Wall clock time and date at job start Mon Mar 30 2020 01:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47020 * 2 1 4 4 C 1.36623 * 120.00101 * 260.51482 * 3 2 1 5 5 H 1.07996 * 119.99928 * 194.64640 * 4 3 2 6 6 C 1.39204 * 120.00049 * 14.64235 * 4 3 2 7 7 N 1.31269 * 119.99692 * 22.26737 * 6 4 3 8 8 Si 1.86795 * 120.00267 * 202.26967 * 6 4 3 9 9 H 1.48507 * 109.47001 * 59.99870 * 8 6 4 10 10 H 1.48492 * 109.47243 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47014 * 300.00316 * 8 6 4 12 12 C 1.34777 * 119.99925 * 80.51056 * 3 2 1 13 13 O 1.21625 * 120.00151 * 183.15024 * 12 3 2 14 14 C 1.47564 * 119.99988 * 3.15490 * 12 3 2 15 15 N 1.29089 * 124.85499 * 171.49395 * 14 12 3 16 16 C 1.33216 * 118.12056 * 179.97438 * 15 14 12 17 17 C 1.41657 * 129.10187 * 180.02562 * 16 15 14 18 18 C 1.36512 * 118.87953 * 180.02562 * 17 16 15 19 19 C 1.38784 * 119.89502 * 0.02562 * 18 17 16 20 20 N 1.31408 * 120.95560 * 359.96272 * 19 18 17 21 21 C 1.33027 * 121.82080 * 0.07606 * 20 19 18 22 22 S 1.75843 * 124.86158 * 351.46995 * 14 12 3 23 23 H 1.09002 * 109.47282 * 300.00472 * 1 2 3 24 24 H 1.09000 * 109.46823 * 60.00527 * 1 2 3 25 25 H 1.08997 * 109.46753 * 179.97438 * 1 2 3 26 26 H 1.08988 * 109.47493 * 239.99636 * 2 1 3 27 27 H 1.09000 * 109.46823 * 119.99473 * 2 1 3 28 28 H 0.96994 * 120.00067 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.55946 * 359.97438 * 17 16 15 30 30 H 1.07998 * 120.05570 * 179.72295 * 18 17 16 31 31 H 1.07997 * 119.51965 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4299 1.9603 -1.1670 5 1 3.0033 2.8751 -1.1430 6 6 2.1101 1.3712 -2.3870 7 7 1.0892 0.5503 -2.4718 8 14 3.1336 1.7485 -3.9033 9 1 4.5410 1.3388 -3.6650 10 1 2.5909 1.0005 -5.0656 11 1 3.0831 3.2057 -4.1845 12 6 2.0615 2.0807 1.1512 13 8 2.4125 3.2452 1.1425 14 6 1.6831 1.4337 2.4223 15 7 1.8364 1.9586 3.5917 16 6 1.4461 1.2537 4.6525 17 6 1.5040 1.5988 6.0251 18 6 1.0405 0.7074 6.9492 19 6 0.5245 -0.5127 6.5353 20 7 0.4731 -0.8273 5.2605 21 6 0.9105 0.0005 4.3155 22 16 0.9582 -0.1624 2.5609 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5138 0.8900 28 1 0.8661 0.1400 -3.3219 29 1 1.9089 2.5508 6.3353 30 1 1.0797 0.9491 8.0011 31 1 0.1598 -1.2135 7.2716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279166013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:33 Heat of formation + Delta-G solvation = 59.323444 kcal Electronic energy + Delta-G solvation = -18868.426521 eV Core-core repulsion = 15856.760070 eV Total energy + Delta-G solvation = -3011.666451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44820 -38.96690 -37.00206 -35.29097 -32.37950 -32.28858 -30.18669 -29.60954 -26.51758 -24.62447 -23.76347 -22.70599 -21.96279 -19.45654 -18.34548 -17.25210 -17.08487 -16.35356 -15.91683 -15.09938 -15.01430 -14.65248 -14.19508 -13.96182 -13.61150 -13.16983 -12.96510 -12.57514 -12.47407 -12.02106 -11.72309 -11.37424 -11.21680 -11.11904 -10.79055 -10.57169 -10.46319 -10.03252 -9.76338 -9.32821 -9.10209 -8.58558 -8.51288 -8.24922 -7.84784 -6.77062 -4.11019 0.30270 1.17706 1.45868 2.04673 2.35385 3.03328 3.07940 3.10518 3.66334 3.73103 4.05189 4.07153 4.57901 4.68563 4.77439 4.85575 5.02298 5.18525 5.35391 5.67407 5.78499 6.05172 6.11089 6.17094 6.22836 6.51404 6.55156 6.85700 7.09943 7.42301 7.59905 7.82393 7.94847 8.14063 8.78170 8.93367 9.58534 10.21082 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.005210 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.073570 B = 5373.283502 C = 5917.849012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.402 5.402 4 C -0.290 4.290 5 H 0.116 0.884 6 C 0.035 3.965 7 N -0.842 5.842 8 Si 0.935 3.065 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.482 3.518 13 O -0.554 6.554 14 C 0.109 3.891 15 N -0.440 5.440 16 C 0.043 3.957 17 C -0.027 4.027 18 C -0.171 4.171 19 C 0.114 3.886 20 N -0.442 5.442 21 C -0.037 4.037 22 S 0.162 5.838 23 H 0.039 0.961 24 H 0.104 0.896 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.049 0.951 28 H 0.279 0.721 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 -5.604 9.144 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.119 5.119 4 C -0.420 4.420 5 H 0.133 0.867 6 C -0.173 4.173 7 N -0.479 5.479 8 Si 0.760 3.240 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.192 1.192 12 C 0.269 3.731 13 O -0.438 6.438 14 C -0.174 4.174 15 N -0.155 5.155 16 C -0.084 4.084 17 C -0.056 4.056 18 C -0.194 4.194 19 C -0.059 4.059 20 N -0.152 5.152 21 C -0.283 4.283 22 S 0.419 5.581 23 H 0.057 0.943 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.963 -6.185 7.929 10.246 hybrid contribution 0.643 0.985 0.668 1.352 sum -1.321 -5.200 8.597 10.134 Atomic orbital electron populations 1.22359 0.95101 1.01631 1.03006 1.21890 0.95900 0.83685 1.00946 1.43714 1.51387 1.10585 1.06183 1.19939 1.30214 1.10432 0.81403 0.86683 1.25507 0.95618 0.96487 0.99685 1.69946 1.21851 1.28481 1.27637 0.85836 0.79928 0.79321 0.78933 1.19358 1.20499 1.19221 1.16521 0.89084 0.86399 0.81138 1.90687 1.53574 1.15211 1.84365 1.27833 0.99898 0.92846 0.96779 1.65743 1.19199 1.33502 0.97055 1.20017 1.02112 0.91824 0.94480 1.20935 0.95844 0.99848 0.88980 1.21597 1.01710 0.95479 1.00623 1.22849 0.95880 0.95259 0.91867 1.67192 1.15047 1.32359 1.00647 1.26320 1.03598 0.95211 1.03160 1.86395 1.60748 1.19287 0.91702 0.94252 0.87794 0.92707 0.86369 0.93470 0.91045 0.84064 0.84086 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.38 37.16 0.31 -2.84 16 2 C 0.10 2.11 4.83 -4.04 -0.02 2.10 16 3 N -0.40 -9.78 2.64 -116.01 -0.31 -10.09 16 4 C -0.29 -7.34 9.35 -15.06 -0.14 -7.48 16 5 H 0.12 3.05 7.37 -52.49 -0.39 2.67 16 6 C 0.03 0.80 4.88 -17.43 -0.09 0.71 16 7 N -0.84 -19.04 8.70 55.51 0.48 -18.55 16 8 Si 0.93 18.22 29.61 -169.99 -5.03 13.19 16 9 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 10 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 C 0.48 12.30 7.54 -12.46 -0.09 12.21 16 13 O -0.55 -16.01 16.69 5.26 0.09 -15.92 16 14 C 0.11 2.47 7.03 -14.90 -0.10 2.36 16 15 N -0.44 -9.85 10.47 -8.58 -0.09 -9.94 16 16 C 0.04 0.82 6.95 -85.15 -0.59 0.23 16 17 C -0.03 -0.41 10.18 -38.90 -0.40 -0.80 16 18 C -0.17 -1.98 10.00 -40.00 -0.40 -2.38 16 19 C 0.11 1.43 11.19 -17.53 -0.20 1.24 16 20 N -0.44 -7.38 10.38 -11.60 -0.12 -7.50 16 21 C -0.04 -0.70 7.72 -16.23 -0.13 -0.82 16 22 S 0.16 3.03 15.44 -107.50 -1.66 1.37 16 23 H 0.04 0.77 5.80 -39.44 -0.23 0.54 16 24 H 0.10 2.26 6.25 -51.93 -0.32 1.94 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.12 2.52 5.98 -51.94 -0.31 2.21 16 27 H 0.05 0.92 4.56 -22.51 -0.10 0.82 16 28 H 0.28 5.90 8.31 -40.82 -0.34 5.56 16 29 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -29.75 273.90 -6.53 -36.29 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.18 Total: 2.51 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.84 Total: 4.52 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.03 Total: -46.08 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.66 Total: 1.37 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.75 -6.53 -36.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279166013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.610 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds