Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47145 * 2 1 4 4 C 1.36860 * 119.99896 * 278.51027 * 3 2 1 5 5 H 1.07998 * 120.00061 * 172.16601 * 4 3 2 6 6 C 1.39052 * 119.99888 * 352.17400 * 4 3 2 7 7 N 1.31363 * 119.99817 * 27.52283 * 6 4 3 8 8 Si 1.86799 * 119.99944 * 207.52559 * 6 4 3 9 9 H 1.48493 * 109.47337 * 94.99144 * 8 6 4 10 10 H 1.48508 * 109.47143 * 214.99224 * 8 6 4 11 11 H 1.48504 * 109.46986 * 334.98672 * 8 6 4 12 12 C 1.34781 * 120.00276 * 98.51754 * 3 2 1 13 13 O 1.21621 * 119.99568 * 185.95769 * 12 3 2 14 14 C 1.47535 * 120.00147 * 5.95307 * 12 3 2 15 15 C 1.40835 * 119.46833 * 331.64498 * 14 12 3 16 16 C 1.35075 * 121.42939 * 179.97438 * 15 14 12 17 17 C 1.41966 * 120.27196 * 0.03968 * 16 15 14 18 18 C 1.46110 * 118.84662 * 359.93892 * 17 16 15 19 19 C 1.38082 * 119.47243 * 151.62366 * 14 12 3 20 20 N 1.32499 * 110.46811 * 180.02562 * 18 17 16 21 21 S 1.55534 * 109.37051 * 0.02562 * 20 18 17 22 22 N 1.32270 * 130.70391 * 180.02562 * 17 16 15 23 23 H 1.09000 * 109.46680 * 60.00398 * 1 2 3 24 24 H 1.08999 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47095 * 300.00581 * 1 2 3 26 26 H 1.08996 * 109.47095 * 239.99419 * 2 1 3 27 27 H 1.09000 * 109.46680 * 119.99602 * 2 1 3 28 28 H 0.97000 * 119.99814 * 179.97438 * 7 6 4 29 29 H 1.07995 * 119.28846 * 359.97438 * 15 14 12 30 30 H 1.08008 * 119.86569 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.15880 * 0.02562 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0811 2.0848 -1.1722 5 1 2.3191 3.1381 -1.1577 6 6 1.8382 1.4435 -2.3819 7 7 1.0571 0.3880 -2.4204 8 14 2.6228 2.0828 -3.9519 9 1 3.8803 1.3384 -4.2156 10 1 1.6858 1.8896 -5.0878 11 1 2.9257 3.5287 -3.8007 12 6 2.4060 1.9590 1.1543 13 8 2.7082 3.1369 1.1732 14 6 2.4636 1.1626 2.3949 15 6 1.6034 0.0583 2.5500 16 6 1.6230 -0.6982 3.6688 17 6 2.5214 -0.3915 4.7244 18 6 3.4196 0.7513 4.5760 19 6 3.3604 1.5116 3.3852 20 7 4.1813 0.8847 5.6519 21 16 3.8304 -0.2336 6.6744 22 7 2.7141 -0.9821 5.8921 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8874 -0.0591 -3.2643 29 1 0.9131 -0.1890 1.7572 30 1 0.9523 -1.5398 3.7609 31 1 4.0133 2.3613 3.2511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271977214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = 77.640733 kcal Electronic energy + Delta-G solvation = -18987.736204 eV Core-core repulsion = 15976.864050 eV Total energy + Delta-G solvation = -3010.872154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08522 -40.65903 -37.28992 -37.08050 -34.88598 -33.84102 -31.78107 -31.07054 -29.07675 -26.80833 -24.40508 -23.57046 -23.12635 -21.50239 -20.12568 -19.19484 -18.86869 -17.61284 -16.93083 -16.86201 -16.52494 -15.97966 -15.52192 -15.37511 -15.00597 -14.85330 -13.91204 -13.88696 -13.25627 -12.97253 -12.81481 -12.71833 -12.65445 -12.58855 -12.48724 -12.10250 -12.09212 -11.95784 -11.70563 -11.40467 -10.71731 -10.45456 -9.89436 -9.62164 -9.40282 -8.39607 -5.80818 -1.28543 0.06711 0.37354 0.66010 0.80376 1.37783 1.46033 1.55763 1.92574 2.25063 2.60336 2.91760 3.03888 3.10514 3.77081 3.87626 3.93323 4.04544 4.25176 4.44005 4.76903 4.85832 4.87319 4.90541 5.09053 5.12847 5.23346 5.33942 5.40114 5.57073 5.78640 5.99159 6.04687 6.50047 7.13164 7.40554 8.00349 8.52613 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.004721 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.089384 B = 5929.960510 C = 6414.232879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 N -0.423 5.423 4 C -0.350 4.350 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.843 5.843 8 Si 0.979 3.021 9 H -0.271 1.271 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.445 3.555 13 O -0.644 6.644 14 C -0.075 4.075 15 C -0.115 4.115 16 C -0.060 4.060 17 C 0.069 3.931 18 C 0.060 3.940 19 C -0.044 4.044 20 N -0.627 5.627 21 S 0.893 5.107 22 N -0.612 5.612 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.279 0.721 29 H 0.188 0.812 30 H 0.176 0.824 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -9.280 12.032 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 N -0.138 5.138 4 C -0.477 4.477 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.479 5.479 8 Si 0.802 3.198 9 H -0.196 1.196 10 H -0.193 1.193 11 H -0.206 1.206 12 C 0.237 3.763 13 O -0.535 6.535 14 C -0.085 4.085 15 C -0.138 4.138 16 C -0.084 4.084 17 C -0.087 4.087 18 C -0.095 4.095 19 C -0.071 4.071 20 N -0.482 5.482 21 S 0.938 5.062 22 N -0.466 5.466 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.204 0.796 30 H 0.193 0.807 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.537 -9.330 13.899 16.810 hybrid contribution -0.217 1.176 -2.579 2.843 sum 1.320 -8.154 11.319 14.012 Atomic orbital electron populations 1.22053 0.94688 1.02235 1.01301 1.22778 0.96099 0.82195 1.03239 1.43965 1.51281 1.12895 1.05658 1.19633 1.48751 0.95545 0.83797 0.90627 1.25868 0.95061 0.96721 1.01275 1.70226 1.28335 1.20899 1.28471 0.85159 0.78763 0.78465 0.77367 1.19599 1.19298 1.20572 1.18195 0.86683 0.87332 0.84114 1.90566 1.58694 1.17988 1.86221 1.19774 0.97698 0.96846 0.94201 1.22249 0.99521 0.92871 0.99120 1.20454 0.97452 1.01629 0.88858 1.21463 1.00251 0.93798 0.93215 1.20994 0.95830 0.98301 0.94342 1.20311 0.98847 0.98569 0.89376 1.72017 1.32421 1.33142 1.10625 1.77870 1.10925 0.98837 1.18544 1.72007 1.26400 1.35747 1.12449 0.91235 0.90236 0.94338 0.89210 0.88581 0.90989 0.79558 0.80705 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 8.47 71.98 0.61 -4.75 16 2 C 0.08 3.20 4.86 86.38 0.42 3.62 16 3 N -0.42 -21.35 2.64 -639.15 -1.69 -23.04 16 4 C -0.35 -19.20 9.37 84.10 0.79 -18.41 16 5 H 0.08 4.58 7.31 -2.91 -0.02 4.56 16 6 C 0.02 0.82 5.12 84.96 0.43 1.25 16 7 N -0.84 -38.98 7.98 21.68 0.17 -38.81 16 8 Si 0.98 39.98 29.63 68.60 2.03 42.02 16 9 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.45 22.82 7.40 86.69 0.64 23.46 16 13 O -0.64 -38.37 16.19 -4.10 -0.07 -38.44 16 14 C -0.08 -3.09 5.60 -20.23 -0.11 -3.20 16 15 C -0.11 -3.72 7.31 22.18 0.16 -3.55 16 16 C -0.06 -1.64 10.05 22.46 0.23 -1.41 16 17 C 0.07 2.06 7.16 42.04 0.30 2.36 16 18 C 0.06 2.04 7.15 41.87 0.30 2.34 16 19 C -0.04 -1.75 9.65 23.01 0.22 -1.53 16 20 N -0.63 -18.76 11.45 -72.78 -0.83 -19.60 16 21 S 0.89 17.98 23.60 -56.49 -1.33 16.64 16 22 N -0.61 -15.75 11.43 -72.59 -0.83 -16.58 16 23 H 0.07 3.05 6.20 -2.39 -0.01 3.03 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.04 1.34 7.09 -2.39 -0.02 1.32 16 26 H 0.09 3.96 5.86 -2.39 -0.01 3.94 16 27 H 0.10 3.38 3.96 -4.53 -0.02 3.36 16 28 H 0.28 11.95 8.31 -92.71 -0.77 11.18 16 29 H 0.19 5.77 2.30 -2.91 -0.01 5.76 16 30 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.13 5.32 7.83 -2.91 -0.02 5.30 16 Total: -1.00 -66.99 271.42 2.64 -64.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.19 Total: 13.26 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 3.99 Total: 0.19 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -3.18 Total: -98.03 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.07 Total: -38.44 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 17.98 SS G_CDS: -1.33 Total: 16.64 kcal Total: -66.99 2.64 -64.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271977214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.991 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds