2.1081 1.1417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271906873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = 66.707710 kcal Electronic energy + Delta-G solvation = -18920.640773 eV Core-core repulsion = 15895.638788 eV Total energy + Delta-G solvation = -3025.001984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 278.070 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15300 -40.98326 -38.13902 -37.14052 -35.43726 -35.02123 -33.31082 -31.43312 -29.44591 -27.72956 -24.58481 -23.22516 -22.92056 -22.08106 -21.17250 -20.54142 -19.21314 -18.05800 -18.01637 -17.06465 -16.99601 -16.47787 -16.32935 -15.54551 -15.24890 -15.16010 -14.69059 -14.64196 -14.35872 -13.64253 -13.38284 -13.29305 -12.90157 -12.79116 -12.76186 -12.46188 -12.26211 -12.12700 -12.07239 -11.83538 -11.79066 -11.33583 -11.11814 -10.64770 -9.91350 -9.70841 -9.57550 -1.38377 -0.10703 0.29607 0.54165 0.64168 0.75129 1.06595 1.41322 1.63921 1.66690 1.85622 2.13532 2.55326 2.91117 3.42482 3.57637 3.68272 3.81639 3.91214 4.01256 4.09655 4.26345 4.50588 4.64774 4.75329 4.79015 4.86354 4.95460 4.99661 5.06679 5.13240 5.18469 5.23210 5.41893 5.50948 5.66970 6.43246 6.89746 7.13058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.174 3.826 4 N -0.698 5.698 5 C 0.561 3.439 6 O -0.561 6.561 7 C -0.107 4.107 8 C -0.065 4.065 9 C -0.062 4.062 10 C 0.075 3.925 11 C 0.046 3.954 12 C -0.011 4.011 13 N -0.623 5.623 14 S 0.886 5.114 15 N -0.621 5.621 16 C -0.030 4.030 17 N -0.644 5.644 18 Si 0.949 3.051 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.187 1.187 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.421 0.579 29 H 0.187 0.813 30 H 0.174 0.826 31 H 0.137 0.863 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -7.001 -5.590 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.068 3.932 4 N -0.353 5.353 5 C 0.349 3.651 6 O -0.440 6.440 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.086 4.086 10 C -0.081 4.081 11 C -0.110 4.110 12 C -0.037 4.037 13 N -0.477 5.477 14 S 0.932 5.068 15 N -0.473 5.473 16 C -0.279 4.279 17 N -0.257 5.257 18 Si 0.763 3.237 19 H -0.173 1.173 20 H -0.188 1.188 21 H -0.108 1.108 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.262 0.738 29 H 0.204 0.796 30 H 0.191 0.809 31 H 0.154 0.846 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.374 -4.525 -5.888 7.552 hybrid contribution 1.014 -1.004 0.904 1.689 sum -0.360 -5.528 -4.984 7.452 Atomic orbital electron populations 1.21771 0.94167 1.02798 1.02273 1.21942 0.97407 0.92035 1.05507 1.20174 0.89708 0.95762 0.87543 1.45717 1.69290 1.05916 1.14366 1.18272 0.76604 0.82827 0.87439 1.90867 1.50808 1.65009 1.37288 1.19667 1.04403 0.92884 0.94750 1.21076 0.96275 1.01982 0.89516 1.20538 0.99734 0.88142 1.00217 1.21781 1.01439 0.98325 0.86590 1.21271 1.05336 0.86623 0.97732 1.20620 0.94870 0.93855 0.94392 1.72122 1.26009 1.24169 1.25410 1.78376 1.34128 1.03566 0.90706 1.72126 1.27681 1.12492 1.35014 1.31350 1.01888 0.95954 0.98665 1.68232 1.18685 1.16136 1.22688 0.85506 0.78756 0.81321 0.78146 1.17322 1.18816 1.10774 0.93889 0.91442 0.90984 0.87861 0.89142 0.90015 0.73846 0.79631 0.80874 0.84561 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.18 9.80 71.98 0.71 1.88 16 2 C -0.13 1.07 4.90 30.59 0.15 1.22 16 3 C 0.17 -0.28 2.16 44.25 0.10 -0.18 16 4 N -0.70 2.88 4.05 -449.14 -1.82 1.06 16 5 C 0.56 1.97 7.71 86.74 0.67 2.64 16 6 O -0.56 -7.69 15.92 -3.97 -0.06 -7.75 16 7 C -0.11 -0.09 5.85 -20.22 -0.12 -0.21 16 8 C -0.06 0.43 9.39 22.17 0.21 0.64 16 9 C -0.06 0.23 10.05 22.46 0.23 0.46 16 10 C 0.08 0.27 7.16 42.04 0.30 0.57 16 11 C 0.05 0.32 7.15 41.87 0.30 0.61 16 12 C -0.01 -0.07 9.65 22.99 0.22 0.15 16 13 N -0.62 -4.50 11.45 -72.75 -0.83 -5.33 16 14 S 0.89 0.43 23.60 -56.49 -1.33 -0.90 16 15 N -0.62 -2.50 11.43 -72.56 -0.83 -3.33 16 16 C -0.03 -0.01 5.06 88.68 0.45 0.44 16 17 N -0.64 -3.83 13.80 24.11 0.33 -3.50 16 18 Si 0.95 -4.44 27.93 68.60 1.92 -2.52 16 19 H -0.25 0.64 7.11 99.48 0.71 1.34 16 20 H -0.26 0.36 7.11 99.48 0.71 1.06 16 21 H -0.19 1.97 6.32 99.48 0.63 2.60 16 22 H 0.04 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.07 -0.63 7.75 -2.39 -0.02 -0.65 16 24 H 0.07 -0.66 8.14 -2.39 -0.02 -0.67 16 25 H 0.10 -1.38 6.41 -2.39 -0.02 -1.39 16 26 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.08 0.43 7.54 -2.39 -0.02 0.41 16 28 H 0.42 -5.39 6.54 -92.70 -0.61 -5.99 16 29 H 0.19 -3.07 6.29 -2.91 -0.02 -3.09 16 30 H 0.17 -1.57 8.06 -2.91 -0.02 -1.60 16 31 H 0.14 1.25 7.57 -2.91 -0.02 1.23 16 32 H 0.34 0.98 8.23 -92.71 -0.76 0.21 16 Total: 0.00 -22.62 290.40 1.08 -21.55 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: 0.50 Total: -7.49 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 3.21 Total: 8.22 kcal Atomic # 7 Polarization: -7.95 SS G_CDS: -3.15 Total: -11.10 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.06 Total: -7.75 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 1.92 Total: -2.52 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.33 Total: -0.90 kcal Total: -22.62 1.08 -21.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271906873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.254 kcal (2) G-P(sol) polarization free energy of solvation -22.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds