Wall clock time and date at job start Mon Mar 30 2020 01:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47020 * 2 1 4 4 C 1.36623 * 120.00101 * 260.51482 * 3 2 1 5 5 H 1.07996 * 119.99928 * 194.64640 * 4 3 2 6 6 C 1.39204 * 120.00049 * 14.64235 * 4 3 2 7 7 N 1.31269 * 119.99692 * 22.26737 * 6 4 3 8 8 Si 1.86795 * 120.00267 * 202.26967 * 6 4 3 9 9 H 1.48507 * 109.47001 * 59.99870 * 8 6 4 10 10 H 1.48492 * 109.47243 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47014 * 300.00316 * 8 6 4 12 12 C 1.34777 * 119.99925 * 80.51056 * 3 2 1 13 13 O 1.21625 * 120.00151 * 183.15024 * 12 3 2 14 14 C 1.47564 * 119.99988 * 3.15490 * 12 3 2 15 15 N 1.29089 * 124.85499 * 171.49395 * 14 12 3 16 16 C 1.33216 * 118.12056 * 179.97438 * 15 14 12 17 17 C 1.41657 * 129.10187 * 180.02562 * 16 15 14 18 18 C 1.36512 * 118.87953 * 180.02562 * 17 16 15 19 19 C 1.38784 * 119.89502 * 0.02562 * 18 17 16 20 20 N 1.31408 * 120.95560 * 359.96272 * 19 18 17 21 21 C 1.33027 * 121.82080 * 0.07606 * 20 19 18 22 22 S 1.75843 * 124.86158 * 351.46995 * 14 12 3 23 23 H 1.09002 * 109.47282 * 300.00472 * 1 2 3 24 24 H 1.09000 * 109.46823 * 60.00527 * 1 2 3 25 25 H 1.08997 * 109.46753 * 179.97438 * 1 2 3 26 26 H 1.08988 * 109.47493 * 239.99636 * 2 1 3 27 27 H 1.09000 * 109.46823 * 119.99473 * 2 1 3 28 28 H 0.96994 * 120.00067 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.55946 * 359.97438 * 17 16 15 30 30 H 1.07998 * 120.05570 * 179.72295 * 18 17 16 31 31 H 1.07997 * 119.51965 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4299 1.9603 -1.1670 5 1 3.0033 2.8751 -1.1430 6 6 2.1101 1.3712 -2.3870 7 7 1.0892 0.5503 -2.4718 8 14 3.1336 1.7485 -3.9033 9 1 4.5410 1.3388 -3.6650 10 1 2.5909 1.0005 -5.0656 11 1 3.0831 3.2057 -4.1845 12 6 2.0615 2.0807 1.1512 13 8 2.4125 3.2452 1.1425 14 6 1.6831 1.4337 2.4223 15 7 1.8364 1.9586 3.5917 16 6 1.4461 1.2537 4.6525 17 6 1.5040 1.5988 6.0251 18 6 1.0405 0.7074 6.9492 19 6 0.5245 -0.5127 6.5353 20 7 0.4731 -0.8273 5.2605 21 6 0.9105 0.0005 4.3155 22 16 0.9582 -0.1624 2.5609 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5138 0.8900 28 1 0.8661 0.1400 -3.3219 29 1 1.9089 2.5508 6.3353 30 1 1.0797 0.9491 8.0011 31 1 0.1598 -1.2135 7.2716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279166013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:33 Heat of formation + Delta-G solvation = 38.125147 kcal Electronic energy + Delta-G solvation = -18869.345748 eV Core-core repulsion = 15856.760070 eV Total energy + Delta-G solvation = -3012.585678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78557 -40.73147 -38.44330 -37.16319 -34.17144 -33.46400 -31.81838 -31.05384 -28.19798 -26.20477 -25.06827 -24.34221 -23.39237 -21.03278 -19.83423 -19.05938 -18.50648 -17.87321 -17.32824 -16.69259 -16.57099 -16.02035 -15.81586 -15.60001 -15.24430 -14.76957 -14.29281 -14.03245 -13.65286 -13.62107 -13.40645 -12.98744 -12.88278 -12.64460 -12.36114 -12.15577 -12.07835 -11.43034 -11.28853 -11.08630 -10.68518 -10.17887 -10.04865 -9.87517 -9.34004 -8.53535 -6.02413 -1.09467 -0.03925 0.01378 0.57072 0.90539 1.44214 1.47548 1.55351 2.05734 2.12046 2.45314 2.66849 2.95189 3.18369 3.43306 3.60847 3.74106 3.93502 4.06581 4.36099 4.52123 4.60308 4.61653 4.85276 4.97471 5.03631 5.17571 5.28636 5.49488 5.73566 5.79003 6.24818 6.47183 6.65946 6.92835 7.10895 7.72998 8.44178 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.005210 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.073570 B = 5373.283502 C = 5917.849012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.405 5.405 4 C -0.343 4.343 5 H 0.086 0.914 6 C 0.016 3.984 7 N -0.846 5.846 8 Si 0.997 3.003 9 H -0.267 1.267 10 H -0.261 1.261 11 H -0.275 1.275 12 C 0.466 3.534 13 O -0.612 6.612 14 C 0.067 3.933 15 N -0.458 5.458 16 C 0.001 3.999 17 C -0.034 4.034 18 C -0.144 4.144 19 C 0.136 3.864 20 N -0.469 5.469 21 C -0.047 4.047 22 S 0.204 5.796 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.288 0.712 29 H 0.159 0.841 30 H 0.199 0.801 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -7.953 11.884 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 N -0.120 5.120 4 C -0.472 4.472 5 H 0.104 0.896 6 C -0.191 4.191 7 N -0.481 5.481 8 Si 0.819 3.181 9 H -0.192 1.192 10 H -0.185 1.185 11 H -0.201 1.201 12 C 0.253 3.747 13 O -0.500 6.500 14 C -0.215 4.215 15 N -0.174 5.174 16 C -0.125 4.125 17 C -0.062 4.062 18 C -0.167 4.167 19 C -0.036 4.036 20 N -0.180 5.180 21 C -0.292 4.292 22 S 0.460 5.540 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.177 0.823 30 H 0.216 0.784 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.973 -8.585 10.646 13.996 hybrid contribution 0.821 1.578 0.264 1.798 sum -2.152 -7.008 10.910 13.144 Atomic orbital electron populations 1.22245 0.93977 1.03152 1.01670 1.22005 0.96735 0.82038 1.01448 1.43855 1.50863 1.11607 1.05716 1.19833 1.33017 1.11389 0.82955 0.89636 1.26169 0.95973 0.95849 1.01147 1.69984 1.21507 1.27896 1.28745 0.84947 0.78476 0.78687 0.76005 1.19234 1.18539 1.20072 1.16986 0.89022 0.86160 0.82488 1.90597 1.56112 1.17556 1.85744 1.27077 1.03120 0.95588 0.95738 1.65693 1.18752 1.35041 0.97927 1.20471 1.04208 0.92380 0.95471 1.21418 0.95799 1.01534 0.87474 1.22229 0.98118 0.93670 1.02639 1.23929 0.92392 0.96202 0.91108 1.67304 1.16390 1.32320 1.01971 1.26289 1.04009 0.95539 1.03343 1.85791 1.59471 1.15841 0.92852 0.94601 0.90086 0.89570 0.86960 0.91963 0.90094 0.82339 0.78445 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 8.38 71.98 0.60 -5.36 16 2 C 0.10 4.40 4.83 86.38 0.42 4.81 16 3 N -0.40 -21.01 2.64 -639.18 -1.69 -22.70 16 4 C -0.34 -18.58 9.35 84.18 0.79 -17.79 16 5 H 0.09 5.00 7.37 -2.91 -0.02 4.98 16 6 C 0.02 0.77 4.88 85.01 0.41 1.18 16 7 N -0.85 -38.67 8.70 21.71 0.19 -38.48 16 8 Si 1.00 38.07 29.61 68.60 2.03 40.10 16 9 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 10 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 12 C 0.47 25.63 7.54 86.70 0.65 26.28 16 13 O -0.61 -38.54 16.69 -4.11 -0.07 -38.61 16 14 C 0.07 3.17 7.03 87.56 0.62 3.79 16 15 N -0.46 -21.25 10.47 -181.04 -1.90 -23.15 16 16 C 0.00 0.04 6.95 40.30 0.28 0.32 16 17 C -0.03 -0.89 10.18 22.71 0.23 -0.66 16 18 C -0.14 -2.46 10.00 22.00 0.22 -2.24 16 19 C 0.14 2.61 11.19 84.89 0.95 3.56 16 20 N -0.47 -13.96 10.38 -190.61 -1.98 -15.94 16 21 C -0.05 -1.71 7.72 85.03 0.66 -1.05 16 22 S 0.20 7.66 15.44 -56.49 -0.87 6.79 16 23 H 0.04 1.42 5.80 -10.33 -0.06 1.36 16 24 H 0.08 3.59 6.25 -2.39 -0.01 3.58 16 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.11 4.90 5.98 -2.39 -0.01 4.88 16 27 H 0.06 2.48 4.56 -21.09 -0.10 2.38 16 28 H 0.29 12.02 8.31 -92.71 -0.77 11.25 16 29 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -71.91 273.90 2.60 -69.32 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.05 Total: 9.83 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.83 Total: 12.84 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.37 Total: -100.27 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.07 Total: -38.61 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -0.87 Total: 6.79 kcal Total: -71.91 2.60 -69.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279166013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.440 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds