Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47077 * 2 1 4 4 C 1.50700 * 109.47060 * 240.00039 * 2 1 3 5 5 H 1.08006 * 119.99848 * 240.00785 * 4 2 1 6 6 C 1.37880 * 120.00191 * 59.99621 * 4 2 1 7 7 N 1.31507 * 119.99603 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00002 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46845 * 60.00488 * 8 6 4 10 10 H 1.48499 * 109.47041 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47546 * 300.00524 * 8 6 4 12 12 N 1.46503 * 109.46999 * 119.99977 * 2 1 3 13 13 C 1.34778 * 120.00054 * 275.00053 * 12 2 1 14 14 O 1.21576 * 119.99668 * 359.97438 * 13 12 2 15 15 C 1.47666 * 119.99826 * 179.97438 * 13 12 2 16 16 C 1.40776 * 119.46570 * 359.97438 * 15 13 12 17 17 C 1.35102 * 121.43926 * 180.02562 * 16 15 13 18 18 C 1.41935 * 120.25891 * 0.02562 * 17 16 15 19 19 C 1.46115 * 118.83188 * 359.97438 * 18 17 16 20 20 C 1.37985 * 119.45930 * 179.97438 * 15 13 12 21 21 N 1.32495 * 110.46762 * 180.02562 * 19 18 17 22 22 S 1.55537 * 109.37576 * 359.97438 * 21 19 18 23 23 N 1.32275 * 130.72321 * 180.02562 * 18 17 16 24 24 H 1.08998 * 109.47248 * 300.00356 * 1 2 3 25 25 H 1.09000 * 109.47007 * 59.99934 * 1 2 3 26 26 H 1.08999 * 109.47077 * 180.02562 * 1 2 3 27 27 H 0.97010 * 119.99878 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99791 * 94.99753 * 12 2 1 29 29 H 1.08001 * 119.28288 * 0.04165 * 16 15 13 30 30 H 1.08002 * 119.87057 * 180.02562 * 17 16 15 31 31 H 1.07995 * 120.15282 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0078 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8583 1.1615 2.4116 15 6 2.6387 -0.7146 3.5630 16 6 2.9692 -2.0809 3.4873 17 6 3.4221 -2.7571 4.5656 18 6 3.5752 -2.0958 5.8121 19 6 3.2355 -0.6777 5.9038 20 6 2.7667 -0.0153 4.7456 21 7 3.4400 -0.2309 7.1343 22 16 3.9677 -1.3924 8.0240 23 7 3.9946 -2.5471 6.9827 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1613 -3.4844 28 1 2.2490 -1.6318 1.1526 29 1 2.8586 -2.5998 2.5466 30 1 3.6685 -3.8051 4.4788 31 1 2.5084 1.0325 4.7870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271913072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 17.117464 kcal Electronic energy + Delta-G solvation = -18161.654995 eV Core-core repulsion = 15148.158355 eV Total energy + Delta-G solvation = -3013.496640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.06375 -40.60631 -37.22080 -36.71277 -34.96990 -34.31773 -31.49142 -31.05523 -28.60395 -27.29961 -24.72076 -23.36276 -22.60950 -21.42457 -20.57924 -19.45456 -18.21980 -17.80324 -17.27368 -16.93515 -16.40428 -16.25003 -15.82834 -15.12224 -15.03496 -14.43303 -14.28673 -13.70698 -13.49557 -13.02808 -12.93497 -12.77550 -12.74776 -12.72044 -12.64633 -12.22761 -12.12917 -12.01840 -11.74992 -11.08871 -10.93472 -10.55960 -9.93293 -9.71406 -9.50135 -8.14055 -6.31546 -1.34994 -0.05044 0.32045 0.59554 0.72476 1.49434 1.51369 1.58915 1.77957 2.32260 2.54584 2.66233 2.95859 3.17037 3.73823 3.75491 3.85313 3.99471 4.14296 4.66823 4.78083 4.82974 4.95720 5.03423 5.11586 5.15655 5.20778 5.45806 5.60609 5.68927 5.73065 5.92391 6.11802 6.75130 6.90247 7.33122 7.49163 8.92234 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.042322 B = 0.003598 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.435688 B = 7779.243071 C = 8227.613800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.079 0.921 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.262 1.262 10 H -0.290 1.290 11 H -0.271 1.271 12 N -0.691 5.691 13 C 0.542 3.458 14 O -0.593 6.593 15 C -0.102 4.102 16 C -0.070 4.070 17 C -0.056 4.056 18 C 0.076 3.924 19 C 0.050 3.950 20 C -0.012 4.012 21 N -0.621 5.621 22 S 0.905 5.095 23 N -0.617 5.617 24 H 0.012 0.988 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -10.580 18.508 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.097 0.903 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.340 5.340 13 C 0.329 3.671 14 O -0.476 6.476 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.080 4.080 19 C -0.105 4.105 20 C -0.038 4.038 21 N -0.476 5.476 22 S 0.951 5.049 23 N -0.470 5.470 24 H 0.031 0.969 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.726 -9.664 20.565 23.697 hybrid contribution -0.378 0.029 -2.666 2.693 sum 6.348 -9.635 17.899 21.296 Atomic orbital electron populations 1.21919 0.98130 0.99747 0.99656 1.18422 0.91256 0.92115 0.81605 0.98064 1.21529 1.32691 1.13736 0.90539 0.90309 1.25796 0.94851 0.95550 1.02349 1.70052 1.37007 1.23959 1.24660 0.85388 0.78641 0.78770 0.77481 1.18643 1.21532 1.19562 1.46182 1.64213 1.14381 1.09215 1.18610 0.78032 0.86293 0.84117 1.90729 1.53296 1.17773 1.85808 1.19704 1.03353 0.95544 0.92617 1.20988 0.96403 0.91477 1.00526 1.20420 0.99486 1.01467 0.86688 1.21535 1.01001 0.91600 0.93837 1.21051 1.04975 0.93135 0.91357 1.20529 0.95141 1.00041 0.88113 1.72037 1.25956 1.39622 1.10016 1.78052 1.31491 0.79172 1.16214 1.72043 1.27896 1.38718 1.08363 0.96903 0.91410 0.93712 0.92588 0.75455 0.81528 0.80628 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.67 2.56 44.24 0.11 13.78 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -28.01 8.73 25.60 0.22 -27.78 16 5 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 8 Si 0.97 40.92 29.54 68.60 2.03 42.94 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 N -0.69 -27.70 5.02 -449.14 -2.25 -29.95 16 13 C 0.54 21.83 7.72 86.73 0.67 22.50 16 14 O -0.59 -29.43 15.92 -3.95 -0.06 -29.49 16 15 C -0.10 -3.13 5.85 -20.23 -0.12 -3.25 16 16 C -0.07 -1.54 9.39 22.17 0.21 -1.33 16 17 C -0.06 -1.10 10.06 22.46 0.23 -0.88 16 18 C 0.08 1.78 7.16 42.04 0.30 2.09 16 19 C 0.05 1.35 7.15 41.87 0.30 1.64 16 20 C -0.01 -0.37 9.65 22.99 0.22 -0.15 16 21 N -0.62 -15.15 11.45 -72.74 -0.83 -15.98 16 22 S 0.91 14.07 23.60 -56.49 -1.33 12.74 16 23 N -0.62 -12.74 11.43 -72.56 -0.83 -13.57 16 24 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 26 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 28 H 0.41 13.02 6.48 -92.71 -0.60 12.41 16 29 H 0.17 2.82 6.29 -2.91 -0.02 2.80 16 30 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.14 4.55 7.57 -2.91 -0.02 4.53 16 Total: -1.00 -70.23 286.78 0.81 -69.42 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.59 Total: 13.94 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 3.26 Total: 1.74 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -3.67 Total: -111.29 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.06 Total: -29.49 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 14.07 SS G_CDS: -1.33 Total: 12.74 kcal Total: -70.23 0.81 -69.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271913072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds