Wall clock time and date at job start Mon Mar 30 2020 01:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47145 * 2 1 4 4 C 1.36860 * 119.99896 * 278.51027 * 3 2 1 5 5 H 1.07998 * 120.00061 * 172.16601 * 4 3 2 6 6 C 1.39052 * 119.99888 * 352.17400 * 4 3 2 7 7 N 1.31363 * 119.99817 * 27.52283 * 6 4 3 8 8 Si 1.86799 * 119.99944 * 207.52559 * 6 4 3 9 9 H 1.48493 * 109.47337 * 94.99144 * 8 6 4 10 10 H 1.48508 * 109.47143 * 214.99224 * 8 6 4 11 11 H 1.48504 * 109.46986 * 334.98672 * 8 6 4 12 12 C 1.34781 * 120.00276 * 98.51754 * 3 2 1 13 13 O 1.21621 * 119.99568 * 185.95769 * 12 3 2 14 14 C 1.47535 * 120.00147 * 5.95307 * 12 3 2 15 15 C 1.40835 * 119.46833 * 331.64498 * 14 12 3 16 16 C 1.35075 * 121.42939 * 179.97438 * 15 14 12 17 17 C 1.41966 * 120.27196 * 0.03968 * 16 15 14 18 18 C 1.46110 * 118.84662 * 359.93892 * 17 16 15 19 19 C 1.38082 * 119.47243 * 151.62366 * 14 12 3 20 20 N 1.32499 * 110.46811 * 180.02562 * 18 17 16 21 21 S 1.55534 * 109.37051 * 0.02562 * 20 18 17 22 22 N 1.32270 * 130.70391 * 180.02562 * 17 16 15 23 23 H 1.09000 * 109.46680 * 60.00398 * 1 2 3 24 24 H 1.08999 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47095 * 300.00581 * 1 2 3 26 26 H 1.08996 * 109.47095 * 239.99419 * 2 1 3 27 27 H 1.09000 * 109.46680 * 119.99602 * 2 1 3 28 28 H 0.97000 * 119.99814 * 179.97438 * 7 6 4 29 29 H 1.07995 * 119.28846 * 359.97438 * 15 14 12 30 30 H 1.08008 * 119.86569 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.15880 * 0.02562 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0811 2.0848 -1.1722 5 1 2.3191 3.1381 -1.1577 6 6 1.8382 1.4435 -2.3819 7 7 1.0571 0.3880 -2.4204 8 14 2.6228 2.0828 -3.9519 9 1 3.8803 1.3384 -4.2156 10 1 1.6858 1.8896 -5.0878 11 1 2.9257 3.5287 -3.8007 12 6 2.4060 1.9590 1.1543 13 8 2.7082 3.1369 1.1732 14 6 2.4636 1.1626 2.3949 15 6 1.6034 0.0583 2.5500 16 6 1.6230 -0.6982 3.6688 17 6 2.5214 -0.3915 4.7244 18 6 3.4196 0.7513 4.5760 19 6 3.3604 1.5116 3.3852 20 7 4.1813 0.8847 5.6519 21 16 3.8304 -0.2336 6.6744 22 7 2.7141 -0.9821 5.8921 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8874 -0.0591 -3.2643 29 1 0.9131 -0.1890 1.7572 30 1 0.9523 -1.5398 3.7609 31 1 4.0133 2.3613 3.2511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271977214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:30 Heat of formation + Delta-G solvation = 96.216107 kcal Electronic energy + Delta-G solvation = -18986.930715 eV Core-core repulsion = 15976.864050 eV Total energy + Delta-G solvation = -3010.066665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75820 -39.02384 -35.65703 -35.44321 -33.62304 -32.05384 -30.19306 -29.63349 -27.61616 -25.08315 -22.90331 -22.04109 -21.76830 -20.01131 -18.84659 -17.73447 -17.07615 -16.15055 -15.62567 -15.18244 -15.00768 -14.26998 -13.86670 -13.76768 -13.67443 -13.26776 -12.36646 -12.21088 -11.67034 -11.56588 -11.49985 -11.31494 -11.20609 -11.06709 -10.90003 -10.73151 -10.44746 -10.38907 -10.32285 -9.85799 -8.94116 -8.61604 -8.36715 -8.14544 -7.97172 -6.59460 -3.88046 -0.03701 1.44534 1.55228 1.92007 1.98287 3.04670 3.17615 3.22655 3.45366 3.95061 4.22075 4.30916 4.62842 4.90945 5.10438 5.23261 5.36579 5.38711 5.60363 5.93401 6.10215 6.27507 6.35576 6.40597 6.45331 6.49431 6.63299 6.73115 7.08365 7.14585 7.32537 7.61365 7.91178 8.31528 8.98683 9.21222 9.82655 10.34937 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.004721 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.089384 B = 5929.960510 C = 6414.232879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.080 3.920 3 N -0.417 5.417 4 C -0.297 4.297 5 H 0.113 0.887 6 C 0.034 3.966 7 N -0.846 5.846 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.460 3.540 13 O -0.591 6.591 14 C -0.064 4.064 15 C -0.100 4.100 16 C -0.090 4.090 17 C 0.086 3.914 18 C 0.085 3.915 19 C -0.042 4.042 20 N -0.594 5.594 21 S 0.752 5.248 22 N -0.599 5.599 23 H 0.101 0.899 24 H 0.045 0.955 25 H 0.030 0.970 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.272 0.728 29 H 0.182 0.818 30 H 0.138 0.862 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -6.363 9.893 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.043 4.043 3 N -0.133 5.133 4 C -0.425 4.425 5 H 0.130 0.870 6 C -0.171 4.171 7 N -0.484 5.484 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.250 3.750 13 O -0.478 6.478 14 C -0.074 4.074 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.074 4.074 19 C -0.069 4.069 20 N -0.445 5.445 21 S 0.800 5.200 22 N -0.449 5.449 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.199 0.801 30 H 0.156 0.844 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.836 -6.373 11.839 13.570 hybrid contribution -0.420 0.373 -2.347 2.413 sum 1.416 -6.000 9.492 11.318 Atomic orbital electron populations 1.22197 0.95994 1.00516 1.02538 1.22625 0.95051 0.84044 1.02560 1.43818 1.51418 1.11793 1.06242 1.19893 1.44493 0.96221 0.81881 0.86976 1.25349 0.95590 0.96377 0.99798 1.70176 1.29588 1.21146 1.27527 0.85967 0.79288 0.79861 0.80084 1.20150 1.20908 1.19041 1.17491 0.87356 0.87432 0.82735 1.90633 1.56587 1.15535 1.85054 1.20087 0.95795 0.95633 0.95901 1.22434 0.99295 0.93006 0.97650 1.20118 0.98634 1.02171 0.90516 1.21472 0.99792 0.93820 0.92318 1.21225 0.94359 0.97409 0.94373 1.20435 0.99220 0.98886 0.88384 1.72300 1.31621 1.30642 1.09974 1.78322 1.15573 1.03452 1.22638 1.72174 1.25091 1.34967 1.12716 0.88036 0.93622 0.95071 0.87522 0.91497 0.91767 0.80132 0.84379 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.47 37.16 0.31 -2.59 16 2 C 0.08 1.62 4.86 -4.04 -0.02 1.60 16 3 N -0.42 -9.99 2.64 -116.00 -0.31 -10.30 16 4 C -0.30 -7.65 9.37 -15.01 -0.14 -7.79 16 5 H 0.11 3.09 7.31 -52.49 -0.38 2.71 16 6 C 0.03 0.81 5.12 -17.45 -0.09 0.72 16 7 N -0.85 -19.45 7.98 55.50 0.44 -19.01 16 8 Si 0.92 19.04 29.63 -169.99 -5.04 14.00 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 C 0.46 11.06 7.40 -12.47 -0.09 10.97 16 13 O -0.59 -16.24 16.19 5.26 0.09 -16.15 16 14 C -0.06 -1.27 5.60 -105.18 -0.59 -1.86 16 15 C -0.10 -1.69 7.31 -39.72 -0.29 -1.98 16 16 C -0.09 -1.37 10.05 -39.28 -0.39 -1.77 16 17 C 0.09 1.43 7.16 -83.10 -0.59 0.83 16 18 C 0.08 1.50 7.15 -83.22 -0.59 0.91 16 19 C -0.04 -0.81 9.65 -38.43 -0.37 -1.18 16 20 N -0.59 -9.62 11.45 25.65 0.29 -9.32 16 21 S 0.75 9.28 23.60 -107.50 -2.54 6.74 16 22 N -0.60 -9.05 11.43 25.71 0.29 -8.75 16 23 H 0.10 2.21 6.20 -51.93 -0.32 1.89 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.55 7.09 -51.93 -0.37 0.18 16 26 H 0.11 2.34 5.86 -51.93 -0.30 2.03 16 27 H 0.07 1.20 3.96 -54.21 -0.21 0.99 16 28 H 0.27 5.90 8.31 -40.82 -0.34 5.57 16 29 H 0.18 2.93 2.30 -52.49 -0.12 2.81 16 30 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.15 2.85 7.83 -52.49 -0.41 2.43 16 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -28.85 271.42 -7.64 -36.49 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.10 Total: 4.35 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.86 Total: -2.14 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.72 Total: -47.38 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.09 Total: -16.15 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.04 Total: 14.00 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -2.54 Total: 6.74 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.85 -7.64 -36.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271977214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.708 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds